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The map label for this gene is yddU [C]

Identifier: 126175600

GI number: 126175600

Start: 3983968

End: 3986202

Strand: Direct

Name: yddU [C]

Synonym: Sbal_3403

Alternate gene names: 126175600

Gene position: 3983968-3986202 (Clockwise)

Preceding gene: 126175599

Following gene: 126175601

Centisome position: 77.7

GC content: 45.82

Gene sequence:

>2235_bases
ATGATTAGTCAAGAACAAGATATCTTTTTTTTAGACGAACAACCGTCACCACAACACCTCGAAAATCAAAAAACAGTCAA
AATACTCACGGTGGACGATGACTCAAACTTCCAACGTTCGACCGCCTTCGCGTTATCTACCCTCAAAGTATTAGATTGTA
AAATTGAGCTGGCCCAAGCCTTTAGCTATGCAGAAGCCTGCCAAGTGTTAACGAAGGAAAATGATTTTGCGATCGCCTTA
ATCGATGTGGTGATGGAAACCGAAGATGCAGGGCTACGGTTAGTCCGTGCCATTCGGGAAGTGCTCGGTAACGAAAAAAT
CCGCATTATTTTGCTTACAGGTCAGCCTGGTATGGCCCCTATTTTCGATGTAATGCGAAATTACGATATCAACGACTATT
GGACTAAATCCGAGTTATCGGCCGATAGACTGCAAACTATCCTCACGACTAACCTACGCTCATATCAACAAATTAGCAGT
ATTGCCAATGCTAAGCGGGGTTTGCAACTGATTGCCGAGTCCAGCGGCGCGCTCTACACCTCTCGCAATATCAAAGAACT
CTCAGGCAAGATGCTGCGACAATTATCCCAGCTATTAAACCTGCCCCATGGCGGCATTGTGTGCGTGAAATCAACGGGGG
AATTAACTGAACAGGGTATTTCCCACCAAATTATTGCCGCATCGGGCGAGTTTGAACCTTATTTTGGCTATGCTTTACAG
CAGCTTGAGCAGCAACATATCCGAGCACAACTTGAACTTTGCCTGAGCCGCAGGCAGTCTCGTATCGAAAATGACTTTAC
TTGCCTCTTCTTCCCCGACGAACTCGCAGGCGCCGATTACTCCGTTTATTTAGCCACAGGCAGACCACTAGATATCACGG
AAACTGAACTGATCCGTGTGTTTAGTATGAATATTTGTGGCGGCTTGCATAGCGTGTCGCTAATGAGCCAACTAGATAAG
ATTGCTTTTGAAGATCCGCTCGTCAAAATCCCTAATCTCAACGTGCTGATCCGCACCTTAGAAGGCGTGCTGGCGGAAGA
CATTCGTGAAAAATTTAATTTATTGATCATTGATATTGATAAGTTTTCCGACTTTAATCGTGTATTTGGTTCGCCCCAAG
GCAACGAGATGCTCAAACACGTTGCCTCTTGTTTGCGTGAACACTTTGATGCTTGTGTGTTAGTCGCTCGCCTCAAGGAT
GATAAATTTGCCGTGCTCGGCCCTAAGACCTTAGTCACCGCCGACATTATTAGCCGACTGTTTATTCAACCCTATCAACA
GGGAAAATCGAAGATCACGGTCAATATCAGCACAGTCACACTACCGCTAGAATTAGCCGATGGCACTGCGGTTGATGCCA
TAACACAAGTCAACATGGCCCTGAAAACTGCCAAAAAGTTAGGTATTAGACAACATGTGACTTACCAACAAGCCAATGAC
GATAATGTGGCCTATCACTTCGAACTCTTACAAGCGCTGCAACACAGTATTACCTGTAATGACATCCATATTGCACTGCA
GCCGCAAGTCTGTATTAAAACGGGTGAAGTCGTCGGGGTTGAAGCGCTGGCTCGCTGGACCTTGCCAAATGGTCAAAATG
TGCCGCCGTTGGATTTTATCCCAATTGCCGAAGCGACAGGTTTGATCACCCAACTCGGTGAGCAACTATTCGTGCAATCT
TGCCAAGCACTCTGCGCACTCAATGAGGCGGGTTATACCAATTTGTGTATGGGAGTGAACTTATCGGCCATGCAGTTCGA
ACAGGAGAACATCGTCGATATTTTAAAACAGCACATTGCCGACGCTAACATGCCTCCAGGTCAGATAGAAGTCGAAGTCA
CCGAATCGATTGCGATGCAAAATTTCGAAACCATCCGCAAGCAGTTAAATGACTTACGCTCGATAGATATTAGAGTCGCG
ATTGACGATTTTGGTACTGGATTTTCCTCATTAGCCTATCTCAGCAAACTGACCTTCGACCGCATTAAGATTGATAAATC
CTTTATCGACAATGTCACCTCAGATGATGGCGCCGCTGCGATAGTCGATAGCATTATCTTGTTAGGACAACGCTTCCACA
TGAATGTGATTGCCGAAGGCGTCGAGACTAAAGAGCAAGCGAAATGGCTAAGCGACCGCGGCTGCCACGATGCCCAAGGC
TACTTTTATGCTAAGCCAATGCCACTACCGGAGTTATTAACTTGGCTTAAAAACTACCAAAAAACACCACTATGA

