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The map label for this gene is ycfF [C]

Identifier: 126207614

GI number: 126207614

Start: 142362

End: 142727

Strand: Reverse

Name: ycfF [C]

Synonym: APL_0126

Alternate gene names: 126207614

Gene position: 142727-142362 (Counterclockwise)

Preceding gene: 126207615

Following gene: 126207613

Centisome position: 6.28

GC content: 40.71

Gene sequence:

>366_bases
ATGTCAAACACCACATTTGAAGAAACAATTTTCAGTAAAATTATTCGCAAAGAAATCCCGGCGGCAATTGTTTATCAAGA
TGAACTCGTGACTGCATTCCGTGATATTTCCCCACAAGCACCGACTCACATTCTTATCGTGCCGAATAAATTAATCCCGA
CCGTAAACCACGTTGAAGCAGAAGACGAATTAGCATTAGGTCGTTTATTTACTGTGGCGGCAAAAATTGCTAAAGAAGAA
GGCATTGCTGAAGACGGTTATCGTTTAATTGTGAACTGTAACGTACACGGCGGTCAGGAAGTATTCCATATCCATATGCA
TTTAGTCGGCGGCGAGCCTTTAGGCAAAATGTTAAACAACAAATAG

Upstream 100 bases:

>100_bases
GCAAGCACTTTCAAAAGCGCAAGCGGTAAAATTTTTTGCAAAATTTGCCAAAAAATTAGAGAATTATTATTTCTAAACAA
CACTCTCATAAGGAATACCT

Downstream 100 bases:

>100_bases
TATGAAACAGTTAAAATCTTATTGGTCATTGGCAGTTTTTTCGCTTTTTTTAACCGCTTGCGGCAGTAATCCGCAAAGTT
ATATCAAAGGGAAATCCGCT

Product: HIT-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MSNTTFEETIFSKIIRKEIPAAIVYQDELVTAFRDISPQAPTHILIVPNKLIPTVNHVEAEDELALGRLFTVAAKIAKEE
GIAEDGYRLIVNCNVHGGQEVFHIHMHLVGGEPLGKMLNNK

Sequences:

>Translated_121_residues
MSNTTFEETIFSKIIRKEIPAAIVYQDELVTAFRDISPQAPTHILIVPNKLIPTVNHVEAEDELALGRLFTVAAKIAKEE
GIAEDGYRLIVNCNVHGGQEVFHIHMHLVGGEPLGKMLNNK
>Mature_120_residues
SNTTFEETIFSKIIRKEIPAAIVYQDELVTAFRDISPQAPTHILIVPNKLIPTVNHVEAEDELALGRLFTVAAKIAKEEG
IAEDGYRLIVNCNVHGGQEVFHIHMHLVGGEPLGKMLNNK

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI14211923, Length=106, Percent_Identity=48.1132075471698, Blast_Score=114, Evalue=2e-26,
Organism=Homo sapiens, GI4885413, Length=107, Percent_Identity=49.5327102803738, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1787346, Length=115, Percent_Identity=80, Blast_Score=172, Evalue=8e-45,
Organism=Caenorhabditis elegans, GI17506713, Length=107, Percent_Identity=45.7943925233645, Blast_Score=110, Evalue=2e-25,
Organism=Drosophila melanogaster, GI28574010, Length=108, Percent_Identity=47.2222222222222, Blast_Score=114, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24581222, Length=108, Percent_Identity=47.2222222222222, Blast_Score=113, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 13428; Mature: 13297

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTTFEETIFSKIIRKEIPAAIVYQDELVTAFRDISPQAPTHILIVPNKLIPTVNHVEA
CCCCHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCC
EDELALGRLFTVAAKIAKEEGIAEDGYRLIVNCNVHGGQEVFHIHMHLVGGEPLGKMLNN
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCHHHHHHCC
K
C
>Mature Secondary Structure 
SNTTFEETIFSKIIRKEIPAAIVYQDELVTAFRDISPQAPTHILIVPNKLIPTVNHVEA
CCCHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCC
EDELALGRLFTVAAKIAKEEGIAEDGYRLIVNCNVHGGQEVFHIHMHLVGGEPLGKMLNN
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCHHHHHHCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]