Definition | Shewanella baltica OS155 chromosome, complete genome. |
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Accession | NC_009052 |
Length | 5,127,376 |
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The map label for this gene is 126175640
Identifier: 126175640
GI number: 126175640
Start: 4036781
End: 4037740
Strand: Direct
Name: 126175640
Synonym: Sbal_3443
Alternate gene names: NA
Gene position: 4036781-4037740 (Clockwise)
Preceding gene: 126175638
Following gene: 126175643
Centisome position: 78.73
GC content: 49.79
Gene sequence:
>960_bases ATGCCCGATATTGTCATTGCCTTTTTTGCCTTAGGCTTGTTAGCTGGCCTAGTGAAGTCAGATCTTAAAGTCCCCCCCGC GATCTACGAAACCCTATCCATACTGTTAATGCTCACTTTGGGCTTAAAGGGCGGAATGGCGCTCCACGGTCACACCCAAA ACTTAGTGCTCACTGAGCTGTTAGCGGTTGTTGCTTTAGGCTTCATTATCCCCTTGGTCTTATACCCAGTGTTAACTCGG CTGGTTCGCATTGGTCACACAGATGCTATTAGCATTGCCGCCCATTACGGCTCCGTTAGCGCGGGAACCTTTGCGGTAGT GATGGCTATGGTGGATAAATCAGGGCTGATCTTAAGGCCCGAAACCACCCTGTATCTCGTGCTGCTAGAACTGCCGGCGA TCGTCGTGATGCTCTGGCTACATAGATACTTAAGTGCCAAAAAAGCAATTGAAACATCACCCAAGAATGAAACTCAATCG AGCGTATTGCACGAAGCGTTAACCAGCCGCGGCGTTGTCTTACTCGTTGGCGGCGTAGTGATTGGTTGGCTTTACGGCCC AACGGGGCTTGCGCCGCTCACACCTGTGCTACTAGGCGGATTCAAAACTTTACTGGCATTATTTTTACTGGAAATGGGCT TAGTGACGGCCAAAGTGTGTTTGCCGCTACCACTAAAACAATGGCGCTTATTGGTGTTCGCCGCCGTAACGCCCTTTGTA TTGGCTTGGTGCGGTATTGCCGTAGGATTATGGCTGGACTTACCTTCTGGCAGTATTTTAGTGCTAGCAGCATTAAGTGC CAGTGCATCTTATATCGCAGCGCCTGCGGCCATTCGAGCCGCAATACCCGAAGCCAATATTGGACTGGCTATGCTGGCCT CACTCGGCATTACGTTTCCGGTTAACGTGTTAATTGGCTTACCTTTATATCAACACTGGGTCATGCTCATTACGGCTTAA
Upstream 100 bases:
>100_bases TTCAATATAACCAATTAGGTCCAAAATCACCAGCCATCAGGACCACCCGACATTTAAGCCTGTTCTGCACGGCTTAAAAA TCAAACTTAATGAGATACTT
Downstream 100 bases:
>100_bases TGGCGCCGCTTGGTACTTCTTCACCGAATAAAAACCAATGAAAAGGGAGACATTATTGTCTCCCTTTTCATCTTGCTTAA GCACATATTATTTAAGGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Sodium Bicarbonate Cotransporter; Sodium-Dependent Bicarbonate Transporter; SBT Type Permease Sodium-Bicarbonate; Conserved Domain Protein
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MPDIVIAFFALGLLAGLVKSDLKVPPAIYETLSILLMLTLGLKGGMALHGHTQNLVLTELLAVVALGFIIPLVLYPVLTR LVRIGHTDAISIAAHYGSVSAGTFAVVMAMVDKSGLILRPETTLYLVLLELPAIVVMLWLHRYLSAKKAIETSPKNETQS SVLHEALTSRGVVLLVGGVVIGWLYGPTGLAPLTPVLLGGFKTLLALFLLEMGLVTAKVCLPLPLKQWRLLVFAAVTPFV LAWCGIAVGLWLDLPSGSILVLAALSASASYIAAPAAIRAAIPEANIGLAMLASLGITFPVNVLIGLPLYQHWVMLITA
Sequences:
>Translated_319_residues MPDIVIAFFALGLLAGLVKSDLKVPPAIYETLSILLMLTLGLKGGMALHGHTQNLVLTELLAVVALGFIIPLVLYPVLTR LVRIGHTDAISIAAHYGSVSAGTFAVVMAMVDKSGLILRPETTLYLVLLELPAIVVMLWLHRYLSAKKAIETSPKNETQS SVLHEALTSRGVVLLVGGVVIGWLYGPTGLAPLTPVLLGGFKTLLALFLLEMGLVTAKVCLPLPLKQWRLLVFAAVTPFV LAWCGIAVGLWLDLPSGSILVLAALSASASYIAAPAAIRAAIPEANIGLAMLASLGITFPVNVLIGLPLYQHWVMLITA >Mature_318_residues PDIVIAFFALGLLAGLVKSDLKVPPAIYETLSILLMLTLGLKGGMALHGHTQNLVLTELLAVVALGFIIPLVLYPVLTRL VRIGHTDAISIAAHYGSVSAGTFAVVMAMVDKSGLILRPETTLYLVLLELPAIVVMLWLHRYLSAKKAIETSPKNETQSS VLHEALTSRGVVLLVGGVVIGWLYGPTGLAPLTPVLLGGFKTLLALFLLEMGLVTAKVCLPLPLKQWRLLVFAAVTPFVL AWCGIAVGLWLDLPSGSILVLAALSASASYIAAPAAIRAAIPEANIGLAMLASLGITFPVNVLIGLPLYQHWVMLITA
Specific function: Unknown
COG id: COG3329
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33741; Mature: 33610
Theoretical pI: Translated: 9.01; Mature: 9.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDIVIAFFALGLLAGLVKSDLKVPPAIYETLSILLMLTLGLKGGMALHGHTQNLVLTEL CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHH LAVVALGFIIPLVLYPVLTRLVRIGHTDAISIAAHYGSVSAGTFAVVMAMVDKSGLILRP HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECC ETTLYLVLLELPAIVVMLWLHRYLSAKKAIETSPKNETQSSVLHEALTSRGVVLLVGGVV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEHHHHH IGWLYGPTGLAPLTPVLLGGFKTLLALFLLEMGLVTAKVCLPLPLKQWRLLVFAAVTPFV HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH LAWCGIAVGLWLDLPSGSILVLAALSASASYIAAPAAIRAAIPEANIGLAMLASLGITFP HHHHHHHHHHHEECCCCCEEEEEEHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHH VNVLIGLPLYQHWVMLITA HHHHHCCHHHHHHHHHCCC >Mature Secondary Structure PDIVIAFFALGLLAGLVKSDLKVPPAIYETLSILLMLTLGLKGGMALHGHTQNLVLTEL CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHH LAVVALGFIIPLVLYPVLTRLVRIGHTDAISIAAHYGSVSAGTFAVVMAMVDKSGLILRP HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECC ETTLYLVLLELPAIVVMLWLHRYLSAKKAIETSPKNETQSSVLHEALTSRGVVLLVGGVV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEHHHHH IGWLYGPTGLAPLTPVLLGGFKTLLALFLLEMGLVTAKVCLPLPLKQWRLLVFAAVTPFV HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH LAWCGIAVGLWLDLPSGSILVLAALSASASYIAAPAAIRAAIPEANIGLAMLASLGITFP HHHHHHHHHHHEECCCCCEEEEEEHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHH VNVLIGLPLYQHWVMLITA HHHHHCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA