Click here to switch to the map view.

The map label for this gene is intD [C]

Identifier: 126173818

GI number: 126173818

Start: 1845307

End: 1846437

Strand: Reverse

Name: intD [C]

Synonym: Sbal_1584

Alternate gene names: 126173818

Gene position: 1846437-1845307 (Counterclockwise)

Preceding gene: 126173819

Following gene: 126173817

Centisome position: 36.01

GC content: 46.51

Gene sequence:

>1131_bases
ATGCCGAGTATTAAACTACAACAGTCAATGATTGATAATTTACCCACACCACAGAAAATAACGGTGTTTTACGATAAATA
TTTTCCCGCTTTTTTTATGCGAGCCTATCCCTCTGGTATTCGGTGTTATTACGTTCGCTTCCAGTATCAAGGTTTGCGAC
AACTTCATGTTATCGGCAATGCAAATGATATCACGCTTGATGATGCGCGACTTGAGGCAAGAAAGCAGATAGATGCGTTA
CGTTATGGGGTGGTGCGTGAACCTGCGCCCTCTCTTACGCTCTGTGCGTTCGCTGAAGAGTTTTTTCCAAGATATGCCCG
TCATTGGAAGCCCTCAACATTACTCAATAGCCAGCGTGGTTTTACGCGGCATATCGCCCCTGTGTTGGGTGATGTTCCGC
TTGCAGCGTTGACACGACAACACATAGAGCAGTGGTTTGATGGTATGCATGCCTCGAAAGGCATGGCTAATCGGTTGTTG
CCGTTGTTGTCGGTAATGATGCAGCAAGCCGAAGTGTATGAGTATCGTCCAGCGCAAAGTAACCCTTGCAAAGGCTTTAA
GCGCTATAAGTCTACGCACAGTGAGCGTTATTTATCTGAGGAAGAACTCAAGCGGCTATGGTTGGCTTTAGATAGCCATG
AAAAAGCGTCACCCGTTGCGGTGATGGTCTTACGGTTATTAATCTTAACGGGTTGTCGTTGTAACGAAGTGTGCTCCGTC
AAATGGGCTGATTATCGGCAAGGGCATTGGTATTTGCCCGACAGTAAAACTGGCGCGAAAACGGTGTTTCTGTCTTCCTT
TGCGCGGGAGTTGCTGAGTGATTGGCCGCAAGTCAGCGAGCATATTTTTTGGCATCAATCACCTTCACAGCCGTTTACCC
CTGCTTGTTTAGACCGATTTTGGCGTCCATTTCGCGAGACAATTCATCTTAATGATGTTCGCATTCATGACTTACGCCAC
ACCTACGCCAGTATCGCAGTAAAGTACAATATCAACATCCTCACGATTGGCCGCTTATTAGGGCATGCCTTACCTGAAAC
AACCTTAAAGTACACACACCTTGCTAAACGTGATGTTCAACAGGCGGCAAATGTCGTTTCTCAACTCATTGCAGGGGAGA
TGAAACGATGA

Upstream 100 bases:

>100_bases
TTTTTGCTCAGTGAAATTCAATGCGTTTTTTACGTGTTTTTAGCCCGAAAACGGTTCGAAAACACCTCATGAATGCCACC
TTACTGAACGAGGAAAACCT

Downstream 100 bases:

>100_bases
AAACAGTGAAATTAACACAAGTGTTTATTCGGTCATTAGCCCGTCAAACACGCGCCTATACCATTCAAGACAGTCTCTGT
CATGGCCTTGGCGTTAAAGT

Product: phage integrase family protein

Products: NA

Alternate protein names: Phage Integrase Family Protein; Integrase Family Protein; Integrase; Site-Specific Recombinase Phage Integrase Family Protein; Phage Integrase Family Site Specific Recombinase; Site-Specific Recombinase Phage Integrase Family; Phage-Related Integrase; Phage Related Integrase; Site-Specific Recombinase/Integrase; Tyrosine Type Site-Specific Recombinase; Prophage; Site Specific Recombinase; Prophage Integrase; Integrase Protein; LOW QUALITY PROTEIN Phage Integrase; Tyrosine Recombinase XerC; DNA Integration/Recombination/Invertion Protein; Phage Integrase-Like Protein; Phage Integrase Family Site-Specific Recombinase; Tyrosine Site-Specific Integrase/Recombinase Protein; Phage Integrase Family

