| Definition | Actinobacillus pleuropneumoniae serovar 5b str. L20 chromosome, complete genome. |
|---|---|
| Accession | NC_009053 |
| Length | 2,274,482 |
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The map label for this gene is dppD [H]
Identifier: 126207555
GI number: 126207555
Start: 80482
End: 81468
Strand: Direct
Name: dppD [H]
Synonym: APL_0067
Alternate gene names: 126207555
Gene position: 80482-81468 (Clockwise)
Preceding gene: 126207554
Following gene: 126207556
Centisome position: 3.54
GC content: 46.61
Gene sequence:
>987_bases ATGGCTTTATTAACGGTAGATCAGCTTTCTGTCCATTTCGGTGATGAGAAAGCGCCCTTCAAAGCGGTAGATCGTATTAG TTATACGATAAACGAAGGCGAAGTGTTAGGCATTGTCGGTGAATCCGGATCGGGTAAGTCGGTTAGCTCGTTAGCGATTA TGGGCTTAATTGACTTCCCCGGTCGTGTGGCGGCAAACTCGCTTGAGTTTAACGGCAATAATTTATTAGCGTTAAAACCG AAAGAAAAGCAAAAAATTGTCGGTGCGGACGTGTCGATGATTTTCCAAGATGCAATGACCAGTCTTAACCCGAGTTATAC GGTCGGGTTCCAAATTATGGAAGCGTTGAAAGTGCATCAAGGCGGTTCAAAAGCGGCTCGTCGTGAACGTGCGATTGAAT TATTGACGATGGTCGGTATTCCGGATCCGCAATCTCGTTTAGAGGTGTATCCGCATCAGCTTTCGGGCGGTATGAGCCAG CGTGTGATGATCGCAATGGCGATTGCGTGCAATCCGAAATTATTGATTGCGGACGAACCGACCACCGCATTAGACGTAAC GATTCAAGCTCAAATTATTGATTTATTGTTGGAATTACAACGTAAAGAAAATATGGCGTTGATTCTGATTACCCATGATT TAGCGTTAGTAGCGGAATCGGCACATCGTATTATCGTGATGTATGCAGGGCAAGTGGTGGAAGAAGGTAAAGCGGAATTA ATCTTTAAAGCACCGCTTCACCCCTATACGCAAGCGTTGCTGAAAGCGTTGCCGGAGTTTGCCGAAGGTAAATCTCGTTT GCAATCGCTACCCGGAGTGGTTCCCGGCAGATACGACCGACCGCAAGGCTGTTTGCTGAATCCCCGCTGTCCGTATGCAA CGGATAAATGCCGAACCAGCGAACCTGAATTACGTGTTTTAAACGGTCGCCAAGTGAAATGCCATTTCCCGTTAGATGAA AATGGCGTACCGACTACCCAACAATAA
Upstream 100 bases:
>100_bases CCGGGGCTTGCGATTTTATCGCTTGTATTAGCGTTTAACTTAATGGGTGACGGCTTACGTGATGCGCTCGATCCGAAACT GAAACAATAAGGAGAGCAAG
Downstream 100 bases:
>100_bases CGGAGAAGCGAAATGACTGATTTGCAAAAAAACGAACAAAACGCACCGCTTCTTGATGCGAAAAAGCTGAAAAAATATTA TCCGGTTAAGCAAGGTTTAT
Product: dipeptide transporter ATP-binding subunit
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MALLTVDQLSVHFGDEKAPFKAVDRISYTINEGEVLGIVGESGSGKSVSSLAIMGLIDFPGRVAANSLEFNGNNLLALKP KEKQKIVGADVSMIFQDAMTSLNPSYTVGFQIMEALKVHQGGSKAARRERAIELLTMVGIPDPQSRLEVYPHQLSGGMSQ RVMIAMAIACNPKLLIADEPTTALDVTIQAQIIDLLLELQRKENMALILITHDLALVAESAHRIIVMYAGQVVEEGKAEL IFKAPLHPYTQALLKALPEFAEGKSRLQSLPGVVPGRYDRPQGCLLNPRCPYATDKCRTSEPELRVLNGRQVKCHFPLDE NGVPTTQQ
Sequences:
>Translated_328_residues MALLTVDQLSVHFGDEKAPFKAVDRISYTINEGEVLGIVGESGSGKSVSSLAIMGLIDFPGRVAANSLEFNGNNLLALKP KEKQKIVGADVSMIFQDAMTSLNPSYTVGFQIMEALKVHQGGSKAARRERAIELLTMVGIPDPQSRLEVYPHQLSGGMSQ RVMIAMAIACNPKLLIADEPTTALDVTIQAQIIDLLLELQRKENMALILITHDLALVAESAHRIIVMYAGQVVEEGKAEL IFKAPLHPYTQALLKALPEFAEGKSRLQSLPGVVPGRYDRPQGCLLNPRCPYATDKCRTSEPELRVLNGRQVKCHFPLDE NGVPTTQQ >Mature_327_residues ALLTVDQLSVHFGDEKAPFKAVDRISYTINEGEVLGIVGESGSGKSVSSLAIMGLIDFPGRVAANSLEFNGNNLLALKPK EKQKIVGADVSMIFQDAMTSLNPSYTVGFQIMEALKVHQGGSKAARRERAIELLTMVGIPDPQSRLEVYPHQLSGGMSQR VMIAMAIACNPKLLIADEPTTALDVTIQAQIIDLLLELQRKENMALILITHDLALVAESAHRIIVMYAGQVVEEGKAELI FKAPLHPYTQALLKALPEFAEGKSRLQSLPGVVPGRYDRPQGCLLNPRCPYATDKCRTSEPELRVLNGRQVKCHFPLDEN GVPTTQQ
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Escherichia coli, GI1789963, Length=326, Percent_Identity=78.5276073619632, Blast_Score=538, Evalue=1e-154, Organism=Escherichia coli, GI48994883, Length=320, Percent_Identity=48.125, Blast_Score=295, Evalue=2e-81, Organism=Escherichia coli, GI1787548, Length=327, Percent_Identity=43.4250764525994, Blast_Score=269, Evalue=2e-73, Organism=Escherichia coli, GI145693107, Length=331, Percent_Identity=44.4108761329305, Blast_Score=249, Evalue=2e-67, Organism=Escherichia coli, GI1787759, Length=321, Percent_Identity=40.1869158878505, Blast_Score=240, Evalue=8e-65, Organism=Escherichia coli, GI1787500, Length=326, Percent_Identity=41.4110429447853, Blast_Score=227, Evalue=9e-61, Organism=Escherichia coli, GI1788506, Length=258, Percent_Identity=46.1240310077519, Blast_Score=223, Evalue=2e-59, Organism=Escherichia coli, GI1789962, Length=329, Percent_Identity=35.5623100303951, Blast_Score=205, Evalue=3e-54, Organism=Escherichia coli, GI1787758, Length=332, Percent_Identity=35.8433734939759, Blast_Score=192, Evalue=3e-50, Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=37.1794871794872, Blast_Score=147, Evalue=8e-37, Organism=Escherichia coli, GI48994997, Length=257, Percent_Identity=33.852140077821, Blast_Score=139, Evalue=4e-34, Organism=Escherichia coli, GI1787547, Length=263, Percent_Identity=33.4600760456274, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI1789891, Length=239, Percent_Identity=37.2384937238494, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI1786398, Length=257, Percent_Identity=30.7392996108949, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI1787029, Length=254, Percent_Identity=30.7086614173228, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI1788225, Length=234, Percent_Identity=31.6239316239316, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1789032, Length=231, Percent_Identity=32.4675324675325, Blast_Score=109, Evalue=3e-25, Organism=Escherichia coli, GI87081834, Length=234, Percent_Identity=34.1880341880342, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1787089, Length=237, Percent_Identity=32.9113924050633, Blast_Score=104, Evalue=8e-24, Organism=Escherichia coli, GI1786703, Length=233, Percent_Identity=32.618025751073, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1789672, Length=254, Percent_Identity=28.740157480315, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1788644, Length=241, Percent_Identity=32.3651452282158, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI87081791, Length=239, Percent_Identity=30.5439330543933, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788450, Length=235, Percent_Identity=28.936170212766, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787370, Length=242, Percent_Identity=30.9917355371901, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1787712, Length=248, Percent_Identity=29.8387096774194, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787105, Length=220, Percent_Identity=34.0909090909091, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1790162, Length=253, Percent_Identity=26.8774703557312, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1788761, Length=243, Percent_Identity=27.9835390946502, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786872, Length=211, Percent_Identity=31.7535545023697, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786563, Length=228, Percent_Identity=32.0175438596491, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87081709, Length=232, Percent_Identity=25.4310344827586, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1789873, Length=212, Percent_Identity=30.6603773584906, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI87082267, Length=222, Percent_Identity=27.4774774774775, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1786345, Length=228, Percent_Identity=28.5087719298246, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI1786253, Length=217, Percent_Identity=29.0322580645161, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI48994943, Length=274, Percent_Identity=27.007299270073, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI1787792, Length=223, Percent_Identity=28.6995515695067, Blast_Score=75, Evalue=9e-15, Organism=Escherichia coli, GI1786803, Length=252, Percent_Identity=26.1904761904762, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1790467, Length=229, Percent_Identity=26.6375545851528, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI48995001, Length=219, Percent_Identity=27.3972602739726, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1789991, Length=228, Percent_Identity=26.7543859649123, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1789593, Length=236, Percent_Identity=25.4237288135593, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1788165, Length=247, Percent_Identity=25.9109311740891, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787164, Length=229, Percent_Identity=27.5109170305677, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1786319, Length=227, Percent_Identity=26.8722466960352, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1788002, Length=227, Percent_Identity=25.9911894273128, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790190, Length=223, Percent_Identity=24.6636771300448, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787112, Length=236, Percent_Identity=30.9322033898305, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788053, Length=191, Percent_Identity=26.7015706806283, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1790525, Length=225, Percent_Identity=24.4444444444444, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI87082268, Length=251, Percent_Identity=25.4980079681275, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1790739, Length=240, Percent_Identity=24.1666666666667, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787972, Length=249, Percent_Identity=28.1124497991968, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1789586, Length=259, Percent_Identity=26.2548262548263, Blast_Score=62, Evalue=8e-11, Organism=Caenorhabditis elegans, GI193209708, Length=213, Percent_Identity=32.8638497652582, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17558664, Length=222, Percent_Identity=31.981981981982, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI212646699, Length=214, Percent_Identity=27.5700934579439, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193211015, Length=229, Percent_Identity=27.9475982532751, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71996809, Length=229, Percent_Identity=27.9475982532751, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193202349, Length=223, Percent_Identity=29.1479820627803, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115534520, Length=229, Percent_Identity=27.5109170305677, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193211017, Length=229, Percent_Identity=27.9475982532751, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193208177, Length=245, Percent_Identity=26.1224489795918, Blast_Score=65, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=105, Percent_Identity=36.1904761904762, Blast_Score=66, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6319856, Length=223, Percent_Identity=27.3542600896861, Blast_Score=66, Evalue=8e-12, Organism=Drosophila melanogaster, GI28574150, Length=216, Percent_Identity=27.3148148148148, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI116007328, Length=216, Percent_Identity=27.3148148148148, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24582014, Length=238, Percent_Identity=27.3109243697479, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI24582012, Length=238, Percent_Identity=27.3109243697479, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI85725262, Length=228, Percent_Identity=26.7543859649123, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI28574744, Length=232, Percent_Identity=27.5862068965517, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI161076682, Length=244, Percent_Identity=27.0491803278689, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI161076684, Length=244, Percent_Identity=27.0491803278689, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581617, Length=244, Percent_Identity=27.0491803278689, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581615, Length=244, Percent_Identity=27.0491803278689, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 35778; Mature: 35647
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLTVDQLSVHFGDEKAPFKAVDRISYTINEGEVLGIVGESGSGKSVSSLAIMGLIDFP CEEEEEEEEEEEECCCCCCHHHHHHEEEEECCCEEEEEEECCCCCCCHHHEEEEEEECCC GRVAANSLEFNGNNLLALKPKEKQKIVGADVSMIFQDAMTSLNPSYTVGFQIMEALKVHQ CCEECCEEEECCCEEEEECCCHHHHHHCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCC GGSKAARRERAIELLTMVGIPDPQSRLEVYPHQLSGGMSQRVMIAMAIACNPKLLIADEP CCHHHHHHHHHHHHHHEECCCCCHHHHEECCHHHCCCCCHHEEEEEEEECCCEEEEECCC TTALDVTIQAQIIDLLLELQRKENMALILITHDLALVAESAHRIIVMYAGQVVEEGKAEL CCEEEEEEHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHCCCEEEEEEECHHHHCCCEEE IFKAPLHPYTQALLKALPEFAEGKSRLQSLPGVVPGRYDRPQGCLLNPRCPYATDKCRTS EEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC EPELRVLNGRQVKCHFPLDENGVPTTQQ CCCEEEECCCEEEEECCCCCCCCCCCCC >Mature Secondary Structure ALLTVDQLSVHFGDEKAPFKAVDRISYTINEGEVLGIVGESGSGKSVSSLAIMGLIDFP EEEEEEEEEEEECCCCCCHHHHHHEEEEECCCEEEEEEECCCCCCCHHHEEEEEEECCC GRVAANSLEFNGNNLLALKPKEKQKIVGADVSMIFQDAMTSLNPSYTVGFQIMEALKVHQ CCEECCEEEECCCEEEEECCCHHHHHHCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCC GGSKAARRERAIELLTMVGIPDPQSRLEVYPHQLSGGMSQRVMIAMAIACNPKLLIADEP CCHHHHHHHHHHHHHHEECCCCCHHHHEECCHHHCCCCCHHEEEEEEEECCCEEEEECCC TTALDVTIQAQIIDLLLELQRKENMALILITHDLALVAESAHRIIVMYAGQVVEEGKAEL CCEEEEEEHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHCCCEEEEEEECHHHHCCCEEE IFKAPLHPYTQALLKALPEFAEGKSRLQSLPGVVPGRYDRPQGCLLNPRCPYATDKCRTS EEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC EPELRVLNGRQVKCHFPLDENGVPTTQQ CCCEEEECCCEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]