Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is ycgM [H]
Identifier: 126446757
GI number: 126446757
Start: 1124683
End: 1125387
Strand: Reverse
Name: ycgM [H]
Synonym: BMA10247_A1149
Alternate gene names: 126446757
Gene position: 1125387-1124683 (Counterclockwise)
Preceding gene: 126446059
Following gene: 126446123
Centisome position: 47.83
GC content: 72.06
Gene sequence:
>705_bases ATGACCGATTACGTTTTTGCGCCGCCCGCCGTGCCGTCCGTCGAGATCGCCGGCTGCGCCGCGCGCTTTGCGGTGCGCCG CGTGTTCTGCGTCGGCCGCAACTATGCGGACCACGCGCGCGAGATGGGCGCCGATCCGAACCGCGAGCCGCCGTTCTTCT TCACGAAGCCGGCCGACGCGATCGTGCCCGCGAGCGGCACGGTGCCATACCCGACGCTCACGTCCGAGCTGCATCACGAG ATCGAACTCGTGATCGCGATCGGCCGCGGCGGGCGCGCGATCGCCGCCGACGCGGCGCTCGATCACGTGTGGGGCTATGG CGTCGGCGTCGACCTGACGCGGCGCGACTTGCAGGCCGAGGCGAAGAAGGCCGGCAGGCCGTGGGACTGGGCGAAGGGCT TCGACGCGTCGGGCCCGGTGACGGCGCTGCATCCGGCCGCGTCGATCGGCCATCCGCAGCGCGGCCGGATCTGGCTCGCC GTGAACGGCGCCTTGCGCCAGCAAGGCGATCTCGCCGACATGATCTGGCCGATCCCCGACGTGATCGCGTATGCGTCGCG CGCGGTCGAACTGCGCGCGGGCGACCTGATCTTCACCGGCACGCCGGCGGGCGTCGCCGCGCTGCAGCCGGGCGAGCGCG TGACGGGCGGCGTCGACGGCGTCGCGTCGTTCGAGTTCGTCGTCGGAGAAAAACCGGCCGCGTGA
Upstream 100 bases:
>100_bases CCGCGCCCGCCCCGGCGCGCGGCCGGGCAGCGCACCGCCCGCACGCGCCGTCGCTTTCGCTTTCGCTTTCACTTTTCGAC ACCTTTTCAGAGACCCGAAG
Downstream 100 bases:
>100_bases GCCGCCTCGCCGCTCCCGCTTCGCCGTTTTCCCTCCGGAGGCTGTCCGCTTGGGGCGTGCCCGGCGCGCGCCGCCCGCCC GGGCCCCGCACGGGCGGCAT
Product: fumarylacetoacetate hydrolase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 234; Mature: 233
Protein sequence:
>234_residues MTDYVFAPPAVPSVEIAGCAARFAVRRVFCVGRNYADHAREMGADPNREPPFFFTKPADAIVPASGTVPYPTLTSELHHE IELVIAIGRGGRAIAADAALDHVWGYGVGVDLTRRDLQAEAKKAGRPWDWAKGFDASGPVTALHPAASIGHPQRGRIWLA VNGALRQQGDLADMIWPIPDVIAYASRAVELRAGDLIFTGTPAGVAALQPGERVTGGVDGVASFEFVVGEKPAA
Sequences:
>Translated_234_residues MTDYVFAPPAVPSVEIAGCAARFAVRRVFCVGRNYADHAREMGADPNREPPFFFTKPADAIVPASGTVPYPTLTSELHHE IELVIAIGRGGRAIAADAALDHVWGYGVGVDLTRRDLQAEAKKAGRPWDWAKGFDASGPVTALHPAASIGHPQRGRIWLA VNGALRQQGDLADMIWPIPDVIAYASRAVELRAGDLIFTGTPAGVAALQPGERVTGGVDGVASFEFVVGEKPAA >Mature_233_residues TDYVFAPPAVPSVEIAGCAARFAVRRVFCVGRNYADHAREMGADPNREPPFFFTKPADAIVPASGTVPYPTLTSELHHEI ELVIAIGRGGRAIAADAALDHVWGYGVGVDLTRRDLQAEAKKAGRPWDWAKGFDASGPVTALHPAASIGHPQRGRIWLAV NGALRQQGDLADMIWPIPDVIAYASRAVELRAGDLIFTGTPAGVAALQPGERVTGGVDGVASFEFVVGEKPAA
Specific function: Unknown
COG id: COG0179
COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FAH family [H]
Homologues:
