Click here to switch to the map view.

The map label for this gene is 126446743

Identifier: 126446743

GI number: 126446743

Start: 2244200

End: 2245426

Strand: Direct

Name: 126446743

Synonym: BMA10247_A2316

Alternate gene names: NA

Gene position: 2244200-2245426 (Clockwise)

Preceding gene: 126447308

Following gene: 126446010

Centisome position: 95.39

GC content: 73.84

Gene sequence:

>1227_bases
ATGCTGTACGCGTGGCTCGAAGCGCAACGTGAATTCTTCCGCGCATGCCAGCCGTGGGCGGGCGCCGCGCAGCGCGCGGG
CGCGGGCGCGCGCCCGGCCGGCTGGCCGACATGGGGCCCGATGGCGCGCGCGGCCGATGCCGTTCCCGCGCCGCCGCCGT
TCGCGATCGCGTCGATCGAGATCGACGGCGCGGCCGTGCCGGTCGATGAGTGCGTCGTCGACGACACGCCGTTCTGCGCG
CTGCGCAAGTTCTCCCGCCGGCTACGCGGCGACGCGGCCGCGCGCCCCGCGGTCTTTCTGTGCACGCCGCTCGCCGGCCA
CCATGCGGTGATGCTGCGCGAGACCGTCGAGACGATACTCGCGACGCGCGACGTCTACGTGACCGACTGGCGCAACGCGC
GCGACGTCCCGCCCGAAGCCGGCGCGTTCGGCCTCGACGACTACGTGTGCACGCTCGAGCGCTTCGTCGCCGGCGCGGCC
GGCGACGGGCTGCACATGATGGCGGTCTGCCAGGCGACGGTGCCCGCGCTCGCGGCCGTCGCGCTGCTCGGCGGCCCCGT
CGACACGCGCTCGCACCCCACGCTTATCGATCGCTTCGCGCTCGAACACGACCTCGACTGGTTCCGCCGCACGGCGATCG
ACATCGTGCCGCCGCCGTACGCCGGCGCGGGGCGGCGCGTCTATCCGGGCTTCATCCAGCATGCGGCGATCATCGTCGCG
CATCCGCAGCGGCGCGCGTCGCTCGAGAGCCGCTACTGGACCGCATGGATGACGGGCGACTTCGCGGCCGCCGCGCGGTG
CCTACGCGAGATGAACGAATACGGCGCGGTGCTCGACATGACCGAGCGCTATTTCCTCGATACGATTCGCGTGATCTTCC
ACGAGCGGCTGCTCGCGCAGGGGCGCTGGTCGATCGGCCGCCGCCTCGTCGCGCCGCGGCGGCTCACGCGCACCGCGCTC
TGCACGATCGAGGGCGGCCGCGACGACATCGCCGGCGCCGGCCAGACGCACGCGGCGCACGCACTATGCGACGCGGTGCC
CGACGCCGTGCGCGAGCGGATCACCGAGCCGGACTGCGATCACTACGACCTCTTCCTCGGCCCGCGCTGGCGGCGCACGA
TCCATCCGGCGCTCGACGCATTCTGGACGCGCGCGGAAGCGGCGCGTGCCGCAGCCGGCGAGCCGCGGCCCACCGCCGAG
CGTGCGGAGCGCCGCATCGCGCACTGA

Upstream 100 bases:

>100_bases
CCACGCGCCAACGGCCCGCCCACGGCCGCCCGCGCGGCGCATGCCGCATGCGCCACGACGGCCGCGATGATGCGTCCCCA
TACGCCCGCAAGGAGATCCG

Downstream 100 bases:

>100_bases
GCCGCCCCCGGCACCATCCGCGACCGCGCAACGCGCCGCTCGCCGCGCTGCCCGTCATGCCGCTCGCCGCGCCGCTCGCC
GCACCGCCCGCCATGTCGCT

Product: polyhydroxyalkanoate depolymerase family protein, intracellular

Products: NA

Alternate protein names: Intracellular PHB Depolymerase; Polyhydroxyalkanoate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase; PHB Depolymerase; Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Intracellular Poly(3-Hydroxybutyrate) Depolymerase; Intracellular Polyhydroxyalkanoate Depolymerase; Polyhydroxyalkanoate Depolymerase Intracellular Subfamily; Poly(3-Hydroxyalkanoate) Depolymerase; PHB De-Polymerase Domain-Containing Protein; Poly(3-Hydroxybutyrate) Depolymerase; Intracellular PHB Depolymerase Protein; Poly-Beta-Hydroxyalkanoate Depolymerase-Like Protein; Intracellular Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Poly[D(-)-3-Hydroxybutyrate](Phb) Depolymerase; Poly-Beta-Hydroxyalkanoate/Butyrate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase Protein; Poly[D(-)-3-Hydroxyalkanoate] Depolymerase; Polyhydroxybutanoate Depolymerase; Poly-Beta-Hydroxybutyrate Depolymerase

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MLYAWLEAQREFFRACQPWAGAAQRAGAGARPAGWPTWGPMARAADAVPAPPPFAIASIEIDGAAVPVDECVVDDTPFCA
LRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETILATRDVYVTDWRNARDVPPEAGAFGLDDYVCTLERFVAGAA
GDGLHMMAVCQATVPALAAVALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVA
HPQRRASLESRYWTAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQGRWSIGRRLVAPRRLTRTAL
CTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCDHYDLFLGPRWRRTIHPALDAFWTRAEAARAAAGEPRPTAE
RAERRIAH

Sequences:

>Translated_408_residues
MLYAWLEAQREFFRACQPWAGAAQRAGAGARPAGWPTWGPMARAADAVPAPPPFAIASIEIDGAAVPVDECVVDDTPFCA
LRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETILATRDVYVTDWRNARDVPPEAGAFGLDDYVCTLERFVAGAA
GDGLHMMAVCQATVPALAAVALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVA
HPQRRASLESRYWTAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQGRWSIGRRLVAPRRLTRTAL
CTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCDHYDLFLGPRWRRTIHPALDAFWTRAEAARAAAGEPRPTAE
RAERRIAH
>Mature_408_residues
MLYAWLEAQREFFRACQPWAGAAQRAGAGARPAGWPTWGPMARAADAVPAPPPFAIASIEIDGAAVPVDECVVDDTPFCA
LRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETILATRDVYVTDWRNARDVPPEAGAFGLDDYVCTLERFVAGAA
GDGLHMMAVCQATVPALAAVALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVA
HPQRRASLESRYWTAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQGRWSIGRRLVAPRRLTRTAL
CTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCDHYDLFLGPRWRRTIHPALDAFWTRAEAARAAAGEPRPTAE
RAERRIAH

Specific function: Unknown

COG id: COG4553

COG function: function code I; Poly-beta-hydroxyalkanoate depolymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.1.-

Molecular weight: Translated: 44943; Mature: 44943

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYAWLEAQREFFRACQPWAGAAQRAGAGARPAGWPTWGPMARAADAVPAPPPFAIASIE
CEEHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEE
IDGAAVPVDECVVDDTPFCALRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETIL
ECCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
ATRDVYVTDWRNARDVPPEAGAFGLDDYVCTLERFVAGAAGDGLHMMAVCQATVPALAAV
HCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVA
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCEEEEE
HPQRRASLESRYWTAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQ
CCHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
GRWSIGRRLVAPRRLTRTALCTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCD
CCHHHHHHHHCCHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
HYDLFLGPRWRRTIHPALDAFWTRAEAARAAAGEPRPTAERAERRIAH
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MLYAWLEAQREFFRACQPWAGAAQRAGAGARPAGWPTWGPMARAADAVPAPPPFAIASIE
CEEHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEE
IDGAAVPVDECVVDDTPFCALRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETIL
ECCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
ATRDVYVTDWRNARDVPPEAGAFGLDDYVCTLERFVAGAAGDGLHMMAVCQATVPALAAV
HCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVA
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCEEEEE
HPQRRASLESRYWTAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQ
CCHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
GRWSIGRRLVAPRRLTRTALCTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCD
CCHHHHHHHHCCHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
HYDLFLGPRWRRTIHPALDAFWTRAEAARAAAGEPRPTAERAERRIAH
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA