Click here to switch to the map view.

The map label for this gene is ycbL [C]

Identifier: 126207611

GI number: 126207611

Start: 140608

End: 141237

Strand: Direct

Name: ycbL [C]

Synonym: APL_0123

Alternate gene names: 126207611

Gene position: 140608-141237 (Clockwise)

Preceding gene: 126207610

Following gene: 126207619

Centisome position: 6.18

GC content: 39.68

Gene sequence:

>630_bases
ATGTTTAATTTACAAATTATCCCGGTCAGTGCGTTTCAGCAAAATTGTAGCGTTATTTGGGATGATAATAAGAATGCCGC
AATTATTGATGCGGGTGACGATGCGGATAAAATCATTCAGTTTGTCGAATCACAAAATTTAAAAGTACAAAAGCTATTAC
TTACCCACGGTCACTTAGATCATATTATGGCGGTTGAAAAAGTCAGAGATCACTTCGGTGTGGAAGTATATGGCTCTCAT
ATTGATGATAAACCGTTATTTGAACAATTGCCGCAAATGTGCGAAATGTTCGGTATTCCGCCGGTTAAAGCGTTTTTACC
GGATCATTGGTTAAGTGAAGATGATAGGGTGGAAGTCGGTGCATTACGATTCTCCGTCCGTCATTTACCGGGACACGCAC
CAGGGCATATTGGTTTCTTTGATTTTGAAAACAAAATCGCTTTTAGCGGCGATGTGTTATTTAAAGACAGTATTGGACGA
ACCGATCTTTATCTCGGAAATTTAGATGTGTTACTCAACACGATCCGCACTAAGATGTTCGATTTGGACGATGATTTTAT
TGTAGTTGCGGGTCATGGTCCTCATACTACAATTGGGCGTGAGAAACAGCATAATCCGTTCTTAAAATAG

Upstream 100 bases:

>100_bases
TGCATAATGGCGGTGTCGGTTATTATCCTCGCAGTAATTTCGTTCATGTAGATACCGGCCCTGTTCGTACGTGGCGCGGT
TAGGTAAGCGGTCTAATTTT

Downstream 100 bases:

>100_bases
TTTTATGGCTCGAGAATCGTAAACCATAATTGATTTAACTGATAAATGGCAGAATGATATTCTGCCATTTTTCGTTTAAA
TTTCCCTTCATTGAATTGTG

Product: glyoxalase II family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MFNLQIIPVSAFQQNCSVIWDDNKNAAIIDAGDDADKIIQFVESQNLKVQKLLLTHGHLDHIMAVEKVRDHFGVEVYGSH
IDDKPLFEQLPQMCEMFGIPPVKAFLPDHWLSEDDRVEVGALRFSVRHLPGHAPGHIGFFDFENKIAFSGDVLFKDSIGR
TDLYLGNLDVLLNTIRTKMFDLDDDFIVVAGHGPHTTIGREKQHNPFLK

Sequences:

>Translated_209_residues
MFNLQIIPVSAFQQNCSVIWDDNKNAAIIDAGDDADKIIQFVESQNLKVQKLLLTHGHLDHIMAVEKVRDHFGVEVYGSH
IDDKPLFEQLPQMCEMFGIPPVKAFLPDHWLSEDDRVEVGALRFSVRHLPGHAPGHIGFFDFENKIAFSGDVLFKDSIGR
TDLYLGNLDVLLNTIRTKMFDLDDDFIVVAGHGPHTTIGREKQHNPFLK
>Mature_209_residues
MFNLQIIPVSAFQQNCSVIWDDNKNAAIIDAGDDADKIIQFVESQNLKVQKLLLTHGHLDHIMAVEKVRDHFGVEVYGSH
IDDKPLFEQLPQMCEMFGIPPVKAFLPDHWLSEDDRVEVGALRFSVRHLPGHAPGHIGFFDFENKIAFSGDVLFKDSIGR
TDLYLGNLDVLLNTIRTKMFDLDDDFIVVAGHGPHTTIGREKQHNPFLK

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. Glyoxalase II family [H]

Homologues:

Organism=Escherichia coli, GI1787158, Length=209, Percent_Identity=44.4976076555024, Blast_Score=199, Evalue=8e-53,
Organism=Caenorhabditis elegans, GI17538952, Length=188, Percent_Identity=29.7872340425532, Blast_Score=80, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 23657; Mature: 23657

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNLQIIPVSAFQQNCSVIWDDNKNAAIIDAGDDADKIIQFVESQNLKVQKLLLTHGHLD
CCEEEEEEHHHHCCCCCEEEECCCCEEEEECCCCHHHHHHHHHCCCCEEEEHHHHCCCHH
HIMAVEKVRDHFGVEVYGSHIDDKPLFEQLPQMCEMFGIPPVKAFLPDHWLSEDDRVEVG
HHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEE
ALRFSVRHLPGHAPGHIGFFDFENKIAFSGDVLFKDSIGRTDLYLGNLDVLLNTIRTKMF
EEEEEEECCCCCCCCCCEEEECCCEEEECCCEEEECCCCCCEEEECCHHHHHHHHHHHHC
DLDDDFIVVAGHGPHTTIGREKQHNPFLK
CCCCCEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFNLQIIPVSAFQQNCSVIWDDNKNAAIIDAGDDADKIIQFVESQNLKVQKLLLTHGHLD
CCEEEEEEHHHHCCCCCEEEECCCCEEEEECCCCHHHHHHHHHCCCCEEEEHHHHCCCHH
HIMAVEKVRDHFGVEVYGSHIDDKPLFEQLPQMCEMFGIPPVKAFLPDHWLSEDDRVEVG
HHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEE
ALRFSVRHLPGHAPGHIGFFDFENKIAFSGDVLFKDSIGRTDLYLGNLDVLLNTIRTKMF
EEEEEEECCCCCCCCCCEEEECCCEEEECCCEEEECCCCCCEEEECCHHHHHHHHHHHHC
DLDDDFIVVAGHGPHTTIGREKQHNPFLK
CCCCCEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]