Upstream 100 bases:

>100_bases
TGAATAAACTCCATCTGTCGCAAATACTCTATGTATAAAAAATGCTCGTTTTATTTGCTGAGTGAATAAGGATGCGAATG
GCATCTCAAGGATGGAGAGA

Downstream 100 bases:

>100_bases
CAGCGCCATCGCAATTGACTCAGCCTACCTTCTGGGGCTACTGGCTCAGATTCATGCTGCCGTGGTTATTGTTGGTGCCC
ATACTCACCACTTTGCTTTA

Product: response regulator receiver modulated diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 744; Mature: 744

Protein sequence:

>744_residues
MISQEQDIFFLDEQPSPQHLENQKTVKILTVDDDSNFQRSTAFALSTLKVLDCKIELAQAFSYAEACQVLTKENDFAIAL
IDVVMETEDAGLRLVRAIREVLGNEKIRIILLTGQPGMAPIFDVMRNYDINDYWTKSELSADRLQTILTTNLRSYQQISS
IANAKRGLQLIAESSGALYTSRNIKELSGKMLRQLSQLLNLPHGGIVCVKSTGELTEQGISHQIIAASGEFEPYFGYALQ
QLEQQHIRAQLELCLSRRQSRIENDFTCLFFPDELAGADYSVYLATGRPLDITETELIRVFSMNICGGLHSVSLMSQLDK
IAFEDPLVKIPNLNVLIRTLEGVLAEDIREKFNLLIIDIDKFSDFNRVFGSPQGNEMLKHVASCLREHFDACVLVARLKD
DKFAVLGPKTLVTADIISRLFIQPYQQGKSKITVNISTVTLPLELADGTAVDAITQVNMALKTAKKLGIRQHVTYQQAND
DNVAYHFELLQALQHSITCNDIHIALQPQVCIKTGEVVGVEALARWTLPNGQNVPPLDFIPIAEATGLITQLGEQLFVQS
CQALCALNEAGYTNLCMGVNLSAMQFEQENIVDILKQHIADANMPPGQIEVEVTESIAMQNFETIRKQLNDLRSIDIRVA
IDDFGTGFSSLAYLSKLTFDRIKIDKSFIDNVTSDDGAAAIVDSIILLGQRFHMNVIAEGVETKEQAKWLSDRGCHDAQG
YFYAKPMPLPELLTWLKNYQKTPL

Sequences:

>Translated_744_residues
MISQEQDIFFLDEQPSPQHLENQKTVKILTVDDDSNFQRSTAFALSTLKVLDCKIELAQAFSYAEACQVLTKENDFAIAL
IDVVMETEDAGLRLVRAIREVLGNEKIRIILLTGQPGMAPIFDVMRNYDINDYWTKSELSADRLQTILTTNLRSYQQISS
IANAKRGLQLIAESSGALYTSRNIKELSGKMLRQLSQLLNLPHGGIVCVKSTGELTEQGISHQIIAASGEFEPYFGYALQ
QLEQQHIRAQLELCLSRRQSRIENDFTCLFFPDELAGADYSVYLATGRPLDITETELIRVFSMNICGGLHSVSLMSQLDK
IAFEDPLVKIPNLNVLIRTLEGVLAEDIREKFNLLIIDIDKFSDFNRVFGSPQGNEMLKHVASCLREHFDACVLVARLKD
DKFAVLGPKTLVTADIISRLFIQPYQQGKSKITVNISTVTLPLELADGTAVDAITQVNMALKTAKKLGIRQHVTYQQAND
DNVAYHFELLQALQHSITCNDIHIALQPQVCIKTGEVVGVEALARWTLPNGQNVPPLDFIPIAEATGLITQLGEQLFVQS
CQALCALNEAGYTNLCMGVNLSAMQFEQENIVDILKQHIADANMPPGQIEVEVTESIAMQNFETIRKQLNDLRSIDIRVA
IDDFGTGFSSLAYLSKLTFDRIKIDKSFIDNVTSDDGAAAIVDSIILLGQRFHMNVIAEGVETKEQAKWLSDRGCHDAQG
YFYAKPMPLPELLTWLKNYQKTPL
>Mature_744_residues
MISQEQDIFFLDEQPSPQHLENQKTVKILTVDDDSNFQRSTAFALSTLKVLDCKIELAQAFSYAEACQVLTKENDFAIAL
IDVVMETEDAGLRLVRAIREVLGNEKIRIILLTGQPGMAPIFDVMRNYDINDYWTKSELSADRLQTILTTNLRSYQQISS
IANAKRGLQLIAESSGALYTSRNIKELSGKMLRQLSQLLNLPHGGIVCVKSTGELTEQGISHQIIAASGEFEPYFGYALQ
QLEQQHIRAQLELCLSRRQSRIENDFTCLFFPDELAGADYSVYLATGRPLDITETELIRVFSMNICGGLHSVSLMSQLDK
IAFEDPLVKIPNLNVLIRTLEGVLAEDIREKFNLLIIDIDKFSDFNRVFGSPQGNEMLKHVASCLREHFDACVLVARLKD
DKFAVLGPKTLVTADIISRLFIQPYQQGKSKITVNISTVTLPLELADGTAVDAITQVNMALKTAKKLGIRQHVTYQQAND
DNVAYHFELLQALQHSITCNDIHIALQPQVCIKTGEVVGVEALARWTLPNGQNVPPLDFIPIAEATGLITQLGEQLFVQS
CQALCALNEAGYTNLCMGVNLSAMQFEQENIVDILKQHIADANMPPGQIEVEVTESIAMQNFETIRKQLNDLRSIDIRVA
IDDFGTGFSSLAYLSKLTFDRIKIDKSFIDNVTSDDGAAAIVDSIILLGQRFHMNVIAEGVETKEQAKWLSDRGCHDAQG
YFYAKPMPLPELLTWLKNYQKTPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=426, Percent_Identity=29.5774647887324, Blast_Score=197, Evalue=3e-51,
Organism=Escherichia coli, GI1787541, Length=511, Percent_Identity=27.9843444227006, Blast_Score=196, Evalue=3e-51,
Organism=Escherichia coli, GI1788502, Length=243, Percent_Identity=32.9218106995885, Blast_Score=152, Evalue=7e-38,
Organism=Escherichia coli, GI87081980, Length=260, Percent_Identity=33.8461538461538, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI226510982, Length=431, Percent_Identity=28.0742459396752, Blast_Score=151, Evalue=2e-37,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=34.8178137651822, Blast_Score=149, Evalue=5e-37,
Organism=Escherichia coli, GI1786507, Length=256, Percent_Identity=33.59375, Blast_Score=147, Evalue=3e-36,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=34.5991561181435, Blast_Score=141, Evalue=2e-34,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=33.1983805668016, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1787055, Length=367, Percent_Identity=24.7956403269755, Blast_Score=130, Evalue=4e-31,
Organism=Escherichia coli, GI1788849, Length=279, Percent_Identity=30.4659498207885, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87082096, Length=244, Percent_Identity=29.5081967213115, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=36, Blast_Score=82, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 83043; Mature: 83043