Organism=Homo sapiens, GI13654274, Length=207, Percent_Identity=44.4444444444444, Blast_Score=191, Evalue=6e-49, Organism=Homo sapiens, GI66348062, Length=196, Percent_Identity=43.8775510204082, Blast_Score=184, Evalue=4e-47, Organism=Homo sapiens, GI215422413, Length=196, Percent_Identity=43.8775510204082, Blast_Score=184, Evalue=5e-47, Organism=Homo sapiens, GI156231349, Length=202, Percent_Identity=35.1485148514851, Blast_Score=118, Evalue=4e-27, Organism=Homo sapiens, GI40786394, Length=202, Percent_Identity=34.1584158415842, Blast_Score=112, Evalue=3e-25, Organism=Escherichia coli, GI1787428, Length=204, Percent_Identity=43.6274509803922, Blast_Score=165, Evalue=2e-42, Organism=Caenorhabditis elegans, GI17557057, Length=208, Percent_Identity=35.5769230769231, Blast_Score=145, Evalue=1e-35, Organism=Saccharomyces cerevisiae, GI6324161, Length=245, Percent_Identity=32.6530612244898, Blast_Score=136, Evalue=2e-33, Organism=Drosophila melanogaster, GI28571789, Length=205, Percent_Identity=34.1463414634146, Blast_Score=135, Evalue=2e-32, Organism=Drosophila melanogaster, GI28572127, Length=208, Percent_Identity=31.7307692307692, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI24663695, Length=208, Percent_Identity=27.4038461538462, Blast_Score=74, Evalue=9e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002529 - InterPro: IPR011234 [H]
Pfam domain/function: PF01557 FAA_hydrolase [H]
EC number: NA
Molecular weight: Translated: 24759; Mature: 24628
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDYVFAPPAVPSVEIAGCAARFAVRRVFCVGRNYADHAREMGADPNREPPFFFTKPADA CCCCEECCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEECCCCC IVPASGTVPYPTLTSELHHEIELVIAIGRGGRAIAADAALDHVWGYGVGVDLTRRDLQAE EECCCCCCCCCCHHHHHCCEEEEEEEECCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHH AKKAGRPWDWAKGFDASGPVTALHPAASIGHPQRGRIWLAVNGALRQQGDLADMIWPIPD HHHCCCCCCHHCCCCCCCCEEEECCHHHCCCCCCCEEEEEECCCHHCCCCHHHHHCCHHH VIAYASRAVELRAGDLIFTGTPAGVAALQPGERVTGGVDGVASFEFVVGEKPAA HHHHHHHHEEEECCCEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCC >Mature Secondary Structure TDYVFAPPAVPSVEIAGCAARFAVRRVFCVGRNYADHAREMGADPNREPPFFFTKPADA CCCEECCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEECCCCC IVPASGTVPYPTLTSELHHEIELVIAIGRGGRAIAADAALDHVWGYGVGVDLTRRDLQAE EECCCCCCCCCCHHHHHCCEEEEEEEECCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHH AKKAGRPWDWAKGFDASGPVTALHPAASIGHPQRGRIWLAVNGALRQQGDLADMIWPIPD HHHCCCCCCHHCCCCCCCCEEEECCHHHCCCCCCCEEEEEECCCHHCCCCHHHHHCCHHH VIAYASRAVELRAGDLIFTGTPAGVAALQPGERVTGGVDGVASFEFVVGEKPAA HHHHHHHHEEEECCCEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 10806384 [H]