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The map label for this gene is yabF [C]

Identifier: 126446116

GI number: 126446116

Start: 2100141

End: 2100917

Strand: Reverse

Name: yabF [C]

Synonym: BMA10247_A2166

Alternate gene names: 126446116

Gene position: 2100917-2100141 (Counterclockwise)

Preceding gene: 126447899

Following gene: 262192884

Centisome position: 89.3

GC content: 65.38

Gene sequence:

>777_bases
ATGAACGTCTTGCTGGTCTATGCCCATCCCGAGCCGAAATCGCTGAACGGCTCGCTGAAGAATTTCGCGCTCCGGCATCT
CGAGGAAGCCGGGCACGCGGTGCAGGTTTCCGATCTGTACGCGATGCAATGGAAAGCGGCGCTCGACGCCGACGACAATA
CCGCACGCCGGCCCGATACGCGCTTCGATCCGTCGCTCGATTCGAAGCATGCGTTCGAGAACGGCACGCAGGCGGCCGAC
ATCGCACGCGAGCAGGACAAGCTGCGCTGGGCCGACGCGCTCGTCCTGCAGTTTCCGCTGTGGTGGTTCTCGATGCCGGC
GATCCTGAAGGGCTGGGTCGAGCGCGTGTACGCGTTCGGCTTCGCGTACGGCGTCGGCGAGCATTCGGATACGCACTGGG
GCGATCGCTACGGCGAGGGCTCGATGAAAGGCAAGCGCGCGATGCTGATCGTGACGACGGGCGGGTGGGCATCGCATTAC
GGCCCGCGGGGCATCAACGGGCCGATCGACGACCTGCTGTACCCGATTCATCACGGCATCCTGTATTACCCCGGCTTCGA
CGTGCTGCCGCCGTTTCTCGTGCATCGGACGAACCGCATCGACGAGACGCGCTTCGCGACGATCCGCGATGCGCTCGGGC
AGCGCCTCGACACGCTGTGGACGACCGCGCCGATCGCCTTCCGTGCGCAGAATGCCGGCGATTACGAGATTCCACAGCTC
ACGCTGCGGGCCGACATCGCGCCGGGAAGGTCGGGGTTCGCCGCGCATATCGCGTGA

Upstream 100 bases:

>100_bases
TCCATTGCAATACCTGGAATATTGGAAATCAATTTCCAATATACCCGAGCAGCCGATAACCTGCGTTCACCTCTCCAGTC
AATCCATCGATTCTCCCGAT

Downstream 100 bases:

>100_bases
CGCGGGGCACGCGTCGGGCGGCCGGCGGCTGGGCGACGGCGCCGCGGCGGCGGCCGACGCCGCGCGGCTCGCGGTGGCGC
CGCTCGTGCGCGACGGCGGG

Product: quinone family NAD(P)H dehydrogenase

Products: NAD(P); reduced acceptor [C]

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MNVLLVYAHPEPKSLNGSLKNFALRHLEEAGHAVQVSDLYAMQWKAALDADDNTARRPDTRFDPSLDSKHAFENGTQAAD
IAREQDKLRWADALVLQFPLWWFSMPAILKGWVERVYAFGFAYGVGEHSDTHWGDRYGEGSMKGKRAMLIVTTGGWASHY
GPRGINGPIDDLLYPIHHGILYYPGFDVLPPFLVHRTNRIDETRFATIRDALGQRLDTLWTTAPIAFRAQNAGDYEIPQL
TLRADIAPGRSGFAAHIA

Sequences:

>Translated_258_residues
MNVLLVYAHPEPKSLNGSLKNFALRHLEEAGHAVQVSDLYAMQWKAALDADDNTARRPDTRFDPSLDSKHAFENGTQAAD
IAREQDKLRWADALVLQFPLWWFSMPAILKGWVERVYAFGFAYGVGEHSDTHWGDRYGEGSMKGKRAMLIVTTGGWASHY
GPRGINGPIDDLLYPIHHGILYYPGFDVLPPFLVHRTNRIDETRFATIRDALGQRLDTLWTTAPIAFRAQNAGDYEIPQL
TLRADIAPGRSGFAAHIA
>Mature_258_residues
MNVLLVYAHPEPKSLNGSLKNFALRHLEEAGHAVQVSDLYAMQWKAALDADDNTARRPDTRFDPSLDSKHAFENGTQAAD
IAREQDKLRWADALVLQFPLWWFSMPAILKGWVERVYAFGFAYGVGEHSDTHWGDRYGEGSMKGKRAMLIVTTGGWASHY
GPRGINGPIDDLLYPIHHGILYYPGFDVLPPFLVHRTNRIDETRFATIRDALGQRLDTLWTTAPIAFRAQNAGDYEIPQL
TLRADIAPGRSGFAAHIA

Specific function: Unknown

COG id: COG2249

COG function: function code R; Putative NADPH-quinone reductase (modulator of drug activity B)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NAD(P)H dehydrogenase (quinone) family [H]

Homologues:

Organism=Homo sapiens, GI156564357, Length=230, Percent_Identity=42.6086956521739, Blast_Score=170, Evalue=9e-43,
Organism=Homo sapiens, GI4505415, Length=225, Percent_Identity=37.3333333333333, Blast_Score=136, Evalue=1e-32,
Organism=Homo sapiens, GI70995396, Length=225, Percent_Identity=31.1111111111111, Blast_Score=91, Evalue=7e-19,
Organism=Escherichia coli, GI1786231, Length=216, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003680 [H]

Pfam domain/function: PF02525 Flavodoxin_2 [H]

EC number: 1.6.99.- [C]

Molecular weight: Translated: 28929; Mature: 28929

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVLLVYAHPEPKSLNGSLKNFALRHLEEAGHAVQVSDLYAMQWKAALDADDNTARRPDT
CCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCC
RFDPSLDSKHAFENGTQAADIAREQDKLRWADALVLQFPLWWFSMPAILKGWVERVYAFG
CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAYGVGEHSDTHWGDRYGEGSMKGKRAMLIVTTGGWASHYGPRGINGPIDDLLYPIHHGI
HHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHCCCCCCCCCHHHHHHHHHCCE
LYYPGFDVLPPFLVHRTNRIDETRFATIRDALGQRLDTLWTTAPIAFRAQNAGDYEIPQL
EEECCHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEE
TLRADIAPGRSGFAAHIA
EEEEECCCCCCCCEECCC
>Mature Secondary Structure
MNVLLVYAHPEPKSLNGSLKNFALRHLEEAGHAVQVSDLYAMQWKAALDADDNTARRPDT
CCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCC
RFDPSLDSKHAFENGTQAADIAREQDKLRWADALVLQFPLWWFSMPAILKGWVERVYAFG
CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAYGVGEHSDTHWGDRYGEGSMKGKRAMLIVTTGGWASHYGPRGINGPIDDLLYPIHHGI
HHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHCCCCCCCCCHHHHHHHHHCCE
LYYPGFDVLPPFLVHRTNRIDETRFATIRDALGQRLDTLWTTAPIAFRAQNAGDYEIPQL
EEECCHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEE
TLRADIAPGRSGFAAHIA
EEEEECCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NAD(P)H2; acceptor [C]

Specific reaction: NAD(P)H2 + acceptor = NAD(P) + reduced acceptor [C]

General reaction: Oxidoreductases; Acting on NADH or NADPH; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]