Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
---|---|
Accession | NC_009079 |
Length | 2,352,693 |
Click here to switch to the map view.
The map label for this gene is 126446500
Identifier: 126446500
GI number: 126446500
Start: 1979601
End: 1981034
Strand: Reverse
Name: 126446500
Synonym: BMA10247_A2041
Alternate gene names: NA
Gene position: 1981034-1979601 (Counterclockwise)
Preceding gene: 126445971
Following gene: 126446086
Centisome position: 84.2
GC content: 65.55
Gene sequence:
>1434_bases ATGGATGGAGAATTTTCGATGAAGCCGTTCGACGAAATGCTGCAACCCGGCGATACCGTACGAGCGCCGTATGAGCGCTT GAAGCAATGGCTGGACACGCAGGATCCCGCGAGCCTCGCGCAGAAGGCGCACGACGCCGAAGGCGTGTTCCGCAAGACCG GCATCACGTTCGCCGTGTATGGCGACGCCGAGGCCGCCGAGCGGCTGATTCCGTTCGACATCGTGCCGAGAATCATTTCG GGTAGCGAATGGAACCGGCTGTCGCAGGGAATCGAGCAGCGCGTGATGGCGCTCAACGCGTTCCTCGACGACATCTATCA CCGCCAGGAGATCGTGCGCGCGGGGATCGTGCCGAAGCATCTGATCGCGCACAACGATGCGTTCCTGCCGGAAATGATCG ACTTCCGGCCGCCCGGAAACGTTTACACGCACATCATCGGCGTGGACATCGTACGGACCGCTGAAAATCAGTTCTACGTG CTCGAGGACAACGCGCGCACGCCGTCCGGTGTGTCGTATATGCTCGAGAACCGCGAGACGATGATGCAGCTCTTTCCCGA GCTGTTCCAGCAGGTGAAGGTGCGGCCCGTCGAGACGTATCCGCAGTTGCTGCGCCAGTCGCTCGCGGCCGTCTGCCCTC CCGGCGGCAACGCCGACAATCCGACCGTCGCGGTGCTCACGCCCGGCATTCACAACTCCGCGTACTACGAGCATGCGTTC CTCGCCGATCAGATGGGCGTGCATCTCGTCGAGGGCAGCGATCTGCAGGTGATCGGCGATCGCGTCGCGATGCGCACGAC CGAAGGCTTTCGGCCGATCGACGTGCTGTACCGCCGCCTCGACGACGCGTTTCTCGATCCGCTCACGTTCCGGCCGGATT CGGTGCTGGGCGTGGCCGGCATCATGGACGTCTACCGTGCGGGCAACGTGACGATCGCCAACGCGCCCGGCACCGGCATC GCCGACGACAAGGCGATCTACTCGTACATGCCGGAGATCGTCGAGTTCTACACGGGCCGCCGCGCGATGCTCGAGAACGT GCCGACGTGGCGCTGCGCGGAAGCCGACAGCCTCGAGTACGTGCTCGCGCATCTGGAGGAGCTCGTCGTGAAGGAGGTGC ACGGCTCGGGCGGCTACGGGATGCTCGTCGGTCCCGCGGCATCGAAAGCCGAGCGCGACGCGTTCGCGGCGAAGCTGCGC GCGAAGCCGTCGAACTACATCGCGCAGCCGACGCTCGCGCTGTCGACGACGCCGATCCTGACCGAGCGGGGGCTCGCGCC GCGCCACGTCGACCTGCGGCCGTTCGTGCTCGTGTCCGACCGGATCCGCATCACGCCGGGCGGCCTCACGCGGGTCGCGC TGAAGGAGGGTTCGCTCGTCGTCAATTCCAGTCAGGGCGGCGGCACCAAGGACACCTGGGTGCTCGCCGACTGA
Upstream 100 bases:
>100_bases AAGTGCCAAATCAGACGGAAGCCGGGAGGATTCCAGCAAGGCACGCTCTTTGCTCATGAGTCATTGCGCCGGTTCGGCAT GGACAGAGGCCGAGTGAATG
Downstream 100 bases:
>100_bases GCGCACGCGCACGGCGGCGCTCGCGCGAACGCGTGCATGCTCGCGACGCGTTCGCGCGCGCCGCACCGAACAACGATCGG AGTGGACGGCAAACATGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 477; Mature: 477
Protein sequence:
>477_residues MDGEFSMKPFDEMLQPGDTVRAPYERLKQWLDTQDPASLAQKAHDAEGVFRKTGITFAVYGDAEAAERLIPFDIVPRIIS GSEWNRLSQGIEQRVMALNAFLDDIYHRQEIVRAGIVPKHLIAHNDAFLPEMIDFRPPGNVYTHIIGVDIVRTAENQFYV LEDNARTPSGVSYMLENRETMMQLFPELFQQVKVRPVETYPQLLRQSLAAVCPPGGNADNPTVAVLTPGIHNSAYYEHAF LADQMGVHLVEGSDLQVIGDRVAMRTTEGFRPIDVLYRRLDDAFLDPLTFRPDSVLGVAGIMDVYRAGNVTIANAPGTGI ADDKAIYSYMPEIVEFYTGRRAMLENVPTWRCAEADSLEYVLAHLEELVVKEVHGSGGYGMLVGPAASKAERDAFAAKLR AKPSNYIAQPTLALSTTPILTERGLAPRHVDLRPFVLVSDRIRITPGGLTRVALKEGSLVVNSSQGGGTKDTWVLAD
Sequences:
>Translated_477_residues MDGEFSMKPFDEMLQPGDTVRAPYERLKQWLDTQDPASLAQKAHDAEGVFRKTGITFAVYGDAEAAERLIPFDIVPRIIS GSEWNRLSQGIEQRVMALNAFLDDIYHRQEIVRAGIVPKHLIAHNDAFLPEMIDFRPPGNVYTHIIGVDIVRTAENQFYV LEDNARTPSGVSYMLENRETMMQLFPELFQQVKVRPVETYPQLLRQSLAAVCPPGGNADNPTVAVLTPGIHNSAYYEHAF LADQMGVHLVEGSDLQVIGDRVAMRTTEGFRPIDVLYRRLDDAFLDPLTFRPDSVLGVAGIMDVYRAGNVTIANAPGTGI ADDKAIYSYMPEIVEFYTGRRAMLENVPTWRCAEADSLEYVLAHLEELVVKEVHGSGGYGMLVGPAASKAERDAFAAKLR AKPSNYIAQPTLALSTTPILTERGLAPRHVDLRPFVLVSDRIRITPGGLTRVALKEGSLVVNSSQGGGTKDTWVLAD >Mature_477_residues MDGEFSMKPFDEMLQPGDTVRAPYERLKQWLDTQDPASLAQKAHDAEGVFRKTGITFAVYGDAEAAERLIPFDIVPRIIS GSEWNRLSQGIEQRVMALNAFLDDIYHRQEIVRAGIVPKHLIAHNDAFLPEMIDFRPPGNVYTHIIGVDIVRTAENQFYV LEDNARTPSGVSYMLENRETMMQLFPELFQQVKVRPVETYPQLLRQSLAAVCPPGGNADNPTVAVLTPGIHNSAYYEHAF LADQMGVHLVEGSDLQVIGDRVAMRTTEGFRPIDVLYRRLDDAFLDPLTFRPDSVLGVAGIMDVYRAGNVTIANAPGTGI ADDKAIYSYMPEIVEFYTGRRAMLENVPTWRCAEADSLEYVLAHLEELVVKEVHGSGGYGMLVGPAASKAERDAFAAKLR AKPSNYIAQPTLALSTTPILTERGLAPRHVDLRPFVLVSDRIRITPGGLTRVALKEGSLVVNSSQGGGTKDTWVLAD
Specific function: Unknown
COG id: COG2308
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.tuberculosis RV2411c [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007297 - InterPro: IPR007302 - InterPro: IPR016450 [H]
Pfam domain/function: PF04169 DUF404; PF04174 DUF407 [H]
EC number: NA
Molecular weight: Translated: 52740; Mature: 52740
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDGEFSMKPFDEMLQPGDTVRAPYERLKQWLDTQDPASLAQKAHDAEGVFRKTGITFAVY CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHCCEEEEEE GDAEAAERLIPFDIVPRIISGSEWNRLSQGIEQRVMALNAFLDDIYHRQEIVRAGIVPKH CCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH LIAHNDAFLPEMIDFRPPGNVYTHIIGVDIVRTAENQFYVLEDNARTPSGVSYMLENRET HHHCCCCCCHHHHCCCCCCCCEEEEEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHH MMQLFPELFQQVKVRPVETYPQLLRQSLAAVCPPGGNADNPTVAVLTPGIHNSAYYEHAF HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHH LADQMGVHLVEGSDLQVIGDRVAMRTTEGFRPIDVLYRRLDDAFLDPLTFRPDSVLGVAG HHHHCCEEEECCCCEEEECCHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHH IMDVYRAGNVTIANAPGTGIADDKAIYSYMPEIVEFYTGRRAMLENVPTWRCAEADSLEY HHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHH VLAHLEELVVKEVHGSGGYGMLVGPAASKAERDAFAAKLRAKPSNYIAQPTLALSTTPIL HHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCH TERGLAPRHVDLRPFVLVSDRIRITPGGLTRVALKEGSLVVNSSQGGGTKDTWVLAD HCCCCCCCCCCCCCEEEEECEEEECCCCCEEEEEECCCEEEECCCCCCCCCCEEEEC >Mature Secondary Structure MDGEFSMKPFDEMLQPGDTVRAPYERLKQWLDTQDPASLAQKAHDAEGVFRKTGITFAVY CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHCCEEEEEE GDAEAAERLIPFDIVPRIISGSEWNRLSQGIEQRVMALNAFLDDIYHRQEIVRAGIVPKH CCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH LIAHNDAFLPEMIDFRPPGNVYTHIIGVDIVRTAENQFYVLEDNARTPSGVSYMLENRET HHHCCCCCCHHHHCCCCCCCCEEEEEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHH MMQLFPELFQQVKVRPVETYPQLLRQSLAAVCPPGGNADNPTVAVLTPGIHNSAYYEHAF HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHH LADQMGVHLVEGSDLQVIGDRVAMRTTEGFRPIDVLYRRLDDAFLDPLTFRPDSVLGVAG HHHHCCEEEECCCCEEEECCHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHH IMDVYRAGNVTIANAPGTGIADDKAIYSYMPEIVEFYTGRRAMLENVPTWRCAEADSLEY HHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHH VLAHLEELVVKEVHGSGGYGMLVGPAASKAERDAFAAKLRAKPSNYIAQPTLALSTTPIL HHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCH TERGLAPRHVDLRPFVLVSDRIRITPGGLTRVALKEGSLVVNSSQGGGTKDTWVLAD HCCCCCCCCCCCCCEEEEECEEEECCCCCEEEEEECCCEEEECCCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1368738; 8590279; 8905231 [H]