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The map label for this gene is yclF [H]

Identifier: 126173789

GI number: 126173789

Start: 1808326

End: 1809945

Strand: Reverse

Name: yclF [H]

Synonym: Sbal_1555

Alternate gene names: 126173789

Gene position: 1809945-1808326 (Counterclockwise)

Preceding gene: 126173799

Following gene: 126173782

Centisome position: 35.3

GC content: 49.44

Gene sequence:

>1620_bases
GTGTCAACAGAACAACATCCTCCGCATGCTATGCAAGGCCCACAGGGTTCGCCCCCGCCCGAAATGCTCTTTGGGCATCC
TAAGGGCTTGTTTGTCTGCTTTTTTACCGAAATGTGGGAACGCTTTTCCTTCTACGGAATGAAGGCACTACTGTTTCTTT
ATCTGATTAAATATCATCTGTTTACCGACGAATTTGGCTATAACGTCATTGGCGCATACGGTGCCTTAGTGTACGCCATG
CCCGTGGTGGGAGGTTTATTGGCCGACCGCTATATCGGCATGCGTAAAGCGGTGATCTTCGGTGGTATTTTGTTGGTCCT
CGGCCACTTAGGCATGGCCTTTGAAGGCCATCAAGCGGTTATCGTCGCCGGTGAAGTTCAGCGCGATGAACAAGCACTGC
AGGTGTTCTATTTATCCCTCGCCTTGATCATTGTCGGTGTGGGCTTTTTAAAACCTAACATTTCAACCATAGTCGGTCAG
CTGTATCCCGAGTCATCTCCAAAGCGGGATTCAGGCTTTACCATTTTCTACGCTGGCATCAATTTAGGCGCCACCTTAGC
CCCGCTGATTTGTGCTTATTTAGGCGAAACCTATGGCTGGAAGTACGGCTTTGGTTTGGCAGGTTTAGGCATGTTAGCGG
GGTTGTTGGTGTTTATTCGGGGTAAGAAACACCTGCAAGGTTTCGCCGAACCCAGAGATCCCGCAAGAATTTTAAAGAAA
ACCGCCGGCATCACCACAGAGCAATGGATTTATTTAAGCGCCATCGGCAGCGTAGTGCTGGTCTGGGGCTTAATTCAAAC
CCACTCCCTTGTGCTTTCTATTAGCAGTTTATTACCCGCTGTGAGTCCAGTGATCTGGTTCTTGCACTCAGTATCTCTGG
TGCTCGCCCTCGGGATTGGCTGGTTTATGGTGAAACACTGCAACCCGATTGAACGTCAACAGATGTCGGCCTTACTGCTG
TTCATCGTCGCAGGTTTGGTCTTCTTCGGCTTATATGAGCAAACCTACGGTTCTTGGGTAGCATTTTCGGACCGCGTGAT
GGACCGCAACATGCTCGGCCTCGAATGGAGCGCGGGACAGTTAACCTTCCTCGGCGCCTTCTTTGTGATCAGTTTATCGC
CCATCTTTGCTTGGCTCTGGCCTGCCCTCGCCCGTAAACATTGCGATCCGAGTAAACCAGTTAAAACGGCACTCGGCATT
TTGTTCGCAGGTTTATCCTTTATGGTGCTAGTACTCGGGATCCAAATGCCGCTAAGCAGTGGCTTAGTGAGTATTTGGTT
TTTAGTCGCGGCTTATTTTGTATTAGAAATCGGCGAGTTATTGCTTTCGCCCATTGGGTTATCTGCCGTAACTCAGCTGT
CGGTAAAACGCGTGGTCAGCCTGATGATGGGCGCTTGGTTCCTCGGCACATCATACTCTGAAATCTTAGCCGCCGAATTA
AACAAGCTCGCCGCGATTGATACCCAAGGTGGCGTAATAAGTGACGTACCGAGTGCGATGGCGCTATATGAGCAACTGTT
TATCTTCTCGGCGCAAATTGGCGTGGTAATGGCGTTAGTCTTCTTTGCCCTTGCGCCATTAATGAAGAAAATGATGCACG
AAAAAACAGCGACAAGTTAA

Upstream 100 bases:

>100_bases
GCAATAACCACTAATAATGAAAAATAATTAATAAAATTCATTACGATAAAATGAATCAATCGAAGCTTGGTGCATGAAGC
GCCAGCAATGGGAGTCTTAA

Downstream 100 bases:

>100_bases
GTCTAAGCCCAAGAATTTAAAAGGAAAGGAAACTTGGCTTACTCTCGACCTCTGAGGCGACGGTAAGCCAAGACAATAAG
ATGTAAAGCCAATAACCCCG

Product: amino acid/peptide transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 538

Protein sequence:

>539_residues
MSTEQHPPHAMQGPQGSPPPEMLFGHPKGLFVCFFTEMWERFSFYGMKALLFLYLIKYHLFTDEFGYNVIGAYGALVYAM
PVVGGLLADRYIGMRKAVIFGGILLVLGHLGMAFEGHQAVIVAGEVQRDEQALQVFYLSLALIIVGVGFLKPNISTIVGQ
LYPESSPKRDSGFTIFYAGINLGATLAPLICAYLGETYGWKYGFGLAGLGMLAGLLVFIRGKKHLQGFAEPRDPARILKK
TAGITTEQWIYLSAIGSVVLVWGLIQTHSLVLSISSLLPAVSPVIWFLHSVSLVLALGIGWFMVKHCNPIERQQMSALLL
FIVAGLVFFGLYEQTYGSWVAFSDRVMDRNMLGLEWSAGQLTFLGAFFVISLSPIFAWLWPALARKHCDPSKPVKTALGI
LFAGLSFMVLVLGIQMPLSSGLVSIWFLVAAYFVLEIGELLLSPIGLSAVTQLSVKRVVSLMMGAWFLGTSYSEILAAEL
NKLAAIDTQGGVISDVPSAMALYEQLFIFSAQIGVVMALVFFALAPLMKKMMHEKTATS

Sequences:

>Translated_539_residues
MSTEQHPPHAMQGPQGSPPPEMLFGHPKGLFVCFFTEMWERFSFYGMKALLFLYLIKYHLFTDEFGYNVIGAYGALVYAM
PVVGGLLADRYIGMRKAVIFGGILLVLGHLGMAFEGHQAVIVAGEVQRDEQALQVFYLSLALIIVGVGFLKPNISTIVGQ
LYPESSPKRDSGFTIFYAGINLGATLAPLICAYLGETYGWKYGFGLAGLGMLAGLLVFIRGKKHLQGFAEPRDPARILKK
TAGITTEQWIYLSAIGSVVLVWGLIQTHSLVLSISSLLPAVSPVIWFLHSVSLVLALGIGWFMVKHCNPIERQQMSALLL
FIVAGLVFFGLYEQTYGSWVAFSDRVMDRNMLGLEWSAGQLTFLGAFFVISLSPIFAWLWPALARKHCDPSKPVKTALGI
LFAGLSFMVLVLGIQMPLSSGLVSIWFLVAAYFVLEIGELLLSPIGLSAVTQLSVKRVVSLMMGAWFLGTSYSEILAAEL
NKLAAIDTQGGVISDVPSAMALYEQLFIFSAQIGVVMALVFFALAPLMKKMMHEKTATS
>Mature_538_residues
STEQHPPHAMQGPQGSPPPEMLFGHPKGLFVCFFTEMWERFSFYGMKALLFLYLIKYHLFTDEFGYNVIGAYGALVYAMP
VVGGLLADRYIGMRKAVIFGGILLVLGHLGMAFEGHQAVIVAGEVQRDEQALQVFYLSLALIIVGVGFLKPNISTIVGQL
YPESSPKRDSGFTIFYAGINLGATLAPLICAYLGETYGWKYGFGLAGLGMLAGLLVFIRGKKHLQGFAEPRDPARILKKT
AGITTEQWIYLSAIGSVVLVWGLIQTHSLVLSISSLLPAVSPVIWFLHSVSLVLALGIGWFMVKHCNPIERQQMSALLLF
IVAGLVFFGLYEQTYGSWVAFSDRVMDRNMLGLEWSAGQLTFLGAFFVISLSPIFAWLWPALARKHCDPSKPVKTALGIL
FAGLSFMVLVLGIQMPLSSGLVSIWFLVAAYFVLEIGELLLSPIGLSAVTQLSVKRVVSLMMGAWFLGTSYSEILAAELN
KLAAIDTQGGVISDVPSAMALYEQLFIFSAQIGVVMALVFFALAPLMKKMMHEKTATS

Specific function: Unknown

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Homo sapiens, GI4827008, Length=415, Percent_Identity=24.0963855421687, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI226371746, Length=206, Percent_Identity=29.6116504854369, Blast_Score=89, Evalue=7e-18,
Organism=Escherichia coli, GI1786927, Length=496, Percent_Identity=27.4193548387097, Blast_Score=206, Evalue=4e-54,
Organism=Escherichia coli, GI1790572, Length=484, Percent_Identity=30.3719008264463, Blast_Score=204, Evalue=8e-54,
Organism=Escherichia coli, GI1787922, Length=523, Percent_Identity=26.9598470363289, Blast_Score=201, Evalue=7e-53,
Organism=Escherichia coli, GI1789911, Length=529, Percent_Identity=25.3308128544423, Blast_Score=180, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI17541704, Length=391, Percent_Identity=24.5524296675192, Blast_Score=81, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71987453, Length=409, Percent_Identity=25.4278728606357, Blast_Score=79, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17569141, Length=212, Percent_Identity=27.3584905660377, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24639583, Length=395, Percent_Identity=24.3037974683544, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24639585, Length=401, Percent_Identity=24.6882793017456, Blast_Score=92, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24639581, Length=378, Percent_Identity=24.6031746031746, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI28571098, Length=404, Percent_Identity=24.009900990099, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI28571102, Length=404, Percent_Identity=24.009900990099, Blast_Score=79, Evalue=7e-15,
Organism=Drosophila melanogaster, GI28571100, Length=404, Percent_Identity=24.009900990099, Blast_Score=79, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 58931; Mature: 58800

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: PS50850 MFS ; PS01022 PTR2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEQHPPHAMQGPQGSPPPEMLFGHPKGLFVCFFTEMWERFSFYGMKALLFLYLIKYHL
CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTDEFGYNVIGAYGALVYAMPVVGGLLADRYIGMRKAVIFGGILLVLGHLGMAFEGHQAV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
IVAGEVQRDEQALQVFYLSLALIIVGVGFLKPNISTIVGQLYPESSPKRDSGFTIFYAGI
EEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEEEEECC
NLGATLAPLICAYLGETYGWKYGFGLAGLGMLAGLLVFIRGKKHLQGFAEPRDPARILKK
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHH
TAGITTEQWIYLSAIGSVVLVWGLIQTHSLVLSISSLLPAVSPVIWFLHSVSLVLALGIG
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFMVKHCNPIERQQMSALLLFIVAGLVFFGLYEQTYGSWVAFSDRVMDRNMLGLEWSAGQ
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEECCCC
LTFLGAFFVISLSPIFAWLWPALARKHCDPSKPVKTALGILFAGLSFMVLVLGIQMPLSS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
GLVSIWFLVAAYFVLEIGELLLSPIGLSAVTQLSVKRVVSLMMGAWFLGTSYSEILAAEL
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
NKLAAIDTQGGVISDVPSAMALYEQLFIFSAQIGVVMALVFFALAPLMKKMMHEKTATS
HHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STEQHPPHAMQGPQGSPPPEMLFGHPKGLFVCFFTEMWERFSFYGMKALLFLYLIKYHL
CCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTDEFGYNVIGAYGALVYAMPVVGGLLADRYIGMRKAVIFGGILLVLGHLGMAFEGHQAV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
IVAGEVQRDEQALQVFYLSLALIIVGVGFLKPNISTIVGQLYPESSPKRDSGFTIFYAGI
EEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEEEEECC
NLGATLAPLICAYLGETYGWKYGFGLAGLGMLAGLLVFIRGKKHLQGFAEPRDPARILKK
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHH
TAGITTEQWIYLSAIGSVVLVWGLIQTHSLVLSISSLLPAVSPVIWFLHSVSLVLALGIG
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFMVKHCNPIERQQMSALLLFIVAGLVFFGLYEQTYGSWVAFSDRVMDRNMLGLEWSAGQ
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEECCCC
LTFLGAFFVISLSPIFAWLWPALARKHCDPSKPVKTALGILFAGLSFMVLVLGIQMPLSS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
GLVSIWFLVAAYFVLEIGELLLSPIGLSAVTQLSVKRVVSLMMGAWFLGTSYSEILAAEL
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
NKLAAIDTQGGVISDVPSAMALYEQLFIFSAQIGVVMALVFFALAPLMKKMMHEKTATS
HHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]