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The map label for this gene is cph2 [H]

Identifier: 126174348

GI number: 126174348

Start: 2472694

End: 2473725

Strand: Direct

Name: cph2 [H]

Synonym: Sbal_2130

Alternate gene names: 126174348

Gene position: 2472694-2473725 (Clockwise)

Preceding gene: 126174347

Following gene: 126174349

Centisome position: 48.23

GC content: 46.51

Gene sequence:

>1032_bases
ATGGATAAGAAATTGGTTTACCCATTTATAACGGAAGCTTTGCGGCTGAGCGAGAATGGTCTAGCGGTGTTAGACAAGCA
TAATCATTTTATCTTTTATAATAATACCTTTGCGAAAATGTTTGGTTTTGTTGATCAAGACATGGTCGGCAAGCATTTTG
ACGACATGATGCGCTTTGCCTTTACCCATAAACAGGGACCGAAAATTGAGCATGAAACCATAGAGGAATGGCTCGAGCTT
ATTCATGCGCATCAACGTAAATCGGCTTTTAGACGTTTTGAAGTGGATCTGGTCGACGGTCGCTGGTTGCAACTCTCGGA
GCAGGTTTATCACAATGGCGATATGGTGATTGTTTGCACGGATATCACCCAGCTAAAGCAGGTCGAGTTTGCCCTCAGGA
ATGCGCAAACGGAGTTGAATCGTCTCGCGCTCACCGATGAGTTAACGGGGATTGCCAATCGGCGGCACTTTTTTCAGCAG
TTAGAGCACGAAATCAAACGCTTGAGTCGCTTACAGTTGCCATTATGCCTAGTGATGATGGACATCGATAATTTTAAACT
CGTCAATGATCGCTATGGTCATCAAGTCGGTGACAAGATATTGCAGCATTTTACCCAATTCATCAGCGCCCGAACCCGTC
CCTACGATATTTTTGGCCGCTTAGGCGGTGAAGAGTTTGCTCTGTTACTGCCAGAGACCACAGTTGATGCGGCCCAGAAA
ATCGTGACGCGGATGATGTCATCCCTTGCCAATGAAGATATTTCTGCAATCGTGGCTGATTTTCAATATCAATTTTCAGC
AGGGGTTAGCGCATTAACCCCTGTGATTATTCACCATGAAATCGATAACAGTGCTGATATTGCAGATGTGGAGCAGGTTG
CATTGCCCGTGGAAACAGGAAGTCAGTGCCGCTCGGATGCTGAAAAGCTGGTGGCCGAGGCGGATAAAGCGCTCTATCAA
GCTAAAACCCTCGGGCGAAATCGCGTGGTGATATGGGACGATGTGATGTTAACGGGGAACAAGCCTAGCTGA

Upstream 100 bases:

>100_bases
AATGTGTAATCTAAGGTATAAGCGCTGTGATCCGCGCAGAACACTGCTACGCTAAACATATCTAAGTTCTTATTTAAATT
TGTCACTGCTAGGAAGGCCG

Downstream 100 bases:

>100_bases
GTAAAGTGTATCTTAATTAGTGTATTAGTTGTGTAGAGTGTCAGTCATCCATATGTAACTAAGACTGTGCCACTAGGCCA
GCGTGTCGCGAATCCAAGAA

Product: diguanylate cyclase with PAS/PAC sensor

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MDKKLVYPFITEALRLSENGLAVLDKHNHFIFYNNTFAKMFGFVDQDMVGKHFDDMMRFAFTHKQGPKIEHETIEEWLEL
IHAHQRKSAFRRFEVDLVDGRWLQLSEQVYHNGDMVIVCTDITQLKQVEFALRNAQTELNRLALTDELTGIANRRHFFQQ
LEHEIKRLSRLQLPLCLVMMDIDNFKLVNDRYGHQVGDKILQHFTQFISARTRPYDIFGRLGGEEFALLLPETTVDAAQK
IVTRMMSSLANEDISAIVADFQYQFSAGVSALTPVIIHHEIDNSADIADVEQVALPVETGSQCRSDAEKLVAEADKALYQ
AKTLGRNRVVIWDDVMLTGNKPS

Sequences:

>Translated_343_residues
MDKKLVYPFITEALRLSENGLAVLDKHNHFIFYNNTFAKMFGFVDQDMVGKHFDDMMRFAFTHKQGPKIEHETIEEWLEL
IHAHQRKSAFRRFEVDLVDGRWLQLSEQVYHNGDMVIVCTDITQLKQVEFALRNAQTELNRLALTDELTGIANRRHFFQQ
LEHEIKRLSRLQLPLCLVMMDIDNFKLVNDRYGHQVGDKILQHFTQFISARTRPYDIFGRLGGEEFALLLPETTVDAAQK
IVTRMMSSLANEDISAIVADFQYQFSAGVSALTPVIIHHEIDNSADIADVEQVALPVETGSQCRSDAEKLVAEADKALYQ
AKTLGRNRVVIWDDVMLTGNKPS
>Mature_343_residues
MDKKLVYPFITEALRLSENGLAVLDKHNHFIFYNNTFAKMFGFVDQDMVGKHFDDMMRFAFTHKQGPKIEHETIEEWLEL
IHAHQRKSAFRRFEVDLVDGRWLQLSEQVYHNGDMVIVCTDITQLKQVEFALRNAQTELNRLALTDELTGIANRRHFFQQ
LEHEIKRLSRLQLPLCLVMMDIDNFKLVNDRYGHQVGDKILQHFTQFISARTRPYDIFGRLGGEEFALLLPETTVDAAQK
IVTRMMSSLANEDISAIVADFQYQFSAGVSALTPVIIHHEIDNSADIADVEQVALPVETGSQCRSDAEKLVAEADKALYQ
AKTLGRNRVVIWDDVMLTGNKPS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=199, Percent_Identity=33.1658291457286, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87081881, Length=224, Percent_Identity=32.1428571428571, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787262, Length=191, Percent_Identity=31.413612565445, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788381, Length=321, Percent_Identity=26.1682242990654, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788085, Length=212, Percent_Identity=30.6603773584906, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI145693134, Length=190, Percent_Identity=30, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787816, Length=189, Percent_Identity=29.1005291005291, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786584, Length=202, Percent_Identity=28.2178217821782, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787541, Length=338, Percent_Identity=23.9644970414201, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87081977, Length=193, Percent_Identity=31.6062176165803, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=28.3870967741935, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788956, Length=202, Percent_Identity=29.2079207920792, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 39370; Mature: 39370

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKLVYPFITEALRLSENGLAVLDKHNHFIFYNNTFAKMFGFVDQDMVGKHFDDMMRFA
CCCCEEHHHHHHHHHHCCCCEEEEECCCEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHH
FTHKQGPKIEHETIEEWLELIHAHQRKSAFRRFEVDLVDGRWLQLSEQVYHNGDMVIVCT
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCEEEEEC
DITQLKQVEFALRNAQTELNRLALTDELTGIANRRHFFQQLEHEIKRLSRLQLPLCLVMM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEE
DIDNFKLVNDRYGHQVGDKILQHFTQFISARTRPYDIFGRLGGEEFALLLPETTVDAAQK
ECCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEECCCHHHHHHHH
IVTRMMSSLANEDISAIVADFQYQFSAGVSALTPVIIHHEIDNSADIADVEQVALPVETG
HHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHEEEEEECCCCCCHHHHHHHEECCCCC
SQCRSDAEKLVAEADKALYQAKTLGRNRVVIWDDVMLTGNKPS
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECEEECCCCCC
>Mature Secondary Structure
MDKKLVYPFITEALRLSENGLAVLDKHNHFIFYNNTFAKMFGFVDQDMVGKHFDDMMRFA
CCCCEEHHHHHHHHHHCCCCEEEEECCCEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHH
FTHKQGPKIEHETIEEWLELIHAHQRKSAFRRFEVDLVDGRWLQLSEQVYHNGDMVIVCT
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCEEEEEC
DITQLKQVEFALRNAQTELNRLALTDELTGIANRRHFFQQLEHEIKRLSRLQLPLCLVMM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEE
DIDNFKLVNDRYGHQVGDKILQHFTQFISARTRPYDIFGRLGGEEFALLLPETTVDAAQK
ECCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEECCCHHHHHHHH
IVTRMMSSLANEDISAIVADFQYQFSAGVSALTPVIIHHEIDNSADIADVEQVALPVETG
HHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHEEEEEECCCCCCHHHHHHHEECCCCC
SQCRSDAEKLVAEADKALYQAKTLGRNRVVIWDDVMLTGNKPS
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]