Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is cirA [C]
Identifier: 126446338
GI number: 126446338
Start: 2020572
End: 2022875
Strand: Direct
Name: cirA [C]
Synonym: BMA10247_A2089
Alternate gene names: 126446338
Gene position: 2020572-2022875 (Clockwise)
Preceding gene: 126446299
Following gene: 126446611
Centisome position: 85.88
GC content: 68.62
Gene sequence:
>2304_bases TTGGCGCGGCGGCCGCTTCGCGCCGCGCTGTTCGGGGCCTTCGGCCTCTATGCGGCGGCCGCGCGCGCCGCCGGCCCCGC TTCCGAACCCGCGGCCGCCGCGCCGCCGGCCGCCGCATCCGCCGCATCCGCCGCATCCACGTCGCAGGTGCGGCACGCGG CGATCGCCGCCGCGCGCAAGGACGCGCCGGCACTCGATCCGATCACCGTCACCGCGACGCGCACCGCGTCGGCCGCGAGC CGCACCGCGGCGAGCGTATCGGTGATCACCGATTCAGACCTCGAGGAGCAGCAGGCCGACAACATCAAGGACGCGCTGCG CTACGAGCCGGGCGTCACCGTGCGACGCACCGCGTACCGCCCGGCGAACGCCGCGCTCGGCGGCGGCCGCGACGGCGATT CGAGCATCAACATCCGCGGCCTCGAAGGCAACCGCGTGCTGCTGATGGAAGACGGCATCCGGCTGCCGAGCGCGTTCTCG TTCGGCCCGCTCGAAGCCGGCCGCGGCGATTACGCCGATCTCGACACGCTCGCGCGCATCGAGATCCTGCGCGGTCCGGC GTCCGCGCTGTATGGCAGCGACGGCCTGACGGGCGCCGTCAACTTCATCACGAAAGATCCGTCCGATCTGCTGTCGATCC ATCGAAAAAAGACCTATTTCTCGTTCCGGCCGAGCTACGACTCGGTCGACCGCAGCATCGGCGCGACCGTGACGGCGGCG GGCGGCAACGATCGCGTGCAGGCGATGCTGATCGCGTCCGGCCGCCGCGGCCACGAACTCGACACGCACGGCGACGACAA TTCCGCGAGCACGCGGCGCACGCGCGCGAATCCTCAGGATGTCTACACGGAATCGCTGCTCGGCAAGCTGACGATCACGC CGACCGCGCGCGACACGATCAAGCTCGCCGCCGAAACGGTGCGGCGGCGGATCGACACGAACGTGCTGTCGGCGATCAAT CCGCCGACAACGCTCGGCCTCACCGCGAACGACAGGCTCGAGCGCAACCGCTTCAGTATCGACTACGATTTGCGCGACGC CGCCGCGCGCGGGTTCCAGACCGCGCACGTGCAGTTCTACTATCAGGAGTCGACGCAGGATCAGGACGCGTTCGAGACGC GCGGCGGGCGGCTCCAATCGCGTTCGCGCTCGAACCACTACAGCGAGCGCGCGCTCGGCGGCTCCGCGTTCGCCGAGAGC GGCTTCGCGACCGGGCCGCTCGCGCACAAGCTGCTGTACGGCGTCGACGGCAGCATCGACCGCATCAAGAGCCTGCGCGA GGGCACCGTCGCGAGCCCCGGCGAATCGTTCCCGAACAAGGCGTTTCCGGACACCGACTACTCGCTGTTCGGCGCGTTCG TGCAGGATCAGATCGGCTTCGGCAAGCTGCTCGTCACGCCGGGCCTGCGCTTCGACGCGTATCGGCTCAGCCCGAGCTCG GGCGATCCGCTGTTCACCGGCAAGACGGTCAGCTCGAGCGATCACGAGCTGTCGCCGCGCGTCGCGATGCTCTATGAAGC GTCGCCCGCGCTGATTCCCTACGCGCAGTATGCGCACGGCTTTCGCACGCCGACGCCCGATCAGGTCAACAACAGCTTCT CGAATCCGATCTATGGCTATACATCGATCGGCAATCCGAACCTGAAGCCCGAGACGAGCGACACGCTCGAAGCGGGCCTG CGCGGCACGCTCGGCACCGGCTACGGGCCGCTGCGCTACAGCGTCGCCGCGTTCGCCGGCCGCTATCGCAACTTCATCTC GCAGCGCACGGTAGGCGGCAGTGGCCGGCCGAACGATCCGCTCGTGTTCCAGTACGTAAACTTCGCGAACGCGCGCATTC ACGGCTTCGAGGGACGCGCCGAATGGGTGATGCCGAATGGCTTCACGCTGAAGACGGCGATGGCGTTCACGAAGGGCACG ACGCAGGACAACGGCGCGGCGAGCGAGCCGCTCGATACGGTCAACCCGTTCTCCGCCGTGTTCGGCGTGCGCTACGAGCC GAGCGAGCGCTGGTTCGCGCAGGCGGACCTGCTGTGGCAGGCGGGCAAGCGCGGCCGCGACGTGTCGTCGGCCGCGTGCC AGAAAAAGACCTGCTTCACGCCGCCGTCGTCGTTCGTCGTCGATCTGCGCGGCGGCTACCGCTTCAACAAGCACGTGAGC GCCTACCTCGGCATTCACAACCTGTTCGACCGCAAGTACTGGAACTGGTCGGACGTGCGCGGCATCGCCGCCGATTCGAA CGTGCTCGACGCATACACCGCCCCGGGCCGCAGCGTCGCGGTCAGCATGAAGGTGGATTTCTGA
Upstream 100 bases:
>100_bases CGCCGTCCAGACGCGCGGGCGCCAGCCAGGTGCACGCGTCACCCAGCCAGCCTCCGGGCTCAAACGTCACTGGGAGACCA ACACCGTGCATCAACCTCTG
Downstream 100 bases:
>100_bases TGCGGCCCGCACGCTTTTTTCCCAACCCGACCGCCCGGCAATCGAGGATCTCCGACATGATGAACACCGCCGCCCCCGCC GCTTCGCCCGCCCGCGCGCT
Product: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 767; Mature: 766
Protein sequence:
>767_residues MARRPLRAALFGAFGLYAAAARAAGPASEPAAAAPPAAASAASAASTSQVRHAAIAAARKDAPALDPITVTATRTASAAS RTAASVSVITDSDLEEQQADNIKDALRYEPGVTVRRTAYRPANAALGGGRDGDSSINIRGLEGNRVLLMEDGIRLPSAFS FGPLEAGRGDYADLDTLARIEILRGPASALYGSDGLTGAVNFITKDPSDLLSIHRKKTYFSFRPSYDSVDRSIGATVTAA GGNDRVQAMLIASGRRGHELDTHGDDNSASTRRTRANPQDVYTESLLGKLTITPTARDTIKLAAETVRRRIDTNVLSAIN PPTTLGLTANDRLERNRFSIDYDLRDAAARGFQTAHVQFYYQESTQDQDAFETRGGRLQSRSRSNHYSERALGGSAFAES GFATGPLAHKLLYGVDGSIDRIKSLREGTVASPGESFPNKAFPDTDYSLFGAFVQDQIGFGKLLVTPGLRFDAYRLSPSS GDPLFTGKTVSSSDHELSPRVAMLYEASPALIPYAQYAHGFRTPTPDQVNNSFSNPIYGYTSIGNPNLKPETSDTLEAGL RGTLGTGYGPLRYSVAAFAGRYRNFISQRTVGGSGRPNDPLVFQYVNFANARIHGFEGRAEWVMPNGFTLKTAMAFTKGT TQDNGAASEPLDTVNPFSAVFGVRYEPSERWFAQADLLWQAGKRGRDVSSAACQKKTCFTPPSSFVVDLRGGYRFNKHVS AYLGIHNLFDRKYWNWSDVRGIAADSNVLDAYTAPGRSVAVSMKVDF
Sequences:
>Translated_767_residues MARRPLRAALFGAFGLYAAAARAAGPASEPAAAAPPAAASAASAASTSQVRHAAIAAARKDAPALDPITVTATRTASAAS RTAASVSVITDSDLEEQQADNIKDALRYEPGVTVRRTAYRPANAALGGGRDGDSSINIRGLEGNRVLLMEDGIRLPSAFS FGPLEAGRGDYADLDTLARIEILRGPASALYGSDGLTGAVNFITKDPSDLLSIHRKKTYFSFRPSYDSVDRSIGATVTAA GGNDRVQAMLIASGRRGHELDTHGDDNSASTRRTRANPQDVYTESLLGKLTITPTARDTIKLAAETVRRRIDTNVLSAIN PPTTLGLTANDRLERNRFSIDYDLRDAAARGFQTAHVQFYYQESTQDQDAFETRGGRLQSRSRSNHYSERALGGSAFAES GFATGPLAHKLLYGVDGSIDRIKSLREGTVASPGESFPNKAFPDTDYSLFGAFVQDQIGFGKLLVTPGLRFDAYRLSPSS GDPLFTGKTVSSSDHELSPRVAMLYEASPALIPYAQYAHGFRTPTPDQVNNSFSNPIYGYTSIGNPNLKPETSDTLEAGL RGTLGTGYGPLRYSVAAFAGRYRNFISQRTVGGSGRPNDPLVFQYVNFANARIHGFEGRAEWVMPNGFTLKTAMAFTKGT TQDNGAASEPLDTVNPFSAVFGVRYEPSERWFAQADLLWQAGKRGRDVSSAACQKKTCFTPPSSFVVDLRGGYRFNKHVS AYLGIHNLFDRKYWNWSDVRGIAADSNVLDAYTAPGRSVAVSMKVDF >Mature_766_residues ARRPLRAALFGAFGLYAAAARAAGPASEPAAAAPPAAASAASAASTSQVRHAAIAAARKDAPALDPITVTATRTASAASR