Click here to switch to the map view.

The map label for this gene is rfaQ [C]

Identifier: 126445622

GI number: 126445622

Start: 2207570

End: 2209438

Strand: Reverse

Name: rfaQ [C]

Synonym: BMA10247_A2276

Alternate gene names: 126445622

Gene position: 2209438-2207570 (Counterclockwise)

Preceding gene: 126447398

Following gene: 126447659

Centisome position: 93.91

GC content: 73.41

Gene sequence:

>1869_bases
ATGAGCCCCGCCGAGCGCGCGATGACGCTTCACGCGTGGCGGCGCGCGCGCCGCATTCTGTGCGTGAGGCTCGACAACAT
GGGTGACGTGCTGATGACGACGCCCGCGTTGCGCGCGCTGAAGGAAAGCGGCGAAGGGCGGCACTTGACGCTGCTCACGT
CGAGCGCGGCCGCGCCGCTCGCCGCGCATCTGCCGATGATCGACGACGTGTGGATCTACGATGCGCCGTGGGTCAAGCAT
CCGGGCGCGGACGACGGCGCGGCCGCGGACGTCGCGATGATCGAGCGGATCCTGTGCGGCGGCTTCGACGCCGCGGCGAT
CTTCACCGTCTACAGCCAGAGCCCGCTGCCCGCCGCGATGATGTGCCGGCTCGCGGGGATCGCGCTGCGGCTCGCGCATT
GCCGCGAGAATCCGTACCGGCTGCTGACCGAGCGCATCGCGGAAACGGAGCCGCAGGTGCAGTTGCGCCATGAAGTGGCG
CGGCAACTGGCGCTCGTGCGCGAGGTGGGCGCGACGACGCGCGACATGCGGCTCGCGTTCGAGCCGGGCGACGCCGCGCG
GCGCGCTGTGCGCGCGCGGCTGCGTGCGGCGCGGCTTGCGTGGCGCGCGCAGGCGGAGGGGGGCGCGGAAGGCGACGGGC
GGGATCGCGCGCAGGCGCGCGGGGCGGGGGCTTGCCTCGAGCCGGACGACGCGGCGGCTTCGGCTGCTTCGACGCGTTCG
GCTGCGGCCGAGGCGAATGGCTCCGACGATTCGTTTGCGGCCCACGGGGCAAATGCTTCAATCGCTGCGACTGCTTCGGT
TGTTCCGGCTGCCGCGGCTGCATCGGTCAAGTCGACTGCATCGACCGATTCGGCTGATTCGGCTGATTCGGCTGATGCGG
CTGATGCGGCTGATGCGGCTGATGCGGCTGATTCGATCGCTTCAGCCGCTGCGGTTGCCGCAAGCAATCCGAACGATTCA
ACCGATCCGCCCACCGACCTCGGCCGCTGGCTCGTCGTTCATCCGGGCGCGAGCGCGGCGTCGCGGCGCTGGCCCGCCGA
GCGCTTCGCGGACGTCGTCGCGCGCGTCGCCCGGTATTTCGACGGCGTAGCGGTGACGGGCGGCGCGCACGAGCGCGCGC
TCGTCGAGACTGTTTGCGCGCGCGCCGGCAAGCGCGTGCTGCCATTGGCCGGCGCGCTGTCGATCGGCGAGCTCGGCGCG
CTGATCGAAGCGGCCGACCTGCTGCTCGCGAACAACAGCGGCCCCGTGCATCTCGCGGCGGCGCTGGGCACGCCGGTGGT
CGATCTGTATGCGCTGACGAATCCGCAGCACACGCCGTGGCGCGTGCCGAGCCGCGTGCTGAACGCCGACGTGCCGTGCC
GTCACTGTTACCGCAGCGTCTGCGATCAGCCGGGCCATCCTTGCCTCGAGCGCGTGAGCGTGGACGACGTCGTCGCGGCC
GTGCGCGAACTGATGCGCGAAACCACGGGTTCGCACGGCGCGGGCGGCGGCGGCGCGGTGTCGCCGATTCGCGGCGGCGC
AGCGCGGCACGGTACGCACGCCGGCTCCGTGCGCGGCGCGGCCGCGCCCTGCGCCGTGCGGGGCGCCGCGCATGCGCGCG
ACGCATCGGAGCCCGCCGTGAGCGCGTCGGCGCTTGCCGTGCGCGCAGCCGGCGCGCATGCATCCGACGCGGGCTTGTCC
GCGGCCGGGGCATCCGCTCGCGGCGTATCCGCTGCCGGCGTGCCCGTCGAGGGCGGACCGCTTGCCGACCCGCCGCACGA
CGCACCGCCCACGCCGCCCATGCCGCCCCCACGCGCCGCCGTCCCTTCAACCGCTTCGCCGCGCGCGGCGAACGTCGTTC
CGATCACCTCCGCGACCGCAAGGACCTGA

Upstream 100 bases:

>100_bases
CGTCGCGGCTCGACGACGCCGCGTGGATCGTCGCGCGCGAATGCGCGGCGACGGCCGCGGCGCCGGCCGCGCCGGGCGAA
GCGCCGCAAGAGGGGCGGCG

Downstream 100 bases:

>100_bases
CGCATGGCCAAATCCCGTCCACCGCTCTACACGCTCGGCATCAACGCCGCGTTCCACGATACCGCCGCGTGCCTCGTGCG
CGACGGCGTCGTCGTCGCGG

Product: heptosyltransferase family protein

Products: NA

Alternate protein names: Lipopolysaccharide Heptosyltransferase II; Glycosyltransferase; Heptosyltransferase Family Protein; ADP-Heptose-LPS Heptosyltransferase II; Lipopolysaccharide Heptosyltransferase III; ADP-HeptoseLPS Heptosyltransferase; Glycosyl Transferase; HAD Superfamily Hydrolase; ADP-Heptose-LPS Heptosyltransferase; ADP-Heptose; Lipopolysaccharide Heptosyltransferase I; Family 9 Glycosyl Transferase; Heptosyltransferase Family; Transferase; ADP-Heptose-Lipopolysaccharide Heptosyltransferase II; ADP-HeptoseLPS Heptosyltransferase II; Lipopolysaccharide Core Biosynthesis Heptosyltransferase; Heptosyl Transferase Glycosyltransferase Family 9 Protein; Heptosyltransferase; Heptosyltransferase II Putatative; Glycosyl Transferase Gt9A; Lipopolysaccharide Heptosyltransferase; Hydrolase; Glycosyl Transferase ADP-HeptoseLPS Heptosyltransferase

Number of amino acids: Translated: 622; Mature: 621

Protein sequence:

>622_residues
MSPAERAMTLHAWRRARRILCVRLDNMGDVLMTTPALRALKESGEGRHLTLLTSSAAAPLAAHLPMIDDVWIYDAPWVKH
PGADDGAAADVAMIERILCGGFDAAAIFTVYSQSPLPAAMMCRLAGIALRLAHCRENPYRLLTERIAETEPQVQLRHEVA
RQLALVREVGATTRDMRLAFEPGDAARRAVRARLRAARLAWRAQAEGGAEGDGRDRAQARGAGACLEPDDAAASAASTRS
AAAEANGSDDSFAAHGANASIAATASVVPAAAAASVKSTASTDSADSADSADAADAADAADAADSIASAAAVAASNPNDS
TDPPTDLGRWLVVHPGASAASRRWPAERFADVVARVARYFDGVAVTGGAHERALVETVCARAGKRVLPLAGALSIGELGA
LIEAADLLLANNSGPVHLAAALGTPVVDLYALTNPQHTPWRVPSRVLNADVPCRHCYRSVCDQPGHPCLERVSVDDVVAA
VRELMRETTGSHGAGGGGAVSPIRGGAARHGTHAGSVRGAAAPCAVRGAAHARDASEPAVSASALAVRAAGAHASDAGLS
AAGASARGVSAAGVPVEGGPLADPPHDAPPTPPMPPPRAAVPSTASPRAANVVPITSATART

Sequences:

>Translated_622_residues
MSPAERAMTLHAWRRARRILCVRLDNMGDVLMTTPALRALKESGEGRHLTLLTSSAAAPLAAHLPMIDDVWIYDAPWVKH
PGADDGAAADVAMIERILCGGFDAAAIFTVYSQSPLPAAMMCRLAGIALRLAHCRENPYRLLTERIAETEPQVQLRHEVA
RQLALVREVGATTRDMRLAFEPGDAARRAVRARLRAARLAWRAQAEGGAEGDGRDRAQARGAGACLEPDDAAASAASTRS
AAAEANGSDDSFAAHGANASIAATASVVPAAAAASVKSTASTDSADSADSADAADAADAADAADSIASAAAVAASNPNDS
TDPPTDLGRWLVVHPGASAASRRWPAERFADVVARVARYFDGVAVTGGAHERALVETVCARAGKRVLPLAGALSIGELGA
LIEAADLLLANNSGPVHLAAALGTPVVDLYALTNPQHTPWRVPSRVLNADVPCRHCYRSVCDQPGHPCLERVSVDDVVAA
VRELMRETTGSHGAGGGGAVSPIRGGAARHGTHAGSVRGAAAPCAVRGAAHARDASEPAVSASALAVRAAGAHASDAGLS
AAGASARGVSAAGVPVEGGPLADPPHDAPPTPPMPPPRAAVPSTASPRAANVVPITSATART
>Mature_621_residues
SPAERAMTLHAWRRARRILCVRLDNMGDVLMTTPALRALKESGEGRHLTLLTSSAAAPLAAHLPMIDDVWIYDAPWVKHP
GADDGAAADVAMIERILCGGFDAAAIFTVYSQSPLPAAMMCRLAGIALRLAHCRENPYRLLTERIAETEPQVQLRHEVAR
QLALVREVGATTRDMRLAFEPGDAARRAVRARLRAARLAWRAQAEGGAEGDGRDRAQARGAGACLEPDDAAASAASTRSA
AAEANGSDDSFAAHGANASIAATASVVPAAAAASVKSTASTDSADSADSADAADAADAADAADSIASAAAVAASNPNDST
DPPTDLGRWLVVHPGASAASRRWPAERFADVVARVARYFDGVAVTGGAHERALVETVCARAGKRVLPLAGALSIGELGAL
IEAADLLLANNSGPVHLAAALGTPVVDLYALTNPQHTPWRVPSRVLNADVPCRHCYRSVCDQPGHPCLERVSVDDVVAAV
RELMRETTGSHGAGGGGAVSPIRGGAARHGTHAGSVRGAAAPCAVRGAAHARDASEPAVSASALAVRAAGAHASDAGLSA
AGASARGVSAAGVPVEGGPLADPPHDAPPTPPMPPPRAAVPSTASPRAANVVPITSATART

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 63337; Mature: 63206

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPAERAMTLHAWRRARRILCVRLDNMGDVLMTTPALRALKESGEGRHLTLLTSSAAAPL
CCHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
AAHLPMIDDVWIYDAPWVKHPGADDGAAADVAMIERILCGGFDAAAIFTVYSQSPLPAAM
HHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHEEEECCCCCCHHH
MCRLAGIALRLAHCRENPYRLLTERIAETEPQVQLRHEVARQLALVREVGATTRDMRLAF
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
EPGDAARRAVRARLRAARLAWRAQAEGGAEGDGRDRAQARGAGACLEPDDAAASAASTRS
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHH
AAAEANGSDDSFAAHGANASIAATASVVPAAAAASVKSTASTDSADSADSADAADAADAA
HHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
DAADSIASAAAVAASNPNDSTDPPTDLGRWLVVHPGASAASRRWPAERFADVVARVARYF
HHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEEEECCCCHHHHCCCHHHHHHHHHHHHHHH
DGVAVTGGAHERALVETVCARAGKRVLPLAGALSIGELGALIEAADLLLANNSGPVHLAA
CCEEEECCCHHHHHHHHHHHHCCCEEECHHCCCCHHHHHHHHHHHHHHEECCCCCEEEEE
ALGTPVVDLYALTNPQHTPWRVPSRVLNADVPCRHCYRSVCDQPGHPCLERVSVDDVVAA
HHCCCCEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCHHHHHCCHHHHHHH
VRELMRETTGSHGAGGGGAVSPIRGGAARHGTHAGSVRGAAAPCAVRGAAHARDASEPAV
HHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCHHCCCCCCCCH
SASALAVRAAGAHASDAGLSAAGASARGVSAAGVPVEGGPLADPPHDAPPTPPMPPPRAA
HHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VPSTASPRAANVVPITSATART
CCCCCCCCCCCEEEECCCCCCC
>Mature Secondary Structure 
SPAERAMTLHAWRRARRILCVRLDNMGDVLMTTPALRALKESGEGRHLTLLTSSAAAPL
CHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
AAHLPMIDDVWIYDAPWVKHPGADDGAAADVAMIERILCGGFDAAAIFTVYSQSPLPAAM
HHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHEEEECCCCCCHHH
MCRLAGIALRLAHCRENPYRLLTERIAETEPQVQLRHEVARQLALVREVGATTRDMRLAF
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
EPGDAARRAVRARLRAARLAWRAQAEGGAEGDGRDRAQARGAGACLEPDDAAASAASTRS
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHH
AAAEANGSDDSFAAHGANASIAATASVVPAAAAASVKSTASTDSADSADSADAADAADAA
HHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
DAADSIASAAAVAASNPNDSTDPPTDLGRWLVVHPGASAASRRWPAERFADVVARVARYF
HHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEEEECCCCHHHHCCCHHHHHHHHHHHHHHH
DGVAVTGGAHERALVETVCARAGKRVLPLAGALSIGELGALIEAADLLLANNSGPVHLAA
CCEEEECCCHHHHHHHHHHHHCCCEEECHHCCCCHHHHHHHHHHHHHHEECCCCCEEEEE
ALGTPVVDLYALTNPQHTPWRVPSRVLNADVPCRHCYRSVCDQPGHPCLERVSVDDVVAA
HHCCCCEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCHHHHHCCHHHHHHH
VRELMRETTGSHGAGGGGAVSPIRGGAARHGTHAGSVRGAAAPCAVRGAAHARDASEPAV
HHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCHHCCCCCCCCH
SASALAVRAAGAHASDAGLSAAGASARGVSAAGVPVEGGPLADPPHDAPPTPPMPPPRAA
HHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VPSTASPRAANVVPITSATART
CCCCCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA