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The map label for this gene is rnfE [H]

Identifier: 126207659

GI number: 126207659

Start: 189276

End: 189962

Strand: Direct

Name: rnfE [H]

Synonym: APL_0171

Alternate gene names: 126207659

Gene position: 189276-189962 (Clockwise)

Preceding gene: 126207658

Following gene: 126207660

Centisome position: 8.32

GC content: 44.54

Gene sequence:

>687_bases
ATGAATACTGAGAATCAAATTCCGGTGACGGAAATCGATACCACAACGCCGGCGGAACCGTCAATTTGGCGTAATTTGCT
TGCTGAAGGCGTGTGGAAAAATAACGGTGCTTTAGTGCAGCTGTTAGGGCTTTGTCCGTTATTGGCGGTATCAAATAATG
TGACTAATGCGCTCGGACTCGGTTTGGCGACCTTATTAGTGCTGGTTTGTACGAATACTATGGTGTCGTTATTCCGTAAA
TTTACTCCGACCGATATTCGTATTCCGATTTATGTGATGGTGATTGCCACCGTGGTAACGGCGGTTCAATTATTAATGAA
TGCCTTTGCTTATCCGGTTTATCAATCGCTTGGTATTTTTATTCCGCTGATTGTAACTAACTGTATCGTCATCGGACGGG
CGGAAGCTTTTGCGTCTAAAAACTCGGTAGCGCATTCCGCTTTTGACGGCTTTGCCATGGGGCTTGGCATGACGTTAAGC
CTTGTGGCGTTAGGCGCAATGCGTGAACTGATTGGTAACGGTACGTTATTTGACGGCTTGGATTTATTACTGGGCGATTG
GGCGAAATCTTTACGAATTGATGTGTTACACTTAGACTCGGGTTTATTACTGGCAATTTTACCTCCCGGTGCATTTATTG
GGCTTGGGGTCATTTTGGCTGTGAAGAATTTGATTGATAAGAAATAG

Upstream 100 bases:

>100_bases
TGAATAATGTGCGCCAAAGTGCAAAATGGGTCGTCACGGAATTAGCAAAATCTCCCGAACAATTAGAAACTTTTGCAAGC
TGTAAATGAGAAAGAATTGT

Downstream 100 bases:

>100_bases
AGAACCGAATGACAGAGCGAATTACAGCCCGAGAAGGGTATGAACATAAATTTTTAAAGGAATTTTTGTATCCGAAATAT
TGGGGCGTATGGCTTGGCGT

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MNTENQIPVTEIDTTTPAEPSIWRNLLAEGVWKNNGALVQLLGLCPLLAVSNNVTNALGLGLATLLVLVCTNTMVSLFRK
FTPTDIRIPIYVMVIATVVTAVQLLMNAFAYPVYQSLGIFIPLIVTNCIVIGRAEAFASKNSVAHSAFDGFAMGLGMTLS
LVALGAMRELIGNGTLFDGLDLLLGDWAKSLRIDVLHLDSGLLLAILPPGAFIGLGVILAVKNLIDKK

Sequences:

>Translated_228_residues
MNTENQIPVTEIDTTTPAEPSIWRNLLAEGVWKNNGALVQLLGLCPLLAVSNNVTNALGLGLATLLVLVCTNTMVSLFRK
FTPTDIRIPIYVMVIATVVTAVQLLMNAFAYPVYQSLGIFIPLIVTNCIVIGRAEAFASKNSVAHSAFDGFAMGLGMTLS
LVALGAMRELIGNGTLFDGLDLLLGDWAKSLRIDVLHLDSGLLLAILPPGAFIGLGVILAVKNLIDKK
>Mature_228_residues
MNTENQIPVTEIDTTTPAEPSIWRNLLAEGVWKNNGALVQLLGLCPLLAVSNNVTNALGLGLATLLVLVCTNTMVSLFRK
FTPTDIRIPIYVMVIATVVTAVQLLMNAFAYPVYQSLGIFIPLIVTNCIVIGRAEAFASKNSVAHSAFDGFAMGLGMTLS
LVALGAMRELIGNGTLFDGLDLLLGDWAKSLRIDVLHLDSGLLLAILPPGAFIGLGVILAVKNLIDKK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=205, Percent_Identity=65.8536585365854, Blast_Score=262, Evalue=2e-71,
Organism=Escherichia coli, GI1787914, Length=146, Percent_Identity=36.3013698630137, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 24287; Mature: 24287

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTENQIPVTEIDTTTPAEPSIWRNLLAEGVWKNNGALVQLLGLCPLLAVSNNVTNALGL
CCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
GLATLLVLVCTNTMVSLFRKFTPTDIRIPIYVMVIATVVTAVQLLMNAFAYPVYQSLGIF
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPLIVTNCIVIGRAEAFASKNSVAHSAFDGFAMGLGMTLSLVALGAMRELIGNGTLFDGL
HHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
DLLLGDWAKSLRIDVLHLDSGLLLAILPPGAFIGLGVILAVKNLIDKK
HHHHHHHHHHHEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTENQIPVTEIDTTTPAEPSIWRNLLAEGVWKNNGALVQLLGLCPLLAVSNNVTNALGL
CCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
GLATLLVLVCTNTMVSLFRKFTPTDIRIPIYVMVIATVVTAVQLLMNAFAYPVYQSLGIF
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPLIVTNCIVIGRAEAFASKNSVAHSAFDGFAMGLGMTLSLVALGAMRELIGNGTLFDGL
HHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
DLLLGDWAKSLRIDVLHLDSGLLLAILPPGAFIGLGVILAVKNLIDKK
HHHHHHHHHHHEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA