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The map label for this gene is rnfB [H]

Identifier: 126207654

GI number: 126207654

Start: 184034

End: 184624

Strand: Direct

Name: rnfB [H]

Synonym: APL_0166

Alternate gene names: 126207654

Gene position: 184034-184624 (Clockwise)

Preceding gene: 126207653

Following gene: 126207655

Centisome position: 8.09

GC content: 46.53

Gene sequence:

>591_bases
GTGTATATCCTGATTGCGATTGCCGTGATCGCACTGATTTTCGGTGCGATTTTGGGCTATTCGTCGATCAAATTAAAAGT
TGAAGCCGATCCTATCGTCGAGCAAATTGATGCGTTGTTACCGCAAAGCCAATGCGGGCAATGCGGTTATCCGGGATGCA
AACCCTATGCGGAAGCGATAGCAAACGGTGATCAAATTACCAAATGTGTGCCGGGCGGTCAGCCGCTGGTGGTAAAAATT
GCGGATCTATTGGGTGTCGAAGTACCGGCGATGGACGGCGTTGCCGAGCCGGAAGTAAAGGTGGCGTTAATCCACGAAGA
TATGTGTATCGGCTGTACCAAATGTATTCAAGCCTGTCCGGTTGATGCGATTATCGGTACCAATAAAGCGATGCACACGG
TCATTCCCGATTTATGTACCGGTTGCGAATTATGTGTCGCGCCTTGCCCGACAAATTGTATTGAAATGGTAAAACAACAA
ACGACAACCAAAACGTGGAATTGGCAATTTGACGAGAATTTAGTCATTCCGGTGGTAAATACGACAGAGTTACAGAAAAA
ATTGGTGATTGGCGGAGGTAAAAATGAGTAA

Upstream 100 bases:

>100_bases
AAGGCGCTTCCATCGCTTTAATTACGGCGGGACTCATGTCGCTTGCCTTTATGGGCTTCACCGGTTTGGTAAAAATCTAA
TGTTAGCATTTCCTATTATT

Downstream 100 bases:

>100_bases
TGCGATAGCAGTATTGGATCGTATTCGCCAAGGCAACCGATCCGGAGAATTATGGCAATTCCCGGGCGGGATTCACCCGA
TGCAAAATAAAAAGCAATCG

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MYILIAIAVIALIFGAILGYSSIKLKVEADPIVEQIDALLPQSQCGQCGYPGCKPYAEAIANGDQITKCVPGGQPLVVKI
ADLLGVEVPAMDGVAEPEVKVALIHEDMCIGCTKCIQACPVDAIIGTNKAMHTVIPDLCTGCELCVAPCPTNCIEMVKQQ
TTTKTWNWQFDENLVIPVVNTTELQKKLVIGGGKNE

Sequences:

>Translated_196_residues
MYILIAIAVIALIFGAILGYSSIKLKVEADPIVEQIDALLPQSQCGQCGYPGCKPYAEAIANGDQITKCVPGGQPLVVKI
ADLLGVEVPAMDGVAEPEVKVALIHEDMCIGCTKCIQACPVDAIIGTNKAMHTVIPDLCTGCELCVAPCPTNCIEMVKQQ
TTTKTWNWQFDENLVIPVVNTTELQKKLVIGGGKNE
>Mature_196_residues
MYILIAIAVIALIFGAILGYSSIKLKVEADPIVEQIDALLPQSQCGQCGYPGCKPYAEAIANGDQITKCVPGGQPLVVKI
ADLLGVEVPAMDGVAEPEVKVALIHEDMCIGCTKCIQACPVDAIIGTNKAMHTVIPDLCTGCELCVAPCPTNCIEMVKQQ
TTTKTWNWQFDENLVIPVVNTTELQKKLVIGGGKNE

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cytoplasm. Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=170, Percent_Identity=58.8235294117647, Blast_Score=212, Evalue=1e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 20884; Mature: 20884

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
9.2 %Cys+Met (Translated Protein)
6.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
9.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYILIAIAVIALIFGAILGYSSIKLKVEADPIVEQIDALLPQSQCGQCGYPGCKPYAEAI
CCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
ANGDQITKCVPGGQPLVVKIADLLGVEVPAMDGVAEPEVKVALIHEDMCIGCTKCIQACP
CCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCC
VDAIIGTNKAMHTVIPDLCTGCELCVAPCPTNCIEMVKQQTTTKTWNWQFDENLVIPVVN
CHHHHCCCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCCEEECCCEEEEEEC
TTELQKKLVIGGGKNE
HHHHHHEEEECCCCCC
>Mature Secondary Structure
MYILIAIAVIALIFGAILGYSSIKLKVEADPIVEQIDALLPQSQCGQCGYPGCKPYAEAI
CCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
ANGDQITKCVPGGQPLVVKIADLLGVEVPAMDGVAEPEVKVALIHEDMCIGCTKCIQACP
CCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCC
VDAIIGTNKAMHTVIPDLCTGCELCVAPCPTNCIEMVKQQTTTKTWNWQFDENLVIPVVN
CHHHHCCCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCCEEECCCEEEEEEC
TTELQKKLVIGGGKNE
HHHHHHEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA