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The map label for this gene is yhjC [H]

Identifier: 126445248

GI number: 126445248

Start: 461869

End: 462873

Strand: Reverse

Name: yhjC [H]

Synonym: BURPS668_A0511

Alternate gene names: 126445248

Gene position: 462873-461869 (Counterclockwise)

Preceding gene: 126443302

Following gene: 126444035

Centisome position: 14.8

GC content: 65.87

Gene sequence:

>1005_bases
ATGGACCGGCTGCAAGCCATGCAGGTGTTTACGCGCGTCGTCGATACGAACAGCTTTACCAAAGCGGCCGAGACGCTCGG
CCTGCCGCGCGCGTCGGTGACGACGATCATTCAGAATCTAGAGGCTTTCCTCGGCGTGCGGCTGATGCACCGGACGACGC
GCCGGCTGTCGCTCACGCCCGACGGCGCGGCGTATTACGAGCGCTGCGTGCGGATTCTCGCGGACGTGGAGGAAACCGAG
GCGAGCTTTCAGGTCAACAACCGCAAGCCGCACGGCAAGCTGCGGGTCGACATGCCGGGCTCGATCGGACGGCTGATCCT
GATCCCCTCGCTCTGCGAATTCCACTCACGCTACCCGGATATCGATCTGCAGCTCGGCCTGTCGGACCGGCCGGTCGATC
TGCTGCAGGAAGGCGTCGATTGCGTGATCCGCGTGGGCGCGCTGCAGGATTCGTCGCTCGTCGCGCGCCGCGTCGGCCTG
TTCGAGGGCACGACGGTCGCGTCTCCCGCGTATCTCGAGAAGTACGGCGAGCCGCAGACGATCGAGGAGCTCGCGCAACA
CAAGGCCGTCAACTACTTTTCGAGCCGCACCGGGCGCACGATCGACTGGGCGTTCCTGATCGACGGCAAGGAAGTCGAGG
TGAAGATGAACGGCCTCGTGTCGGTCAACGACGCGGACGCGTACGTGACCTGCGGCCTCGAAGGCTTCGGGCTGATCCAG
CCGCCGCTCTTCATGGTGCTGCCGCACCTGCGCAACGGCACGCTCAAGGAGGTGCTGCCGGGCCACAAGCCGCTGCCGAT
GCCGATTTCGGTCGTCTATCCGCACAGCCGGCATCTGTCGCCGAAGGTGCGCGTGTTCGTCGACTGGGTCGCCGAGATCT
TCGAGCGCTGCCCGCTGCTGAGCGGCCGCAAGGGGCTCGATGCGACGTGCAGCAAGCGCACGTTCGAGGAAGCGGAACGC
GCGCCGTCGCTCGACACGCCGGTGTTGAACGAGTGGGTGGCGTAA

Upstream 100 bases:

>100_bases
CAACACAATTCACGTCCCCTGAACAATCGTCGGCTGCGTCGCCTTCACCGGTGTCGCGGCCTGCATCCGTTCGGGGTGCC
AATATCGCGGAGGTAGAGTA

Downstream 100 bases:

>100_bases
GCGGTTAGTCGCGCAGACGGGCGCGCAGCGGCGCGCGCGTTCGTCGGTTCGTCGGTTCGTCGGTTCGTCGGTTCGTCATA
TGTTTGCGCAGCCGGCAAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MDRLQAMQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYYERCVRILADVEETE
ASFQVNNRKPHGKLRVDMPGSIGRLILIPSLCEFHSRYPDIDLQLGLSDRPVDLLQEGVDCVIRVGALQDSSLVARRVGL
FEGTTVASPAYLEKYGEPQTIEELAQHKAVNYFSSRTGRTIDWAFLIDGKEVEVKMNGLVSVNDADAYVTCGLEGFGLIQ
PPLFMVLPHLRNGTLKEVLPGHKPLPMPISVVYPHSRHLSPKVRVFVDWVAEIFERCPLLSGRKGLDATCSKRTFEEAER
APSLDTPVLNEWVA

Sequences:

>Translated_334_residues
MDRLQAMQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYYERCVRILADVEETE
ASFQVNNRKPHGKLRVDMPGSIGRLILIPSLCEFHSRYPDIDLQLGLSDRPVDLLQEGVDCVIRVGALQDSSLVARRVGL
FEGTTVASPAYLEKYGEPQTIEELAQHKAVNYFSSRTGRTIDWAFLIDGKEVEVKMNGLVSVNDADAYVTCGLEGFGLIQ
PPLFMVLPHLRNGTLKEVLPGHKPLPMPISVVYPHSRHLSPKVRVFVDWVAEIFERCPLLSGRKGLDATCSKRTFEEAER
APSLDTPVLNEWVA
>Mature_334_residues
MDRLQAMQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYYERCVRILADVEETE
ASFQVNNRKPHGKLRVDMPGSIGRLILIPSLCEFHSRYPDIDLQLGLSDRPVDLLQEGVDCVIRVGALQDSSLVARRVGL
FEGTTVASPAYLEKYGEPQTIEELAQHKAVNYFSSRTGRTIDWAFLIDGKEVEVKMNGLVSVNDADAYVTCGLEGFGLIQ
PPLFMVLPHLRNGTLKEVLPGHKPLPMPISVVYPHSRHLSPKVRVFVDWVAEIFERCPLLSGRKGLDATCSKRTFEEAER
APSLDTPVLNEWVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=305, Percent_Identity=39.672131147541, Blast_Score=237, Evalue=7e-64,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=33.445945945946, Blast_Score=164, Evalue=7e-42,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=31.7567567567568, Blast_Score=151, Evalue=7e-38,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=28.2685512367491, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=30.5263157894737, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1787128, Length=282, Percent_Identity=28.3687943262411, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI87081978, Length=299, Percent_Identity=30.4347826086957, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789173, Length=197, Percent_Identity=33.502538071066, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=24.8299319727891, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788706, Length=301, Percent_Identity=23.5880398671096, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788748, Length=136, Percent_Identity=33.8235294117647, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1786448, Length=298, Percent_Identity=22.1476510067114, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790011, Length=263, Percent_Identity=24.3346007604563, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37241; Mature: 37241

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLQAMQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
DGAAYYERCVRILADVEETEASFQVNNRKPHGKLRVDMPGSIGRLILIPSLCEFHSRYPD
CCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCCCEEEHHHHHHHHHCCCC
IDLQLGLSDRPVDLLQEGVDCVIRVGALQDSSLVARRVGLFEGTTVASPAYLEKYGEPQT
CEEEECCCCCCHHHHHCCHHEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHCCCCHH
IEELAQHKAVNYFSSRTGRTIDWAFLIDGKEVEVKMNGLVSVNDADAYVTCGLEGFGLIQ
HHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEECCEEEECCCCEEEEECCCCCCCCC
PPLFMVLPHLRNGTLKEVLPGHKPLPMPISVVYPHSRHLSPKVRVFVDWVAEIFERCPLL
CHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC
SGRKGLDATCSKRTFEEAERAPSLDTPVLNEWVA
CCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCC
>Mature Secondary Structure
MDRLQAMQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
DGAAYYERCVRILADVEETEASFQVNNRKPHGKLRVDMPGSIGRLILIPSLCEFHSRYPD
CCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCCCEEEHHHHHHHHHCCCC
IDLQLGLSDRPVDLLQEGVDCVIRVGALQDSSLVARRVGLFEGTTVASPAYLEKYGEPQT
CEEEECCCCCCHHHHHCCHHEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHCCCCHH
IEELAQHKAVNYFSSRTGRTIDWAFLIDGKEVEVKMNGLVSVNDADAYVTCGLEGFGLIQ
HHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEECCEEEECCCCEEEEECCCCCCCCC
PPLFMVLPHLRNGTLKEVLPGHKPLPMPISVVYPHSRHLSPKVRVFVDWVAEIFERCPLL
CHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC
SGRKGLDATCSKRTFEEAERAPSLDTPVLNEWVA
CCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]