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The map label for this gene is yocS [H]

Identifier: 126207874

GI number: 126207874

Start: 443494

End: 444432

Strand: Direct

Name: yocS [H]

Synonym: APL_0390

Alternate gene names: 126207874

Gene position: 443494-444432 (Clockwise)

Preceding gene: 126207869

Following gene: 126207877

Centisome position: 19.5

GC content: 41.85

Gene sequence:

>939_bases
ATGAATTTTTTATTAAAACTGACGTTATTTGTGAGTAAAACTTTTGCTATTTGGGTGGTGGTATTTGCCTTTATTTCGGC
GCAATATCCGGAGACTTTTAAGCAATTCGTACCTTGGATTCCATACTTGCTCGGTATCGTCATGCTGGGAATGGGGCTTA
CTTTAACCTTTAAAGATTTTGGCGAAGTCACTAAAAATCCGAAAGCGGCGATTATCGGGGTGATTGCGCAATTTGTCGTG
ATGCCGAGTATTGCTTTTTTATTGGCTAAAGCATTTCAGCTACCGCCGGATTTAGCAATCGGGGTAATTTTAGTCGGTTC
TTGTCCGGGCGGGACGTCATCGAACGTGATGACTTATTTGGCAAGAGGAAATACGGCGTTATCCGTCGCTTGCACTACCG
TTTCAACTTTATTGGCTCCGGTATTAACGCCGGCGATTTTCTATTTATTTGCAAGCGAATGGTTGGAAATTGATGCGGGC
GCAATGTTCGTTTCCGTCTTAAAAATGGTATTGTTACCGATTTTTGTCGGGGTAGTGATTCGTTCTATTTTTAAACAAAA
AATCGAACAATTCAGCCAAACGATGCCGTTAATTTCGGTTGTGGCGATTATCTTAATCGTAACGGCGGTGGTTTCGGTCA
GTAAAGATCGTATTATCGAATCCGGTTTATTGATTTTCTTCGTAGTGGTATTACATAACGGTTTAGGTTATTTAATCGGT
TATACGGTAGGTCGAGTATTAAAATTACCGATTGCCGACAGTAAAGCGATTTCGATTGAAGTCGGTATGCAAAATTCCGG
TTTAGGCGCAGCGTTAGCCGCATTGCATTTTAAAGCGAATCCGGTGGTGGCGGTGCCAAGTGCGGTATTTAGCTTTTGGC
ACAATATTTCCGGTCCGGTATTGGCGATGATTTTCGCCTCGATTAAAAACGAAAAATAA

Upstream 100 bases:

>100_bases
GAATGCGAATGCTTGTCTATTCACATTTCTAAAAAATTCAGGTAGCCTGTGTTTCCTTTAATTTAAATCAATATATGTTA
ATAATAAATAAGGACACAAC

Downstream 100 bases:

>100_bases
TTTCTCGGACGGTTTAATGTAAACAAGCGGTGGAAATTTACTAAAATATTGTAAATTTCCACCGCTTGCTTTTAGTCAAT
TAGAATCCGCCCGGTCTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MNFLLKLTLFVSKTFAIWVVVFAFISAQYPETFKQFVPWIPYLLGIVMLGMGLTLTFKDFGEVTKNPKAAIIGVIAQFVV
MPSIAFLLAKAFQLPPDLAIGVILVGSCPGGTSSNVMTYLARGNTALSVACTTVSTLLAPVLTPAIFYLFASEWLEIDAG
AMFVSVLKMVLLPIFVGVVIRSIFKQKIEQFSQTMPLISVVAIILIVTAVVSVSKDRIIESGLLIFFVVVLHNGLGYLIG
YTVGRVLKLPIADSKAISIEVGMQNSGLGAALAALHFKANPVVAVPSAVFSFWHNISGPVLAMIFASIKNEK

Sequences:

>Translated_312_residues
MNFLLKLTLFVSKTFAIWVVVFAFISAQYPETFKQFVPWIPYLLGIVMLGMGLTLTFKDFGEVTKNPKAAIIGVIAQFVV
MPSIAFLLAKAFQLPPDLAIGVILVGSCPGGTSSNVMTYLARGNTALSVACTTVSTLLAPVLTPAIFYLFASEWLEIDAG
AMFVSVLKMVLLPIFVGVVIRSIFKQKIEQFSQTMPLISVVAIILIVTAVVSVSKDRIIESGLLIFFVVVLHNGLGYLIG
YTVGRVLKLPIADSKAISIEVGMQNSGLGAALAALHFKANPVVAVPSAVFSFWHNISGPVLAMIFASIKNEK
>Mature_312_residues
MNFLLKLTLFVSKTFAIWVVVFAFISAQYPETFKQFVPWIPYLLGIVMLGMGLTLTFKDFGEVTKNPKAAIIGVIAQFVV
MPSIAFLLAKAFQLPPDLAIGVILVGSCPGGTSSNVMTYLARGNTALSVACTTVSTLLAPVLTPAIFYLFASEWLEIDAG
AMFVSVLKMVLLPIFVGVVIRSIFKQKIEQFSQTMPLISVVAIILIVTAVVSVSKDRIIESGLLIFFVVVLHNGLGYLIG
YTVGRVLKLPIADSKAISIEVGMQNSGLGAALAALHFKANPVVAVPSAVFSFWHNISGPVLAMIFASIKNEK

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=264, Percent_Identity=30.6818181818182, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI215422368, Length=225, Percent_Identity=34.6666666666667, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI215422370, Length=228, Percent_Identity=34.2105263157895, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI9790143, Length=228, Percent_Identity=34.2105263157895, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI4506971, Length=270, Percent_Identity=27.7777777777778, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI58219066, Length=246, Percent_Identity=29.6747967479675, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI37537552, Length=112, Percent_Identity=35.7142857142857, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI24308414, Length=242, Percent_Identity=30.1652892561983, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115533076, Length=142, Percent_Identity=33.0985915492958, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 33564; Mature: 33564

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFLLKLTLFVSKTFAIWVVVFAFISAQYPETFKQFVPWIPYLLGIVMLGMGLTLTFKDF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHH
GEVTKNPKAAIIGVIAQFVVMPSIAFLLAKAFQLPPDLAIGVILVGSCPGGTSSNVMTYL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHH
ARGNTALSVACTTVSTLLAPVLTPAIFYLFASEWLEIDAGAMFVSVLKMVLLPIFVGVVI
HCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
RSIFKQKIEQFSQTMPLISVVAIILIVTAVVSVSKDRIIESGLLIFFVVVLHNGLGYLIG
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
YTVGRVLKLPIADSKAISIEVGMQNSGLGAALAALHFKANPVVAVPSAVFSFWHNISGPV
HHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCHH
LAMIFASIKNEK
HHHHHHHHCCCC
>Mature Secondary Structure
MNFLLKLTLFVSKTFAIWVVVFAFISAQYPETFKQFVPWIPYLLGIVMLGMGLTLTFKDF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHH
GEVTKNPKAAIIGVIAQFVVMPSIAFLLAKAFQLPPDLAIGVILVGSCPGGTSSNVMTYL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHH
ARGNTALSVACTTVSTLLAPVLTPAIFYLFASEWLEIDAGAMFVSVLKMVLLPIFVGVVI
HCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
RSIFKQKIEQFSQTMPLISVVAIILIVTAVVSVSKDRIIESGLLIFFVVVLHNGLGYLIG
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
YTVGRVLKLPIADSKAISIEVGMQNSGLGAALAALHFKANPVVAVPSAVFSFWHNISGPV
HHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCHH
LAMIFASIKNEK
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]