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISQEQDIFFLDEQPSPQHLENQKTVKILTVDDDSNFQRSTAFALSTLKVLDCKIELAQA
CCCCCCCEEEECCCCCHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
FSYAEACQVLTKENDFAIALIDVVMETEDAGLRLVRAIREVLGNEKIRIILLTGQPGMAP
HHHHHHHHHHHCCCCEEEEEEEHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHH
IFDVMRNYDINDYWTKSELSADRLQTILTTNLRSYQQISSIANAKRGLQLIAESSGALYT
HHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEE
SRNIKELSGKMLRQLSQLLNLPHGGIVCVKSTGELTEQGISHQIIAASGEFEPYFGYALQ
CCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCCCEEEEEECCCCCHHHHHHHH
QLEQQHIRAQLELCLSRRQSRIENDFTCLFFPDELAGADYSVYLATGRPLDITETELIRV
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCEEEEEECCCCCCCCHHHHHHH
FSMNICGGLHSVSLMSQLDKIAFEDPLVKIPNLNVLIRTLEGVLAEDIREKFNLLIIDID
HHHHHHCCHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEEC
KFSDFNRVFGSPQGNEMLKHVASCLREHFDACVLVARLKDDKFAVLGPKTLVTADIISRL
CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEECCHHHHHHHHHHHH
FIQPYQQGKSKITVNISTVTLPLELADGTAVDAITQVNMALKTAKKLGIRQHVTYQQAND
HHHHHHCCCCEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCHHHHCEEECCCC
DNVAYHFELLQALQHSITCNDIHIALQPQVCIKTGEVVGVEALARWTLPNGQNVPPLDFI
CCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCEEEHHHHHHCCCCCCCCCCCCCEE
PIAEATGLITQLGEQLFVQSCQALCALNEAGYTNLCMGVNLSAMQFEQENIVDILKQHIA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCHHHHHHHHHHHHC
DANMPPGQIEVEVTESIAMQNFETIRKQLNDLRSIDIRVAIDDFGTGFSSLAYLSKLTFD
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHH
RIKIDKSFIDNVTSDDGAAAIVDSIILLGQRFHMNVIAEGVETKEQAKWLSDRGCHDAQG
HHEECHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
YFYAKPMPLPELLTWLKNYQKTPL
EEEECCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MISQEQDIFFLDEQPSPQHLENQKTVKILTVDDDSNFQRSTAFALSTLKVLDCKIELAQA
CCCCCCCEEEECCCCCHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
FSYAEACQVLTKENDFAIALIDVVMETEDAGLRLVRAIREVLGNEKIRIILLTGQPGMAP
HHHHHHHHHHHCCCCEEEEEEEHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHH
IFDVMRNYDINDYWTKSELSADRLQTILTTNLRSYQQISSIANAKRGLQLIAESSGALYT
HHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEE
SRNIKELSGKMLRQLSQLLNLPHGGIVCVKSTGELTEQGISHQIIAASGEFEPYFGYALQ
CCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCCCEEEEEECCCCCHHHHHHHH
QLEQQHIRAQLELCLSRRQSRIENDFTCLFFPDELAGADYSVYLATGRPLDITETELIRV
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCEEEEEECCCCCCCCHHHHHHH
FSMNICGGLHSVSLMSQLDKIAFEDPLVKIPNLNVLIRTLEGVLAEDIREKFNLLIIDID
HHHHHHCCHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEEC
KFSDFNRVFGSPQGNEMLKHVASCLREHFDACVLVARLKDDKFAVLGPKTLVTADIISRL
CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEECCHHHHHHHHHHHH
FIQPYQQGKSKITVNISTVTLPLELADGTAVDAITQVNMALKTAKKLGIRQHVTYQQAND
HHHHHHCCCCEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCHHHHCEEECCCC
DNVAYHFELLQALQHSITCNDIHIALQPQVCIKTGEVVGVEALARWTLPNGQNVPPLDFI
CCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCEEEHHHHHHCCCCCCCCCCCCCEE
PIAEATGLITQLGEQLFVQSCQALCALNEAGYTNLCMGVNLSAMQFEQENIVDILKQHIA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCHHHHHHHHHHHHC
DANMPPGQIEVEVTESIAMQNFETIRKQLNDLRSIDIRVAIDDFGTGFSSLAYLSKLTFD
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHH
RIKIDKSFIDNVTSDDGAAAIVDSIILLGQRFHMNVIAEGVETKEQAKWLSDRGCHDAQG
HHEECHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
YFYAKPMPLPELLTWLKNYQKTPL
EEEECCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]