TAASVSVITDSDLEEQQADNIKDALRYEPGVTVRRTAYRPANAALGGGRDGDSSINIRGLEGNRVLLMEDGIRLPSAFSF GPLEAGRGDYADLDTLARIEILRGPASALYGSDGLTGAVNFITKDPSDLLSIHRKKTYFSFRPSYDSVDRSIGATVTAAG GNDRVQAMLIASGRRGHELDTHGDDNSASTRRTRANPQDVYTESLLGKLTITPTARDTIKLAAETVRRRIDTNVLSAINP PTTLGLTANDRLERNRFSIDYDLRDAAARGFQTAHVQFYYQESTQDQDAFETRGGRLQSRSRSNHYSERALGGSAFAESG FATGPLAHKLLYGVDGSIDRIKSLREGTVASPGESFPNKAFPDTDYSLFGAFVQDQIGFGKLLVTPGLRFDAYRLSPSSG DPLFTGKTVSSSDHELSPRVAMLYEASPALIPYAQYAHGFRTPTPDQVNNSFSNPIYGYTSIGNPNLKPETSDTLEAGLR GTLGTGYGPLRYSVAAFAGRYRNFISQRTVGGSGRPNDPLVFQYVNFANARIHGFEGRAEWVMPNGFTLKTAMAFTKGTT QDNGAASEPLDTVNPFSAVFGVRYEPSERWFAQADLLWQAGKRGRDVSSAACQKKTCFTPPSSFVVDLRGGYRFNKHVSA YLGIHNLFDRKYWNWSDVRGIAADSNVLDAYTAPGRSVAVSMKVDF
Specific function: Acts as a receptor for hemoglobin or the hemoglobin/haptoglobin complex of the human host and is required for heme uptake [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family. Hemoglobin/haptoglobin binding protein subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=703, Percent_Identity=25.0355618776671, Blast_Score=109, Evalue=6e-25, Organism=Escherichia coli, GI1790405, Length=166, Percent_Identity=34.9397590361446, Blast_Score=76, Evalue=8e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR006970 - InterPro: IPR000531 - InterPro: IPR010949 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF04886 PT; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 82521; Mature: 82390
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARRPLRAALFGAFGLYAAAARAAGPASEPAAAAPPAAASAASAASTSQVRHAAIAAARK CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC DAPALDPITVTATRTASAASRTAASVSVITDSDLEEQQADNIKDALRYEPGVTVRRTAYR CCCCCCCEEEEEECCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCC PANAALGGGRDGDSSINIRGLEGNRVLLMEDGIRLPSAFSFGPLEAGRGDYADLDTLARI CCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH EILRGPASALYGSDGLTGAVNFITKDPSDLLSIHRKKTYFSFRPSYDSVDRSIGATVTAA HHHCCCHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHEEEEECCCHHHHHHHCCCEEEEC GGNDRVQAMLIASGRRGHELDTHGDDNSASTRRTRANPQDVYTESLLGKLTITPTARDTI CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCEEEECCCCHHHH KLAAETVRRRIDTNVLSAINPPTTLGLTANDRLERNRFSIDYDLRDAAARGFQTAHVQFY HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEECHHHHHHCCCEEEEEEEE YQESTQDQDAFETRGGRLQSRSRSNHYSERALGGSAFAESGFATGPLAHKLLYGVDGSID ECCCCCCHHHHHHCCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCHHHHHHHHCCCCCHH RIKSLREGTVASPGESFPNKAFPDTDYSLFGAFVQDQIGFGKLLVTPGLRFDAYRLSPSS HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCC GDPLFTGKTVSSSDHELSPRVAMLYEASPALIPYAQYAHGFRTPTPDQVNNSFSNPIYGY CCCEEECCCCCCCCCCCCCCEEEEEECCCCEECHHHHHCCCCCCCCHHHCCCCCCCCEEE TSIGNPNLKPETSDTLEAGLRGTLGTGYGPLRYSVAAFAGRYRNFISQRTVGGSGRPNDP ECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC LVFQYVNFANARIHGFEGRAEWVMPNGFTLKTAMAFTKGTTQDNGAASEPLDTVNPFSAV EEEEEECCCCCEEECCCCCEEEECCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCHHHHH FGVRYEPSERWFAQADLLWQAGKRGRDVSSAACQKKTCFTPPSSFVVDLRGGYRFNKHVS HCCEECCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCEEEECCCCEEECCHHH AYLGIHNLFDRKYWNWSDVRGIAADSNVLDAYTAPGRSVAVSMKVDF HHHHHHHHHHCCCCCHHHCCCEECCCCEEECCCCCCCEEEEEEEECC >Mature Secondary Structure ARRPLRAALFGAFGLYAAAARAAGPASEPAAAAPPAAASAASAASTSQVRHAAIAAARK CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC DAPALDPITVTATRTASAASRTAASVSVITDSDLEEQQADNIKDALRYEPGVTVRRTAYR CCCCCCCEEEEEECCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCC PANAALGGGRDGDSSINIRGLEGNRVLLMEDGIRLPSAFSFGPLEAGRGDYADLDTLARI CCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH EILRGPASALYGSDGLTGAVNFITKDPSDLLSIHRKKTYFSFRPSYDSVDRSIGATVTAA HHHCCCHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHEEEEECCCHHHHHHHCCCEEEEC GGNDRVQAMLIASGRRGHELDTHGDDNSASTRRTRANPQDVYTESLLGKLTITPTARDTI CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCEEEECCCCHHHH KLAAETVRRRIDTNVLSAINPPTTLGLTANDRLERNRFSIDYDLRDAAARGFQTAHVQFY HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEECHHHHHHCCCEEEEEEEE YQESTQDQDAFETRGGRLQSRSRSNHYSERALGGSAFAESGFATGPLAHKLLYGVDGSID ECCCCCCHHHHHHCCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCHHHHHHHHCCCCCHH RIKSLREGTVASPGESFPNKAFPDTDYSLFGAFVQDQIGFGKLLVTPGLRFDAYRLSPSS HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCC GDPLFTGKTVSSSDHELSPRVAMLYEASPALIPYAQYAHGFRTPTPDQVNNSFSNPIYGY CCCEEECCCCCCCCCCCCCCEEEEEECCCCEECHHHHHCCCCCCCCHHHCCCCCCCCEEE TSIGNPNLKPETSDTLEAGLRGTLGTGYGPLRYSVAAFAGRYRNFISQRTVGGSGRPNDP ECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC LVFQYVNFANARIHGFEGRAEWVMPNGFTLKTAMAFTKGTTQDNGAASEPLDTVNPFSAV EEEEEECCCCCEEECCCCCEEEECCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCHHHHH FGVRYEPSERWFAQADLLWQAGKRGRDVSSAACQKKTCFTPPSSFVVDLRGGYRFNKHVS HCCEECCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCEEEECCCCEEECCHHH AYLGIHNLFDRKYWNWSDVRGIAADSNVLDAYTAPGRSVAVSMKVDF HHHHHHHHHHCCCCCHHHCCCEECCCCEEECCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]