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The map label for this gene is xerC [H]

Identifier: 126173817

GI number: 126173817

Start: 1843955

End: 1845310

Strand: Reverse

Name: xerC [H]

Synonym: Sbal_1583

Alternate gene names: 126173817

Gene position: 1845310-1843955 (Counterclockwise)

Preceding gene: 126173818

Following gene: 126173816

Centisome position: 35.99

GC content: 45.87

Gene sequence:

>1356_bases
ATGAAAACAGTGAAATTAACACAAGTGTTTATTCGGTCATTAGCCCGTCAAACACGCGCCTATACCATTCAAGACAGTCT
CTGTCATGGCCTTGGCGTTAAAGTGATGCCCGATAAACCGATGCAGTACGTTATTAGCCGCCTTATTGATAATCGGACAC
GTACACGCATTCTTGCGCCTGTTAGTGCGCTAACGGTTAAAGCGGCACGGGAGAAAGCAACAGAACAACTTCAAGCATGG
CGAGAGGAGCACGCTCAGCCGAGCATGAGTGCTTCGCCTCGTTTTGATGTGTTTGTTGAACAAACATGGAAGCCGATGAT
TTTTGACCACTGGAAACCCAGTACAAAACGGTCAGTCTTGCCTGCGCTGAATAGACGCTTGTTAGCTCATTTTGGCCGTT
ACCCGTTGCATATGATTAACCATAAAATGGTGCAAGCATGGTTTGATGAGATTAGTAAAACGCGCAAAGGTGCCGCTAAC
CGTAACCTTGATACATTACAATCCGTCTTCAAGTTAGCATTGAGGCAGGGGCATTGCCTGACTAACCCCTGTATTGGTAT
TCGGCAAAACAAAAGGCGGGTATTAAATCGCTTTTTGAGTGTTGCAGAAATGCAGCGTTTATCTGTGGCGCTTGATGAAT
GTGAAGAGGTCGGCGGCAGTATTGCTCAATGTGCTGATATTTTGCGGCTGTTACTGCTAACAGGTTGCCGATTATCGGAA
ATCACTTTTTTAAAAGGGGAGTACGTTCGCGGCAATGAATTGCATTTACCCGACAGTAAAACGGGGGCAAAAGTGCTTTA
TATTGGTCAAGCCGCAGTTGACATATTAAGTCGCTATCACTGTAAGGCCAATACAGAACTTTTTCCGATGAAACTGGGCG
CTTCCACCTCATTGGTACAGTCGCTATGGCTACGGTTGCGAAAACAGATAGGGATTGAAGATGTGAGATTGCATGATTTA
AGGCATACCTTTGCAAGTTATGCCGTCATGGACGGATGCAGTATTCCGATGGTGGCCTCTTTACTGGGGCATAAAAAAGT
CACAATGACGTTACGATATACCCATGTTGGGGATGATAGCGTAGAGCAAGCCGCTGAGGTTATTGGGGCTGTCTTCAAAG
GCATTTTCACTCAGTCAGAGCCACTCAAACCCTATATACCTCAAACTAATGAGGCTCCCACGCCCGCCGTAAAAGTAAAG
CAAAAGCGTCTGCCAGAAAGAAAACCAACAGCGAAGCCAAAGCCTAAAGCGGTGAAGAAAGTGAAGCAGGTTAAACCATT
ACAGACACCGACCTCTTTAACGAAAGAGGAGCTTCGCGCGATACAACGATTTAGGGACAGTAAGCTATTTTTGTAG

Upstream 100 bases:

>100_bases
CCTTACCTGAAACAACCTTAAAGTACACACACCTTGCTAAACGTGATGTTCAACAGGCGGCAAATGTCGTTTCTCAACTC
ATTGCAGGGGAGATGAAACG

Downstream 100 bases:

>100_bases
AGTTAAACACTGTCGTGGGGCATAAAGTAAACCAATGATCGTGTTAGTGAATCAGACTTACCTAGTCTGGTTCACGCACC
GAATGCCGTCATTTTGCGCT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MKTVKLTQVFIRSLARQTRAYTIQDSLCHGLGVKVMPDKPMQYVISRLIDNRTRTRILAPVSALTVKAAREKATEQLQAW
REEHAQPSMSASPRFDVFVEQTWKPMIFDHWKPSTKRSVLPALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAAN
RNLDTLQSVFKLALRQGHCLTNPCIGIRQNKRRVLNRFLSVAEMQRLSVALDECEEVGGSIAQCADILRLLLLTGCRLSE
ITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVDILSRYHCKANTELFPMKLGASTSLVQSLWLRLRKQIGIEDVRLHDL
RHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGDDSVEQAAEVIGAVFKGIFTQSEPLKPYIPQTNEAPTPAVKVK
QKRLPERKPTAKPKPKAVKKVKQVKPLQTPTSLTKEELRAIQRFRDSKLFL

