Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is yjcG [C]
Identifier: 126446259
GI number: 126446259
Start: 1988448
End: 1990463
Strand: Reverse
Name: yjcG [C]
Synonym: BMA10247_A2052
Alternate gene names: 126446259
Gene position: 1990463-1988448 (Counterclockwise)
Preceding gene: 126447916
Following gene: 126445971
Centisome position: 84.6
GC content: 67.41
Gene sequence:
>2016_bases ATGCTGACGAATCGGCTGGTTCGCGCGTACGCGCTGTACACGATCGGCTTCGCCGCGTTCGTGCTGCTGCTGTGGCGGAT CGAGCGCGCGACCGGGCCGGGCGTGTGGATCGGCTATGTGTTCCTGTTCGTGCCGATCGCGGTCTATGCGGTGATCGGGC TGCTGTCGCGGACATCGGACCTCGTCGAATACTACGTGGCCGGGCGGCGCGTGCCGTCCGCGTTCAACGGCATGGCGACC GCCGCCGACTGGCTGTCCGCGGCGTCGTTCATCGGCCTCGCGGGCTCGCTGTACGCGACCGGTTACGACGCGCTCGCGTA CCTGATGGGCTGGACGGGTGGTTTCTGCCTCGTTGCGTTCCTGCTCGCGCCATACGTGCGCAAGCTCGCGCGCTACACGA TTCCCGATTTTCTGGGCACGCGCTTTTCGAGCACGCTCGTCAGGGCGCTCGCGGCGATCGCCGCGATCCTGTGCTCGTTC GTCTACCTGGTCGCGCAGATACAGGGCATCGGCCTCATCGCGACGCGCTTCATCGGCGTCGATTTCTCGATCGGCATCTT CTGCGGCCTCGCGGGGATTCTCGTGTGCTCGTTTCTGGGCGGGATGCGGGCGGTCACGTGGACGCAGGTCGCGCAGTACA TCATCCTGATCATTGCGTTCCTGCTGCCGGTTTCGCTGATCGCGATGAAGAACGGCCTCGGGCCCGTGCCGCAATTCAAT TACGGCCATCTGATGTCGCGGGTCGAAACGCTCGAGGGCGAGATGCGCGACGCGCCGCAGGAGCGGCAGGTGCGCGAGAC GTATCGTCGGCAGGCGGGCGCGATCCAGGCGAGGCTCGACCGGCTGCCGGCGTCTTACGACGAGGCGCGCGCGAAGCTGG TCGATCAGGTCGCCGAGCTGCGCCGGCACAACGGGCCGCTGCGCGAGATCAACCAGCGCGAACGCGCACTTGCCGAGTTT CCGCGCGATCCGGCGGCGGCGCGGGTGGTGTGGGAGCAGGCGCGCGACGAACTGCTCGCGCGCGCGGCGGCCCCGGTGCC GATGCACGAGCCGTTTCCGGCCGCGAGCGGCGACGATCGCCGCCCGCGCGGGCGCAACTTCCTCGCGCTGCTGCTGTGCC TGTCGCTCGGCACGGCGAGCCTGCCGCACATCCTGACGCGCTACAACACGACGACCTCGGTGGCGGCTGCGCGGCGCTCG GTGGGCTGGACGCTGTTTTTCATCGCGCTGTTCTATTTGACGGTGCCGGTGCTCGCGGTGCTGATCAAGTACGAGATCCT GACGAATCTGGTGGGGCGGCCGTTCGCCGATCTGCCCGCGTGGATCACGCAATGGCACCGTTTCGAGCCGGGGCTCATCG GCGTTACCGACCTGTTGCGCGACGGCATTGTCCATTGGTCGGAGATCCAGATGCAGCCCGATATCGTCGTGCTCGCGGCG CCGGAGATTGCGGGGCTGCCGTATGTGGTGTCGGGGCTGATCGCGGCGGGCGCGCTTGCCGCGGCGCTGTCGACGGCGGA CGGGCTGCTGCTGACGATCGCGAACGCGCTGTCGCACGACGTCTACTACCACATGGTTGCGCCGGACGCGTCGAGCCAGC GGCGCGTGACGATCTCGAAGGTGCTGTTGCTCGGCGTCGCGCTGTTTGCGTCGTATGTTGCGTCGCTGAATACGGGGAAG ATTCTGTTTCTTGTCGGGGCGGCGTTCTCGCTCGCGGCGTCGAGTTTCTTTCCGGTGCTCGTGCTGGGCGTGTTCTGGAA GCGCACGACGACGCGCGGCGCGGTGGCGGGGATGATGACGGGGCTTGGCGTGTGCGTGTACTACATCGTGTCGACGTATC CGTTCTTCACGCAGATCACGGGCTTCGCGGGGCCGGGCTGGCTCGGCATCGAGCCGATCAGCTTGGGCGTGTTCGGCGTG CCGGCCGGGTTTGCGACGGCGATCGTCGTGAGCCTGCTGGATCGGCGGCCGGATGCGTACACGAACGCGCTTGTCGACTA TATCCGGCACCCGTGA
Upstream 100 bases:
>100_bases TCGTGCTGATGCAGCGCGCGGACCGGGTCCTGCGGCGCGACTACGACGCGTACGCGGCCGAAGCGAAGCGCCGCGCCGCC GCCTCGACGGACGCCGACGC
Downstream 100 bases:
>100_bases CGGGTGGTTTTCGCCGGGGCTGGCGGCACGGCTGCGGAGTTTGCTATACTTGCCGTCTTCCCGGAGAGATGGATGAGTGG TTTAAGTCGCACGCCTGGAA
Product: solute/sodium symporter (SSS) family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 671; Mature: 671
Protein sequence:
>671_residues MLTNRLVRAYALYTIGFAAFVLLLWRIERATGPGVWIGYVFLFVPIAVYAVIGLLSRTSDLVEYYVAGRRVPSAFNGMAT AADWLSAASFIGLAGSLYATGYDALAYLMGWTGGFCLVAFLLAPYVRKLARYTIPDFLGTRFSSTLVRALAAIAAILCSF VYLVAQIQGIGLIATRFIGVDFSIGIFCGLAGILVCSFLGGMRAVTWTQVAQYIILIIAFLLPVSLIAMKNGLGPVPQFN YGHLMSRVETLEGEMRDAPQERQVRETYRRQAGAIQARLDRLPASYDEARAKLVDQVAELRRHNGPLREINQRERALAEF PRDPAAARVVWEQARDELLARAAAPVPMHEPFPAASGDDRRPRGRNFLALLLCLSLGTASLPHILTRYNTTTSVAAARRS VGWTLFFIALFYLTVPVLAVLIKYEILTNLVGRPFADLPAWITQWHRFEPGLIGVTDLLRDGIVHWSEIQMQPDIVVLAA PEIAGLPYVVSGLIAAGALAAALSTADGLLLTIANALSHDVYYHMVAPDASSQRRVTISKVLLLGVALFASYVASLNTGK ILFLVGAAFSLAASSFFPVLVLGVFWKRTTTRGAVAGMMTGLGVCVYYIVSTYPFFTQITGFAGPGWLGIEPISLGVFGV PAGFATAIVVSLLDRRPDAYTNALVDYIRHP
Sequences:
>Translated_671_residues MLTNRLVRAYALYTIGFAAFVLLLWRIERATGPGVWIGYVFLFVPIAVYAVIGLLSRTSDLVEYYVAGRRVPSAFNGMAT AADWLSAASFIGLAGSLYATGYDALAYLMGWTGGFCLVAFLLAPYVRKLARYTIPDFLGTRFSSTLVRALAAIAAILCSF VYLVAQIQGIGLIATRFIGVDFSIGIFCGLAGILVCSFLGGMRAVTWTQVAQYIILIIAFLLPVSLIAMKNGLGPVPQFN YGHLMSRVETLEGEMRDAPQERQVRETYRRQAGAIQARLDRLPASYDEARAKLVDQVAELRRHNGPLREINQRERALAEF PRDPAAARVVWEQARDELLARAAAPVPMHEPFPAASGDDRRPRGRNFLALLLCLSLGTASLPHILTRYNTTTSVAAARRS VGWTLFFIALFYLTVPVLAVLIKYEILTNLVGRPFADLPAWITQWHRFEPGLIGVTDLLRDGIVHWSEIQMQPDIVVLAA PEIAGLPYVVSGLIAAGALAAALSTADGLLLTIANALSHDVYYHMVAPDASSQRRVTISKVLLLGVALFASYVASLNTGK ILFLVGAAFSLAASSFFPVLVLGVFWKRTTTRGAVAGMMTGLGVCVYYIVSTYPFFTQITGFAGPGWLGIEPISLGVFGV PAGFATAIVVSLLDRRPDAYTNALVDYIRHP >Mature_671_residues MLTNRLVRAYALYTIGFAAFVLLLWRIERATGPGVWIGYVFLFVPIAVYAVIGLLSRTSDLVEYYVAGRRVPSAFNGMAT AADWLSAASFIGLAGSLYATGYDALAYLMGWTGGFCLVAFLLAPYVRKLARYTIPDFLGTRFSSTLVRALAAIAAILCSF VYLVAQIQGIGLIATRFIGVDFSIGIFCGLAGILVCSFLGGMRAVTWTQVAQYIILIIAFLLPVSLIAMKNGLGPVPQFN YGHLMSRVETLEGEMRDAPQERQVRETYRRQAGAIQARLDRLPASYDEARAKLVDQVAELRRHNGPLREINQRERALAEF PRDPAAARVVWEQARDELLARAAAPVPMHEPFPAASGDDRRPRGRNFLALLLCLSLGTASLPHILTRYNTTTSVAAARRS VGWTLFFIALFYLTVPVLAVLIKYEILTNLVGRPFADLPAWITQWHRFEPGLIGVTDLLRDGIVHWSEIQMQPDIVVLAA PEIAGLPYVVSGLIAAGALAAALSTADGLLLTIANALSHDVYYHMVAPDASSQRRVTISKVLLLGVALFASYVASLNTGK ILFLVGAAFSLAASSFFPVLVLGVFWKRTTTRGAVAGMMTGLGVCVYYIVSTYPFFTQITGFAGPGWLGIEPISLGVFGV PAGFATAIVVSLLDRRPDAYTNALVDYIRHP
Specific function: Unknown
COG id: COG4147
COG function: function code R; Predicted symporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]
Homologues:
Organism=Escherichia coli, GI1790503, Length=164, Percent_Identity=33.5365853658537, Blast_Score=100, Evalue=3e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001734 - InterPro: IPR019899 [H]
Pfam domain/function: PF00474 SSF [H]
EC number: NA
Molecular weight: Translated: 72989; Mature: 72989
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: PS00457 NA_SOLUT_SYMP_2 ; PS50283 NA_SOLUT_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTNRLVRAYALYTIGFAAFVLLLWRIERATGPGVWIGYVFLFVPIAVYAVIGLLSRTSD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LVEYYVAGRRVPSAFNGMATAADWLSAASFIGLAGSLYATGYDALAYLMGWTGGFCLVAF HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH LLAPYVRKLARYTIPDFLGTRFSSTLVRALAAIAAILCSFVYLVAQIQGIGLIATRFIGV HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC DFSIGIFCGLAGILVCSFLGGMRAVTWTQVAQYIILIIAFLLPVSLIAMKNGLGPVPQFN CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC YGHLMSRVETLEGEMRDAPQERQVRETYRRQAGAIQARLDRLPASYDEARAKLVDQVAEL HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RRHNGPLREINQRERALAEFPRDPAAARVVWEQARDELLARAAAPVPMHEPFPAASGDDR HHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC RPRGRNFLALLLCLSLGTASLPHILTRYNTTTSVAAARRSVGWTLFFIALFYLTVPVLAV CCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH LIKYEILTNLVGRPFADLPAWITQWHRFEPGLIGVTDLLRDGIVHWSEIQMQPDIVVLAA HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHEECCCEEEEEC PEIAGLPYVVSGLIAAGALAAALSTADGLLLTIANALSHDVYYHMVAPDASSQRRVTISK CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHH VLLLGVALFASYVASLNTGKILFLVGAAFSLAASSFFPVLVLGVFWKRTTTRGAVAGMMT HHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH GLGVCVYYIVSTYPFFTQITGFAGPGWLGIEPISLGVFGVPAGFATAIVVSLLDRRPDAY HHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCHH TNALVDYIRHP HHHHHHHHCCC >Mature Secondary Structure MLTNRLVRAYALYTIGFAAFVLLLWRIERATGPGVWIGYVFLFVPIAVYAVIGLLSRTSD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LVEYYVAGRRVPSAFNGMATAADWLSAASFIGLAGSLYATGYDALAYLMGWTGGFCLVAF HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH LLAPYVRKLARYTIPDFLGTRFSSTLVRALAAIAAILCSFVYLVAQIQGIGLIATRFIGV HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC DFSIGIFCGLAGILVCSFLGGMRAVTWTQVAQYIILIIAFLLPVSLIAMKNGLGPVPQFN CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC YGHLMSRVETLEGEMRDAPQERQVRETYRRQAGAIQARLDRLPASYDEARAKLVDQVAEL HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RRHNGPLREINQRERALAEFPRDPAAARVVWEQARDELLARAAAPVPMHEPFPAASGDDR HHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC RPRGRNFLALLLCLSLGTASLPHILTRYNTTTSVAAARRSVGWTLFFIALFYLTVPVLAV CCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH LIKYEILTNLVGRPFADLPAWITQWHRFEPGLIGVTDLLRDGIVHWSEIQMQPDIVVLAA HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHEECCCEEEEEC PEIAGLPYVVSGLIAAGALAAALSTADGLLLTIANALSHDVYYHMVAPDASSQRRVTISK CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHH VLLLGVALFASYVASLNTGKILFLVGAAFSLAASSFFPVLVLGVFWKRTTTRGAVAGMMT HHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH GLGVCVYYIVSTYPFFTQITGFAGPGWLGIEPISLGVFGVPAGFATAIVVSLLDRRPDAY HHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCHH TNALVDYIRHP HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1356967 [H]