Click here to switch to the map view.

The map label for this gene is cspG [H]

Identifier: 126173707

GI number: 126173707

Start: 1706231

End: 1706440

Strand: Reverse

Name: cspG [H]

Synonym: Sbal_1469

Alternate gene names: 126173707

Gene position: 1706440-1706231 (Counterclockwise)

Preceding gene: 126173716

Following gene: 126173705

Centisome position: 33.28

GC content: 39.05

Gene sequence:

>210_bases
ATGTCTAAAACTACTGGTGTAGTTAAATGGTTTAACGAAGATAAAGGTTTTGGTTTTATTTCTCCTGACAATGGTGGCGC
TGACGCATTCGTTCATTTCCGCGCAATCGTTTCAGAAGGCTTTAAAACTCTTGCTGAAGGTCAAAAAGTTTCTTTTGATA
TCGAACAAGGCCAAAAAGGTCCTCAAGCTGGGAACGTAGTTATTCTGTAA

Upstream 100 bases:

>100_bases
AGCTTTCCACTCATAACTTATCATCAATGTAAATAATTCTATTTCTGGCTAACATCCCGCATAATTGCGAATTATTTGTT
TGAAAATTTTGGAGACATTC

Downstream 100 bases:

>100_bases
TTAGACTTTGTCTAATTTAAGTTAACAAATTCCAGACAAAAATGCCGACATTATGTCGGCATTTTTATATCTGCGTTTTC
ATCCATCACTCACGCTGACC

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSKTTGVVKWFNEDKGFGFISPDNGGADAFVHFRAIVSEGFKTLAEGQKVSFDIEQGQKGPQAGNVVIL

Sequences:

>Translated_69_residues
MSKTTGVVKWFNEDKGFGFISPDNGGADAFVHFRAIVSEGFKTLAEGQKVSFDIEQGQKGPQAGNVVIL
>Mature_68_residues
SKTTGVVKWFNEDKGFGFISPDNGGADAFVHFRAIVSEGFKTLAEGQKVSFDIEQGQKGPQAGNVVIL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=68, Percent_Identity=67.6470588235294, Blast_Score=99, Evalue=8e-23,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=68.6567164179104, Blast_Score=98, Evalue=8e-23,
Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=65.2173913043478, Blast_Score=96, Evalue=4e-22,
Organism=Escherichia coli, GI1787839, Length=67, Percent_Identity=64.1791044776119, Blast_Score=93, Evalue=3e-21,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=63.768115942029, Blast_Score=91, Evalue=2e-20,
Organism=Escherichia coli, GI1787834, Length=68, Percent_Identity=61.7647058823529, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=53.2258064516129, Blast_Score=73, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7404; Mature: 7273

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTTGVVKWFNEDKGFGFISPDNGGADAFVHFRAIVSEGFKTLAEGQKVSFDIEQGQKG
CCCCCCEEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
PQAGNVVIL
CCCCCEEEC
>Mature Secondary Structure 
SKTTGVVKWFNEDKGFGFISPDNGGADAFVHFRAIVSEGFKTLAEGQKVSFDIEQGQKG
CCCCCEEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
PQAGNVVIL
CCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10483731 [H]