Sequences:

>Translated_451_residues
MKTVKLTQVFIRSLARQTRAYTIQDSLCHGLGVKVMPDKPMQYVISRLIDNRTRTRILAPVSALTVKAAREKATEQLQAW
REEHAQPSMSASPRFDVFVEQTWKPMIFDHWKPSTKRSVLPALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAAN
RNLDTLQSVFKLALRQGHCLTNPCIGIRQNKRRVLNRFLSVAEMQRLSVALDECEEVGGSIAQCADILRLLLLTGCRLSE
ITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVDILSRYHCKANTELFPMKLGASTSLVQSLWLRLRKQIGIEDVRLHDL
RHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGDDSVEQAAEVIGAVFKGIFTQSEPLKPYIPQTNEAPTPAVKVK
QKRLPERKPTAKPKPKAVKKVKQVKPLQTPTSLTKEELRAIQRFRDSKLFL
>Mature_451_residues
MKTVKLTQVFIRSLARQTRAYTIQDSLCHGLGVKVMPDKPMQYVISRLIDNRTRTRILAPVSALTVKAAREKATEQLQAW
REEHAQPSMSASPRFDVFVEQTWKPMIFDHWKPSTKRSVLPALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAAN
RNLDTLQSVFKLALRQGHCLTNPCIGIRQNKRRVLNRFLSVAEMQRLSVALDECEEVGGSIAQCADILRLLLLTGCRLSE
ITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVDILSRYHCKANTELFPMKLGASTSLVQSLWLRLRKQIGIEDVRLHDL
RHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGDDSVEQAAEVIGAVFKGIFTQSEPLKPYIPQTNEAPTPAVKVK
QKRLPERKPTAKPKPKAVKKVKQVKPLQTPTSLTKEELRAIQRFRDSKLFL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=233, Percent_Identity=27.0386266094421, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 51147; Mature: 51147

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVKLTQVFIRSLARQTRAYTIQDSLCHGLGVKVMPDKPMQYVISRLIDNRTRTRILAP
CCCHHHHHHHHHHHHHHHHCEEHHHHHHHHCCCEECCCCHHHHHHHHHHCCHHHHHHHHH
VSALTVKAAREKATEQLQAWREEHAQPSMSASPRFDVFVEQTWKPMIFDHWKPSTKRSVL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHCCCCCCHHHCCCCCHHHHHH
PALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAANRNLDTLQSVFKLALRQGHCL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
TNPCIGIRQNKRRVLNRFLSVAEMQRLSVALDECEEVGGSIAQCADILRLLLLTGCRLSE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
ITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVDILSRYHCKANTELFPMKLGASTSLVQ
EEEECCCCCCCCEEECCCCCCCCEEEEECHHHHHHHHHHCCCCCCEEEEEECCCHHHHHH
SLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGDDS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEEEEECCCHH
VEQAAEVIGAVFKGIFTQSEPLKPYIPQTNEAPTPAVKVKQKRLPERKPTAKPKPKAVKK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHH
VKQVKPLQTPTSLTKEELRAIQRFRDSKLFL
HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKTVKLTQVFIRSLARQTRAYTIQDSLCHGLGVKVMPDKPMQYVISRLIDNRTRTRILAP
CCCHHHHHHHHHHHHHHHHCEEHHHHHHHHCCCEECCCCHHHHHHHHHHCCHHHHHHHHH
VSALTVKAAREKATEQLQAWREEHAQPSMSASPRFDVFVEQTWKPMIFDHWKPSTKRSVL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHCCCCCCHHHCCCCCHHHHHH
PALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAANRNLDTLQSVFKLALRQGHCL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
TNPCIGIRQNKRRVLNRFLSVAEMQRLSVALDECEEVGGSIAQCADILRLLLLTGCRLSE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
ITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVDILSRYHCKANTELFPMKLGASTSLVQ
EEEECCCCCCCCEEECCCCCCCCEEEEECHHHHHHHHHHCCCCCCEEEEEECCCHHHHHH
SLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGDDS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEEEEECCCHH
VEQAAEVIGAVFKGIFTQSEPLKPYIPQTNEAPTPAVKVKQKRLPERKPTAKPKPKAVKK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHH
VKQVKPLQTPTSLTKEELRAIQRFRDSKLFL
HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA