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The map label for this gene is sohB [H]

Identifier: 126207496

GI number: 126207496

Start: 8624

End: 9679

Strand: Direct

Name: sohB [H]

Synonym: APL_0008

Alternate gene names: 126207496

Gene position: 8624-9679 (Clockwise)

Preceding gene: 126207495

Following gene: 126207497

Centisome position: 0.38

GC content: 43.56

Gene sequence:

>1056_bases
ATGTGGAAAGAAATTTTACTTAATTACGGTATTTTTTTATTAGAATTACTGACGTTGTTCGGCATTGTTGCGGTGGTGGT
GATGCTGATTTTGGAAGCTCGAAAACAGCCTGAAAGCGGTGCGATTTCGATTACGAATCTGACCGAAAAATATCAGGAGC
AACAAAAGTCTTTAGCGAATTTTTTCTTGAGTGAAGAAGCACAAAAACAAGCGGAAAAAGCGGAGAAAAAAGCGGCGAAA
GAAAAAGCGAAAGCGGAAAAGAAACGTTTGAAAGAGCTTGGAGAACAGGGAGAAGAAGCGCCGAAGTCACGTTTGTTTGT
ACTTAATTTTACCGGCGATGTTCAGGCGCATGCAGTAAGTTCTCTACGCCGAGAAATTGATGCGGTCATTTCTTTAGCGA
ATAAAGAGGATGAAGTGTTATTAAGATTGGAAAGTCCGGGCGGTGTAGTACACGGTTACGGTTTGGCGGCTTCACAATTA
CAGCGTTTGCGTACTCACAATATTCCGCTGACGGTGGCGGTCGATAAAGTGGCGGCAAGCGGCGGTTATATGATGGCGTG
CGTAGCGAATAAAATCGTATCCGCACCGTTTGCCATTATCGGCTCGGTCGGTGTGGTGGCTCAAGTGCCGAATATTCACC
GTTTACTGAAAAAACACGAAATTGATGTGGACGTGATGACCGCCGGCGAATATAAACGCACGGTAACCTTAGTCGGCGAG
AATACCGAGAAAGGCAAACAAAAATTCCAACAAGAATTGGAAGAAACTCACCAATTATTTAAACAATTCGTAGCGCAGAA
CCGCCCGCAATTGGATATTGAAAAAATCGCCACCGGCGAGCATTGGTTCGGTAAACAGGCGTTGGCACTCGACTTGGTTG
ATGAAATCAATACCAGCGATGATTTATTGCTTAATGCGATCAAAGAAAAAGAGGTGATCGAATTGAAATTTAAACAGAAG
AAAAACCTCACGCAACGTTTAGGCGAGCAAGTGGAACTTTCCGTAGAAAACGTGATCGCCAAGTTACTGCATAAGCAACG
TTCAAATATGATGTAA

Upstream 100 bases:

>100_bases
GTGATGCGGACGCTCAAGCGGCTCAAGCGGTTGTCGATGTATTGGAAGCGAACACAAGCGATCAAAATTAATTTTATTTT
TACAAAAGGAATCTCACGGC

Downstream 100 bases:

>100_bases
TCGAGTGTTAAGCAAGCGGTTCGATTTTGTGAAATTTTTGCAAAATCGAACCGCTTATTTTTTTGTTATGATCTTTACCA
AACAAAACGGTAAAACAGCT

Product: putative periplasmic protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MWKEILLNYGIFLLELLTLFGIVAVVVMLILEARKQPESGAISITNLTEKYQEQQKSLANFFLSEEAQKQAEKAEKKAAK
EKAKAEKKRLKELGEQGEEAPKSRLFVLNFTGDVQAHAVSSLRREIDAVISLANKEDEVLLRLESPGGVVHGYGLAASQL
QRLRTHNIPLTVAVDKVAASGGYMMACVANKIVSAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE
NTEKGKQKFQQELEETHQLFKQFVAQNRPQLDIEKIATGEHWFGKQALALDLVDEINTSDDLLLNAIKEKEVIELKFKQK
KNLTQRLGEQVELSVENVIAKLLHKQRSNMM

Sequences:

>Translated_351_residues
MWKEILLNYGIFLLELLTLFGIVAVVVMLILEARKQPESGAISITNLTEKYQEQQKSLANFFLSEEAQKQAEKAEKKAAK
EKAKAEKKRLKELGEQGEEAPKSRLFVLNFTGDVQAHAVSSLRREIDAVISLANKEDEVLLRLESPGGVVHGYGLAASQL
QRLRTHNIPLTVAVDKVAASGGYMMACVANKIVSAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE
NTEKGKQKFQQELEETHQLFKQFVAQNRPQLDIEKIATGEHWFGKQALALDLVDEINTSDDLLLNAIKEKEVIELKFKQK
KNLTQRLGEQVELSVENVIAKLLHKQRSNMM
>Mature_351_residues
MWKEILLNYGIFLLELLTLFGIVAVVVMLILEARKQPESGAISITNLTEKYQEQQKSLANFFLSEEAQKQAEKAEKKAAK
EKAKAEKKRLKELGEQGEEAPKSRLFVLNFTGDVQAHAVSSLRREIDAVISLANKEDEVLLRLESPGGVVHGYGLAASQL
QRLRTHNIPLTVAVDKVAASGGYMMACVANKIVSAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE
NTEKGKQKFQQELEETHQLFKQFVAQNRPQLDIEKIATGEHWFGKQALALDLVDEINTSDDLLLNAIKEKEVIELKFKQK
KNLTQRLGEQVELSVENVIAKLLHKQRSNMM

Specific function: Possible protease [H]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=350, Percent_Identity=51.4285714285714, Blast_Score=340, Evalue=1e-94,
Organism=Escherichia coli, GI1788064, Length=201, Percent_Identity=28.3582089552239, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002142
- InterPro:   IPR013703 [H]

Pfam domain/function: PF01343 Peptidase_S49; PF08496 Peptidase_S49_N [H]

EC number: 3.4.-.-

Molecular weight: Translated: 39259; Mature: 39259

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKEILLNYGIFLLELLTLFGIVAVVVMLILEARKQPESGAISITNLTEKYQEQQKSLAN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHH
FFLSEEAQKQAEKAEKKAAKEKAKAEKKRLKELGEQGEEAPKSRLFVLNFTGDVQAHAVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH
SLRREIDAVISLANKEDEVLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS
HHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCHHHHHHHHHHHCCCCEEEEEHHHHCC
GGYMMACVANKIVSAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE
CCCHHHHHHHHHHHCHHHHHHCCHHHHCCCHHHHHHHHHCCCEEEEECCCCEEEEEEEEC
NTEKGKQKFQQELEETHQLFKQFVAQNRPQLDIEKIATGEHWFGKQALALDLVDEINTSD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHCCHHHHHHHHHHCCCCH
DLLLNAIKEKEVIELKFKQKKNLTQRLGEQVELSVENVIAKLLHKQRSNMM
HHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MWKEILLNYGIFLLELLTLFGIVAVVVMLILEARKQPESGAISITNLTEKYQEQQKSLAN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHH
FFLSEEAQKQAEKAEKKAAKEKAKAEKKRLKELGEQGEEAPKSRLFVLNFTGDVQAHAVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH
SLRREIDAVISLANKEDEVLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS
HHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCHHHHHHHHHHHCCCCEEEEEHHHHCC
GGYMMACVANKIVSAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE
CCCHHHHHHHHHHHCHHHHHHCCHHHHCCCHHHHHHHHHCCCEEEEECCCCEEEEEEEEC
NTEKGKQKFQQELEETHQLFKQFVAQNRPQLDIEKIATGEHWFGKQALALDLVDEINTSD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHCCHHHHHHHHHHCCCCH
DLLLNAIKEKEVIELKFKQKKNLTQRLGEQVELSVENVIAKLLHKQRSNMM
HHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]