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The map label for this gene is ddpA [H]

Identifier: 126445727

GI number: 126445727

Start: 1004670

End: 1006262

Strand: Reverse

Name: ddpA [H]

Synonym: BMA10247_A1065

Alternate gene names: 126445727

Gene position: 1006262-1004670 (Counterclockwise)

Preceding gene: 126446538

Following gene: 126446324

Centisome position: 42.77

GC content: 65.85

Gene sequence:

>1593_bases
ATGAAGCACATGCTGTCCAAGCTCGCGGCGAGCGCCGCACTCGCCGCGCTGGCCCCGGTGCTGGCCCCCGCGCACGCGGC
CACGCCGCCCGGCATCTTCGTGATCGCGACGCAGCTCGGCGAATTCACGACGCTCGACCCGAGCGAAATCTACGAGCTCG
TGCCGTCCGAATACGTCGCGAACACGTACGAGCGGCTCGTGCGCGTCGACCTGCGCGAACCGTCGAAATTCGAAGGCCGG
ATCGCGCAATCGTGGAGCGTCGGCGCGGACGGCCTCACCTACACGTTCAAGCTGCGCACCGGCCTGAAGTTCCACTCGGG
CAATCCGGTGACGGCCGACGACGTGGCGTGGTCGCTGCAGCGCACGGTGCTGCTCGACAAAGGGCCGGCCGGCGTGCTCG
CGGACCTCGGCCTGACCAAGGACAACGTCGCGCGGAAGGTACGCAAGCTCGACGACACGACCGTGTCGATCGAGACCGAC
CGCCGGTACGCGCCGAGCTTCGTGCTGAACGTGCTGAGCGCGGACCCGGCATCGATCGTCGACAAGCAGTTGCTGCTCTC
GCACGAGAAGAACGGCGACTTCGGCAATGCATGGCTGAAGAACGCGGATGCCGGCTCGGGCCCGTACCGGCTCGTCAAGT
GGACGCCGAACGAAAGCCTCGTGCTGCAACGCTTCGACGGCTACCGCGCGCCGTATCCGATGAAGCGCATCGTGTTGCGG
CACGTGCCGGAAGCGTCCGCGCAGCGCCTGCTGCTCGAGAACGGCGACGTCGACGCCGCGCGCAACCTGAGCCCCGACAG
CCTTGCTGCGCTGTCGAAGGCGGGCAAGATCCACGTCGCGTCATGGCCCGTGTCCGCGCTGCTGTACCTGAGCCTGAACA
CGAGGAATCCGAATCTCGCGAAGCCCGAGGTGCAGGAAGCGATGAAGTGGCTCGTCGATTACGACGGCATCCAGCGCAAC
ATCGTCAGGACGACGTACAAGGTGCATCAGACCTTCCTGCCGGACGGCTTCCTCGGCGCGCTGGACGCGAATCCGTACCG
GCAGAACGTCGCGAAGGCGAAGGCGCTGCTCGCGAAGGCCGGCCTGCCGAACGGCTTCGCGGTAACGATGGACATGCCGA
ACGATTACCCGTACGTCGAGATCGCGCAGGCGTTGCAGGCGAACTTCGCGCAGGGCGGCATCCAGGTGAAGCTGATTCCG
GGCGACGCGAAACAGGCGATCGGCAAGTACCGTGCGCGCCAGCACGACATCTTCATCGGCGAATGGTCGCCGGACTACAT
GGACCCGAACAGCAACGCGCGCGGTTTCGCGTGGAATCCCGACAATTCGGACAACGCCAAGCACAAGCTGCTCGCGTGGC
GCAACGGCTGGGATGTGCCGCAACTGACCGCGAAGACCGATGCGGCGCTCGCCGAGCCGTCGGCCGCGAAGCGCGCGCAG
GACTATCAGGCGCTGCAAAAGGCGGTGCTCGCGAATTCGCCGTTCGTGATCCTGTTCGAGAAGGTCGTGCAGGTTGCGAC
GCGGCCGGGTGTCACGGGCCCGGAAATCGGGCCGATCAACGATCTCGTGTCGTATCGGACCTTGAAGAAGTAA

Upstream 100 bases:

>100_bases
TGACGCGGCGCAGCGGGGTCTCGCGCCGCGACGGCCGAGGTTTCTGGAACGCGCCCGGCAATGAGAGAATCGAGCTCGAT
ACCTTTTCGACGGAGTCTCG

Downstream 100 bases:

>100_bases
CCGCGTGGGCGCGGGCGCGCGCCGTCGCGAATCCGGCGGCGCGCTCGGCGGCGGGCGATCTTCGCGGCGATCCGGCCGCC
GCGCATCGCTCGCCGCGCGG

Product: solute-binding family 5 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MKHMLSKLAASAALAALAPVLAPAHAATPPGIFVIATQLGEFTTLDPSEIYELVPSEYVANTYERLVRVDLREPSKFEGR
IAQSWSVGADGLTYTFKLRTGLKFHSGNPVTADDVAWSLQRTVLLDKGPAGVLADLGLTKDNVARKVRKLDDTTVSIETD
RRYAPSFVLNVLSADPASIVDKQLLLSHEKNGDFGNAWLKNADAGSGPYRLVKWTPNESLVLQRFDGYRAPYPMKRIVLR
HVPEASAQRLLLENGDVDAARNLSPDSLAALSKAGKIHVASWPVSALLYLSLNTRNPNLAKPEVQEAMKWLVDYDGIQRN
IVRTTYKVHQTFLPDGFLGALDANPYRQNVAKAKALLAKAGLPNGFAVTMDMPNDYPYVEIAQALQANFAQGGIQVKLIP
GDAKQAIGKYRARQHDIFIGEWSPDYMDPNSNARGFAWNPDNSDNAKHKLLAWRNGWDVPQLTAKTDAALAEPSAAKRAQ
DYQALQKAVLANSPFVILFEKVVQVATRPGVTGPEIGPINDLVSYRTLKK

Sequences:

>Translated_530_residues
MKHMLSKLAASAALAALAPVLAPAHAATPPGIFVIATQLGEFTTLDPSEIYELVPSEYVANTYERLVRVDLREPSKFEGR
IAQSWSVGADGLTYTFKLRTGLKFHSGNPVTADDVAWSLQRTVLLDKGPAGVLADLGLTKDNVARKVRKLDDTTVSIETD
RRYAPSFVLNVLSADPASIVDKQLLLSHEKNGDFGNAWLKNADAGSGPYRLVKWTPNESLVLQRFDGYRAPYPMKRIVLR
HVPEASAQRLLLENGDVDAARNLSPDSLAALSKAGKIHVASWPVSALLYLSLNTRNPNLAKPEVQEAMKWLVDYDGIQRN
IVRTTYKVHQTFLPDGFLGALDANPYRQNVAKAKALLAKAGLPNGFAVTMDMPNDYPYVEIAQALQANFAQGGIQVKLIP
GDAKQAIGKYRARQHDIFIGEWSPDYMDPNSNARGFAWNPDNSDNAKHKLLAWRNGWDVPQLTAKTDAALAEPSAAKRAQ
DYQALQKAVLANSPFVILFEKVVQVATRPGVTGPEIGPINDLVSYRTLKK
>Mature_530_residues
MKHMLSKLAASAALAALAPVLAPAHAATPPGIFVIATQLGEFTTLDPSEIYELVPSEYVANTYERLVRVDLREPSKFEGR
IAQSWSVGADGLTYTFKLRTGLKFHSGNPVTADDVAWSLQRTVLLDKGPAGVLADLGLTKDNVARKVRKLDDTTVSIETD
RRYAPSFVLNVLSADPASIVDKQLLLSHEKNGDFGNAWLKNADAGSGPYRLVKWTPNESLVLQRFDGYRAPYPMKRIVLR
HVPEASAQRLLLENGDVDAARNLSPDSLAALSKAGKIHVASWPVSALLYLSLNTRNPNLAKPEVQEAMKWLVDYDGIQRN
IVRTTYKVHQTFLPDGFLGALDANPYRQNVAKAKALLAKAGLPNGFAVTMDMPNDYPYVEIAQALQANFAQGGIQVKLIP
GDAKQAIGKYRARQHDIFIGEWSPDYMDPNSNARGFAWNPDNSDNAKHKLLAWRNGWDVPQLTAKTDAALAEPSAAKRAQ
DYQALQKAVLANSPFVILFEKVVQVATRPGVTGPEIGPINDLVSYRTLKK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=538, Percent_Identity=31.2267657992565, Blast_Score=182, Evalue=4e-47,
Organism=Escherichia coli, GI1789966, Length=544, Percent_Identity=25.5514705882353, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1787052, Length=371, Percent_Identity=26.9541778975741, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1787551, Length=547, Percent_Identity=25.7769652650823, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1789887, Length=564, Percent_Identity=26.063829787234, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1789397, Length=554, Percent_Identity=24.5487364620939, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58084; Mature: 58084