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MPSIKLQQSMIDNLPTPQKITVFYDKYFPAFFMRAYPSGIRCYYVRFQYQGLRQLHVIGNANDITLDDARLEARKQIDAL
RYGVVREPAPSLTLCAFAEEFFPRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLL
PLLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSV
KWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEHIFWHQSPSQPFTPACLDRFWRPFRETIHLNDVRIHDLRH
TYASIAVKYNINILTIGRLLGHALPETTLKYTHLAKRDVQQAANVVSQLIAGEMKR

Sequences:

>Translated_376_residues
MPSIKLQQSMIDNLPTPQKITVFYDKYFPAFFMRAYPSGIRCYYVRFQYQGLRQLHVIGNANDITLDDARLEARKQIDAL
RYGVVREPAPSLTLCAFAEEFFPRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLL
PLLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSV
KWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEHIFWHQSPSQPFTPACLDRFWRPFRETIHLNDVRIHDLRH
TYASIAVKYNINILTIGRLLGHALPETTLKYTHLAKRDVQQAANVVSQLIAGEMKR
>Mature_375_residues
PSIKLQQSMIDNLPTPQKITVFYDKYFPAFFMRAYPSGIRCYYVRFQYQGLRQLHVIGNANDITLDDARLEARKQIDALR
YGVVREPAPSLTLCAFAEEFFPRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLP
LLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSVK
WADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEHIFWHQSPSQPFTPACLDRFWRPFRETIHLNDVRIHDLRHT
YASIAVKYNINILTIGRLLGHALPETTLKYTHLAKRDVQQAANVVSQLIAGEMKR

Specific function: Integrase From The Cryptic Lambdoic Prophage Dlp12. Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From Th

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43584; Mature: 43453

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSIKLQQSMIDNLPTPQKITVFYDKYFPAFFMRAYPSGIRCYYVRFQYQGLRQLHVIGN
CCCCHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEECC
ANDITLDDARLEARKQIDALRYGVVREPAPSLTLCAFAEEFFPRYARHWKPSTLLNSQRG
CCCEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCC
FTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLPLLSVMMQQAEVYEYRPAQS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
NPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSV
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
KWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEHIFWHQSPSQPFTPACLDRF
EECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHEEECCCCCCCCCHHHHHHH
WRPFRETIHLNDVRIHDLRHTYASIAVKYNINILTIGRLLGHALPETTLKYTHLAKRDVQ
HHHHHHHCCCCCEEHHHHHHHHHHEEEEEECEEEEHHHHHHHHCCHHHHHHHHHHHHHHH
QAANVVSQLIAGEMKR
HHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PSIKLQQSMIDNLPTPQKITVFYDKYFPAFFMRAYPSGIRCYYVRFQYQGLRQLHVIGN
CCCHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEECC
ANDITLDDARLEARKQIDALRYGVVREPAPSLTLCAFAEEFFPRYARHWKPSTLLNSQRG
CCCEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCC
FTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLPLLSVMMQQAEVYEYRPAQS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
NPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSV
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
KWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEHIFWHQSPSQPFTPACLDRF
EECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHEEECCCCCCCCCHHHHHHH
WRPFRETIHLNDVRIHDLRHTYASIAVKYNINILTIGRLLGHALPETTLKYTHLAKRDVQ
HHHHHHHCCCCCEEHHHHHHHHHHEEEEEECEEEEHHHHHHHHCCHHHHHHHHHHHHHHH
QAANVVSQLIAGEMKR
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA