Definition Burkholderia mallei NCTC 10247 chromosome II, complete genome.
Accession NC_009079
Length 2,352,693

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The map label for this gene is yafC [H]

Identifier: 126446301

GI number: 126446301

Start: 1119189

End: 1120160

Strand: Direct

Name: yafC [H]

Synonym: BMA10247_A1142

Alternate gene names: 126446301

Gene position: 1119189-1120160 (Clockwise)

Preceding gene: 126447639

Following gene: 262192889

Centisome position: 47.57

GC content: 68.62

Gene sequence:

>972_bases
ATGGACATGCTCGATAACATGCGCCTGTTCGTGCGCGTCGTCGAAGCCGGCAGTTTCACCGCGGTCGCGAAGGAAATCGA
CGCGACCACGGCCCAGGTGTCGCGCGCCGTTTCGAATCTCGAAGCGCACGTGCAGACGCGCCTCCTGCACCGCACGACCC
GTCACCTCGGGTTGACCGAGAGCGGCCAGCGCTACTTCGAGCGCGCGAAGTCGATCCTCGCGGAGATCGACTATGCGAAC
GCCGAGGCGCGCAACGCGCTGCTGCGGCCGAGCGGCAAGCTGCGCATCCATGCGATGACGGGGCTCGGGCAGAGCCACGT
GGTGTCGTCGATCGTCCGCTATCAGGAAGACAATCCGGACGTGTCGGTCGAGCTCACGCTCGCGCAGCGCATGCCGAATC
TCGTCGAGGAGGGCTACGACGTGTCGATCGTGTCGGCGTCGCATCTGCCCGATTCGGGCTATGTCGCGCAGACCTGCGGG
ACGAGCTGCAGCGTGCTCGTCGCGTCGCGCGAGTATCTCGCCCGGCACGGCACGCCGACCACGCCCGACGATCTCGCGAA
GCACGTGTGCCTGCGGCTCGACACGCCGGCCTCGCCGGGCGGCGAGTGGCGGCTCGAGCGCGACGACGGCGACGAGACCG
TCTACGCGCTGCCGCCCGCGCCGTTCCAGGCGAACGTGCCGGATGCGTTGTCGGTGGCGGTGCGCGCGGGCCGCGGGATC
GGCTCGATCGCGCTGTACACGGCGCTCGACGACATCCGCGAAGGGCGGCTCGTGCGCGTGCTGCCGAACTACCGGCTCGA
TACGCTGAGCGTGTACGCGGTCTATGCGACGCGCCGCTATCTCGACGCGAAGATCCGCACGTTCCTCGACCATCTGCGCA
CGACGCTCGCGCCCGCGCTCGAAAACGATCTGAAGGAGCTCAACCGGCTGAACGGCGGCGTGGGGAAGAAGGCGCTGCGC
GAGGTCGCGTAG

Upstream 100 bases:

>100_bases
GGCCCGCGCATCCGGTCGATCAGTCGTCCCCGGCCGCGCATCGCGGCGCTCGCCGCTTCCCGCCGGCCGTTGTTCCCCAT
TCATTCCCGAAGCCCATCCC

Downstream 100 bases:

>100_bases
CGGCGGCGGGCGCGACGCCGCGGATGGCGTGGCGTCGCGTGTCGCGTGTCGGTTCGCGCGCCGCAGGGCGGGCGTGACGC
GTCGCGCGATACGAAGCGGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MDMLDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQRYFERAKSILAEIDYAN
AEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCG
TSCSVLVASREYLARHGTPTTPDDLAKHVCLRLDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRGI
GSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHLRTTLAPALENDLKELNRLNGGVGKKALR
EVA

Sequences:

>Translated_323_residues
MDMLDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQRYFERAKSILAEIDYAN
AEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCG
TSCSVLVASREYLARHGTPTTPDDLAKHVCLRLDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRGI
GSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHLRTTLAPALENDLKELNRLNGGVGKKALR
EVA
>Mature_323_residues
MDMLDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQRYFERAKSILAEIDYAN
AEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCG
TSCSVLVASREYLARHGTPTTPDDLAKHVCLRLDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRGI
GSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHLRTTLAPALENDLKELNRLNGGVGKKALR
EVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=35.7388316151203, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=31.1643835616438, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI87081978, Length=302, Percent_Identity=29.8013245033113, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI145693193, Length=303, Percent_Identity=31.023102310231, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=29.2682926829268, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787128, Length=295, Percent_Identity=29.1525423728814, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787589, Length=286, Percent_Identity=26.5734265734266, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1788481, Length=299, Percent_Identity=23.7458193979933, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35492; Mature: 35492

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMLDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTE
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SGQRYFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPD
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC
VSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTPT
EEEEEEHHHHCHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCCEEEHHHHHHHHHCCCCC
TPDDLAKHVCLRLDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRGI
CHHHHHHHHHEEECCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCC
GSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHLRTTLAPAL
CHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENDLKELNRLNGGVGKKALREVA
HHHHHHHHHHCCCCCHHHHHHCC
>Mature Secondary Structure
MDMLDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTE
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SGQRYFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPD
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC
VSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTPT
EEEEEEHHHHCHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCCEEEHHHHHHHHHCCCCC
TPDDLAKHVCLRLDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRGI
CHHHHHHHHHEEECCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCC
GSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHLRTTLAPAL
CHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENDLKELNRLNGGVGKKALREVA
HHHHHHHHHHCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]