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHMLSKLAASAALAALAPVLAPAHAATPPGIFVIATQLGEFTTLDPSEIYELVPSEYVA
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCHHHHH
NTYERLVRVDLREPSKFEGRIAQSWSVGADGLTYTFKLRTGLKFHSGNPVTADDVAWSLQ
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEECCCCCCHHHHHHHHH
RTVLLDKGPAGVLADLGLTKDNVARKVRKLDDTTVSIETDRRYAPSFVLNVLSADPASIV
HEEEEECCCCCCEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCHHHHH
DKQLLLSHEKNGDFGNAWLKNADAGSGPYRLVKWTPNESLVLQRFDGYRAPYPMKRIVLR
HHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHH
HVPEASAQRLLLENGDVDAARNLSPDSLAALSKAGKIHVASWPVSALLYLSLNTRNPNLA
HCCCHHHHHHHHCCCCCCHHCCCCHHHHHHHHHCCEEEEECCCCEEEEEEEEECCCCCCC
KPEVQEAMKWLVDYDGIQRNIVRTTYKVHQTFLPDGFLGALDANPYRQNVAKAKALLAKA
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHC
GLPNGFAVTMDMPNDYPYVEIAQALQANFAQGGIQVKLIPGDAKQAIGKYRARQHDIFIG
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCEEEE
EWSPDYMDPNSNARGFAWNPDNSDNAKHKLLAWRNGWDVPQLTAKTDAALAEPSAAKRAQ
CCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCCHHHHHHH
DYQALQKAVLANSPFVILFEKVVQVATRPGVTGPEIGPINDLVSYRTLKK
HHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MKHMLSKLAASAALAALAPVLAPAHAATPPGIFVIATQLGEFTTLDPSEIYELVPSEYVA
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCHHHHH
NTYERLVRVDLREPSKFEGRIAQSWSVGADGLTYTFKLRTGLKFHSGNPVTADDVAWSLQ
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEECCCCCCHHHHHHHHH
RTVLLDKGPAGVLADLGLTKDNVARKVRKLDDTTVSIETDRRYAPSFVLNVLSADPASIV
HEEEEECCCCCCEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCHHHHH
DKQLLLSHEKNGDFGNAWLKNADAGSGPYRLVKWTPNESLVLQRFDGYRAPYPMKRIVLR
HHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHH
HVPEASAQRLLLENGDVDAARNLSPDSLAALSKAGKIHVASWPVSALLYLSLNTRNPNLA
HCCCHHHHHHHHCCCCCCHHCCCCHHHHHHHHHCCEEEEECCCCEEEEEEEEECCCCCCC
KPEVQEAMKWLVDYDGIQRNIVRTTYKVHQTFLPDGFLGALDANPYRQNVAKAKALLAKA
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHC
GLPNGFAVTMDMPNDYPYVEIAQALQANFAQGGIQVKLIPGDAKQAIGKYRARQHDIFIG
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCEEEE
EWSPDYMDPNSNARGFAWNPDNSDNAKHKLLAWRNGWDVPQLTAKTDAALAEPSAAKRAQ
CCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCCHHHHHHH
DYQALQKAVLANSPFVILFEKVVQVATRPGVTGPEIGPINDLVSYRTLKK
HHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]