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The map label for this gene is nqrD [H]

Identifier: 126207641

GI number: 126207641

Start: 171448

End: 172071

Strand: Direct

Name: nqrD [H]

Synonym: APL_0153

Alternate gene names: 126207641

Gene position: 171448-172071 (Clockwise)

Preceding gene: 126207640

Following gene: 126207642

Centisome position: 7.54

GC content: 41.83

Gene sequence:

>624_bases
ATGGCGAGTAACAATCTTAAAAAGTTATTGTTATCTCCAATCGCGGATAACAACCCGATTGCATTGCAGATCTTGGGGAT
CTGTTCTGCATTAGCGGTAACTACTCAGTTACAAACAGCGGTAGTAATGGCGATTGCGGTAAGTTTAGTTACTGCTTTCT
CCAGTATGTTTATTTCAATGATTCGGAACTATATTCCGAATAGTATCCGTATCATTGTACAAATGGCTATCATTGCATCA
CTTGTAATCTTAGTTGACCAAATTTTACGTGCGTATGCGTATGAACTGTCAAAACAGCTTTCTGTTTTCGTAGGCCTTAT
CATTACTAACTGTATCGTAATGGGGCGCGCGGAAGCGTTTGCAATGAAATCCGGTCCGGTAGAAAGTTTCGTTGACGGTA
TCGGTAACGGTTTAGGTTACGGTGCGATGTTAATTATCGTAGCGTTTTTACGTGAACTAATCGGTTCGGGTAAACTCTTC
GGCGTAACTATCCTACAAACCGTTCAAGACGGCGGTTGGTATCAAGCAAACGGCTTATTCTTATTGGCACCAAGTGCGTT
CTTCATTATCGGTTTTGTGATTTGGGGAATCCGTACATGGAAACCGGAGCAAGTGGAGAAATAA

Upstream 100 bases:

>100_bases
TAACGTCAAACGGTGTGGACGGCTCATTTAAATATTGGTTCGGTGCTAACGGCTTCGGTCCGTATTTAGCGAAATTTAAA
GCAGCAATGGGAGCTAACTA

Downstream 100 bases:

>100_bases
GATGGAACATTATTTAAGTCTATTTGTTAAGTCCGTATTCATTGAGAATATGGCACTTTCTTTCTTCCTTGGTATGTGTA
CATTCCTTGCGGTGTCTAAG

Product: Na(+)-translocating NADH-quinone reductase subunit D

Products: NA

Alternate protein names: Na(+)-NQR subunit D; Na(+)-translocating NQR subunit D; NQR complex subunit D; NQR-1 subunit D [H]

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MASNNLKKLLLSPIADNNPIALQILGICSALAVTTQLQTAVVMAIAVSLVTAFSSMFISMIRNYIPNSIRIIVQMAIIAS
LVILVDQILRAYAYELSKQLSVFVGLIITNCIVMGRAEAFAMKSGPVESFVDGIGNGLGYGAMLIIVAFLRELIGSGKLF
GVTILQTVQDGGWYQANGLFLLAPSAFFIIGFVIWGIRTWKPEQVEK

Sequences:

>Translated_207_residues
MASNNLKKLLLSPIADNNPIALQILGICSALAVTTQLQTAVVMAIAVSLVTAFSSMFISMIRNYIPNSIRIIVQMAIIAS
LVILVDQILRAYAYELSKQLSVFVGLIITNCIVMGRAEAFAMKSGPVESFVDGIGNGLGYGAMLIIVAFLRELIGSGKLF
GVTILQTVQDGGWYQANGLFLLAPSAFFIIGFVIWGIRTWKPEQVEK
>Mature_206_residues
ASNNLKKLLLSPIADNNPIALQILGICSALAVTTQLQTAVVMAIAVSLVTAFSSMFISMIRNYIPNSIRIIVQMAIIASL
VILVDQILRAYAYELSKQLSVFVGLIITNCIVMGRAEAFAMKSGPVESFVDGIGNGLGYGAMLIIVAFLRELIGSGKLFG
VTILQTVQDGGWYQANGLFLLAPSAFFIIGFVIWGIRTWKPEQVEK

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1347

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=205, Percent_Identity=37.5609756097561, Blast_Score=116, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011292 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 22361; Mature: 22230

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASNNLKKLLLSPIADNNPIALQILGICSALAVTTQLQTAVVMAIAVSLVTAFSSMFISM
CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRNYIPNSIRIIVQMAIIASLVILVDQILRAYAYELSKQLSVFVGLIITNCIVMGRAEAF
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AMKSGPVESFVDGIGNGLGYGAMLIIVAFLRELIGSGKLFGVTILQTVQDGGWYQANGLF
HHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCEE
LLAPSAFFIIGFVIWGIRTWKPEQVEK
EECCHHHHHHHHHHHHHCCCCHHHCCC
>Mature Secondary Structure 
ASNNLKKLLLSPIADNNPIALQILGICSALAVTTQLQTAVVMAIAVSLVTAFSSMFISM
CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRNYIPNSIRIIVQMAIIASLVILVDQILRAYAYELSKQLSVFVGLIITNCIVMGRAEAF
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AMKSGPVESFVDGIGNGLGYGAMLIIVAFLRELIGSGKLFGVTILQTVQDGGWYQANGLF
HHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCEE
LLAPSAFFIIGFVIWGIRTWKPEQVEK
EECCHHHHHHHHHHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA