Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is yafC [H]
Identifier: 126446301
GI number: 126446301
Start: 1119189
End: 1120160
Strand: Direct
Name: yafC [H]
Synonym: BMA10247_A1142
Alternate gene names: 126446301
Gene position: 1119189-1120160 (Clockwise)
Preceding gene: 126447639
Following gene: 262192889
Centisome position: 47.57
GC content: 68.62
Gene sequence:
>972_bases ATGGACATGCTCGATAACATGCGCCTGTTCGTGCGCGTCGTCGAAGCCGGCAGTTTCACCGCGGTCGCGAAGGAAATCGA CGCGACCACGGCCCAGGTGTCGCGCGCCGTTTCGAATCTCGAAGCGCACGTGCAGACGCGCCTCCTGCACCGCACGACCC GTCACCTCGGGTTGACCGAGAGCGGCCAGCGCTACTTCGAGCGCGCGAAGTCGATCCTCGCGGAGATCGACTATGCGAAC GCCGAGGCGCGCAACGCGCTGCTGCGGCCGAGCGGCAAGCTGCGCATCCATGCGATGACGGGGCTCGGGCAGAGCCACGT GGTGTCGTCGATCGTCCGCTATCAGGAAGACAATCCGGACGTGTCGGTCGAGCTCACGCTCGCGCAGCGCATGCCGAATC TCGTCGAGGAGGGCTACGACGTGTCGATCGTGTCGGCGTCGCATCTGCCCGATTCGGGCTATGTCGCGCAGACCTGCGGG ACGAGCTGCAGCGTGCTCGTCGCGTCGCGCGAGTATCTCGCCCGGCACGGCACGCCGACCACGCCCGACGATCTCGCGAA GCACGTGTGCCTGCGGCTCGACACGCCGGCCTCGCCGGGCGGCGAGTGGCGGCTCGAGCGCGACGACGGCGACGAGACCG TCTACGCGCTGCCGCCCGCGCCGTTCCAGGCGAACGTGCCGGATGCGTTGTCGGTGGCGGTGCGCGCGGGCCGCGGGATC GGCTCGATCGCGCTGTACACGGCGCTCGACGACATCCGCGAAGGGCGGCTCGTGCGCGTGCTGCCGAACTACCGGCTCGA TACGCTGAGCGTGTACGCGGTCTATGCGACGCGCCGCTATCTCGACGCGAAGATCCGCACGTTCCTCGACCATCTGCGCA CGACGCTCGCGCCCGCGCTCGAAAACGATCTGAAGGAGCTCAACCGGCTGAACGGCGGCGTGGGGAAGAAGGCGCTGCGC GAGGTCGCGTAG
Upstream 100 bases:
>100_bases GGCCCGCGCATCCGGTCGATCAGTCGTCCCCGGCCGCGCATCGCGGCGCTCGCCGCTTCCCGCCGGCCGTTGTTCCCCAT TCATTCCCGAAGCCCATCCC
Downstream 100 bases:
>100_bases CGGCGGCGGGCGCGACGCCGCGGATGGCGTGGCGTCGCGTGTCGCGTGTCGGTTCGCGCGCCGCAGGGCGGGCGTGACGC GTCGCGCGATACGAAGCGGT
Product: LysR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 323; Mature: 323
Protein sequence:
>323_residues MDMLDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQRYFERAKSILAEIDYAN AEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCG TSCSVLVASREYLARHGTPTTPDDLAKHVCLRLDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRGI GSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHLRTTLAPALENDLKELNRLNGGVGKKALR EVA
Sequences:
>Translated_323_residues MDMLDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQRYFERAKSILAEIDYAN AEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCG TSCSVLVASREYLARHGTPTTPDDLAKHVCLRLDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRGI GSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHLRTTLAPALENDLKELNRLNGGVGKKALR EVA >Mature_323_residues MDMLDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQRYFERAKSILAEIDYAN AEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCG TSCSVLVASREYLARHGTPTTPDDLAKHVCLRLDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRGI GSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHLRTTLAPALENDLKELNRLNGGVGKKALR EVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=35.7388316151203, Blast_Score=160, Evalue=9e-41, Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=31.1643835616438, Blast_Score=150, Evalue=1e-37, Organism=Escherichia coli, GI87081978, Length=302, Percent_Identity=29.8013245033113, Blast_Score=140, Evalue=1e-34, Organism=Escherichia coli, GI145693193, Length=303, Percent_Identity=31.023102310231, Blast_Score=139, Evalue=4e-34, Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=29.2682926829268, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1787128, Length=295, Percent_Identity=29.1525423728814, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1787589, Length=286, Percent_Identity=26.5734265734266, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1788481, Length=299, Percent_Identity=23.7458193979933, Blast_Score=65, Evalue=7e-12,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000847 - InterPro: IPR005119 - InterPro: IPR011991 [H]
Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]
EC number: NA
Molecular weight: Translated: 35492; Mature: 35492
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: PS50931 HTH_LYSR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDMLDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTE CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SGQRYFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPD HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC VSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTPT EEEEEEHHHHCHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCCEEEHHHHHHHHHCCCCC TPDDLAKHVCLRLDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRGI CHHHHHHHHHEEECCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCC GSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHLRTTLAPAL CHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENDLKELNRLNGGVGKKALREVA HHHHHHHHHHCCCCCHHHHHHCC >Mature Secondary Structure MDMLDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTE CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SGQRYFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPD HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC VSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTPT EEEEEEHHHHCHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCCEEEHHHHHHHHHCCCCC TPDDLAKHVCLRLDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRGI CHHHHHHHHHEEECCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCC GSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHLRTTLAPAL CHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENDLKELNRLNGGVGKKALREVA HHHHHHHHHHCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]