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The map label for this gene is ygdH [H]

Identifier: 126173610

GI number: 126173610

Start: 1573325

End: 1574680

Strand: Reverse

Name: ygdH [H]

Synonym: Sbal_1372

Alternate gene names: 126173610

Gene position: 1574680-1573325 (Counterclockwise)

Preceding gene: 126173611

Following gene: 126173609

Centisome position: 30.71

GC content: 47.42

Gene sequence:

>1356_bases
ATGATAGTAAAAGTCAGCCCTAAAGGCAGCATGGATCAGCTTTCGCAACTTGAAGTTGATCGTCTCAAAAAAAGTGCCAA
AAGCACACTATATCAACTGTACCGCAACTGCTCCTTAGCAGTACTTGCCGCGGGTTTAAAAACCGACAACTCTAAAGCCC
TATTCGAGCAATACCATGATTTCGACATCCACGTCCTACAACGGGAACGCGGTGTTAAATTAGAACTGGTCAATCCCCCT
GAACAAGCCTTTGTCGATGGCCAAATAATCACCGGCATTCAAGAACATCTGTTCTCAGTCTTACGCGACATCCTCTATAT
CAGCGACAGATACGACTCGCTCAAACACATTAATCTGACCAACGCCCACCATATCACCAATGTGGTGTTTGATATTTTAC
GTAACGCGCGGGCGATTGCCCCCATGAAAGACCCGAACGTCGTGGTCTGTTGGGGCGGGCACTGTATTAATGCCATCGAA
TACCAATATACCCGCGAGGTAGGTTATCAACTTGGCCTGAGGGAATTGGACATTTGTACTGGCTGTGGTCCTGGCGCGAT
GGAAGGCCCGATGAAAGGTGCGGCCATAGGCCATGCCAAACAAAGGATTAAAAATGCCCGTTATATTGGTTTGACTGAGC
CGAGTATTATTGCCGCCGAGCCACCGAATCAAATCGTCAATGAACTGGTGATCTTGCCCGATATTGAAAAACGTCTCGAA
GCCTTCGTGCGTTTAGGTCACGGCATTATTATCTTCCCAGGTGGTGCTGGCACGGCGGAAGAGTTGCTCTATATCTTAGG
TATCTTACTCAACGAAGAAAACCAAGAAACCCCTTTCCCGCTGATCCTCACAGGCCCCACGGAAAGCGCCGATTACTTCA
TTAAGATTGATGAGTTTATTGCCTCAACCTTGGGCCCAGAAGCTCAGAAGAAGTATCAAATCATCATAGATAATCCCACT
GAAGTGGCGCGTATCATGAAGAAAAGCATGGAGCAAGTGAAAGCCTATCGCCGCTCAACGGGTGATGCTTACCAATATCA
GTGGGCACTGAAGATTGAATCTGAATTCCAGTTACCTTTTGTCCCGAGCCACGAGGTGATGGCAAACTTGGATTTGCACT
TCCAAACCAATAAAGCCGAGCTTGCCGCCAACCTGCGCAAAGCGTTTTCGGGTATAGTGGCGGGTAACGTCAAGTCGGAA
ACAATCAAGCACATAGAGCGCGATGGTCCCTTCCAATTGAAAGGCGATCCTAAACTCATGGACATGATGGATAAGCTCTT
GAGTGCATTTGTGCAACAACAGAGAATGAAGCTTCCCGGAAGCGCTTATATTCCTTGCTACCAAATAGTGAAATAG

Upstream 100 bases:

>100_bases
AAGCGAAACATGAAAGCAGAGACAGGGTTGTGATTGACGTATAATTGAGCCCCACTATACGCCTCCTCTAATCACTCCTG
TCATGACGAAGGAGTGATAA

Downstream 100 bases:

>100_bases
AGAGCGAAACAACGACACCCCATGAACAAGTTTTTAATCATCGATGGTCTCAACTTGGTTCGCCGCATCTACGCGGCGAT
CCCCGATGAAACAGATATGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MIVKVSPKGSMDQLSQLEVDRLKKSAKSTLYQLYRNCSLAVLAAGLKTDNSKALFEQYHDFDIHVLQRERGVKLELVNPP
EQAFVDGQIITGIQEHLFSVLRDILYISDRYDSLKHINLTNAHHITNVVFDILRNARAIAPMKDPNVVVCWGGHCINAIE
YQYTREVGYQLGLRELDICTGCGPGAMEGPMKGAAIGHAKQRIKNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE
AFVRLGHGIIIFPGGAGTAEELLYILGILLNEENQETPFPLILTGPTESADYFIKIDEFIASTLGPEAQKKYQIIIDNPT
EVARIMKKSMEQVKAYRRSTGDAYQYQWALKIESEFQLPFVPSHEVMANLDLHFQTNKAELAANLRKAFSGIVAGNVKSE
TIKHIERDGPFQLKGDPKLMDMMDKLLSAFVQQQRMKLPGSAYIPCYQIVK

Sequences:

>Translated_451_residues
MIVKVSPKGSMDQLSQLEVDRLKKSAKSTLYQLYRNCSLAVLAAGLKTDNSKALFEQYHDFDIHVLQRERGVKLELVNPP
EQAFVDGQIITGIQEHLFSVLRDILYISDRYDSLKHINLTNAHHITNVVFDILRNARAIAPMKDPNVVVCWGGHCINAIE
YQYTREVGYQLGLRELDICTGCGPGAMEGPMKGAAIGHAKQRIKNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE
AFVRLGHGIIIFPGGAGTAEELLYILGILLNEENQETPFPLILTGPTESADYFIKIDEFIASTLGPEAQKKYQIIIDNPT
EVARIMKKSMEQVKAYRRSTGDAYQYQWALKIESEFQLPFVPSHEVMANLDLHFQTNKAELAANLRKAFSGIVAGNVKSE
TIKHIERDGPFQLKGDPKLMDMMDKLLSAFVQQQRMKLPGSAYIPCYQIVK
>Mature_451_residues
MIVKVSPKGSMDQLSQLEVDRLKKSAKSTLYQLYRNCSLAVLAAGLKTDNSKALFEQYHDFDIHVLQRERGVKLELVNPP
EQAFVDGQIITGIQEHLFSVLRDILYISDRYDSLKHINLTNAHHITNVVFDILRNARAIAPMKDPNVVVCWGGHCINAIE
YQYTREVGYQLGLRELDICTGCGPGAMEGPMKGAAIGHAKQRIKNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE
AFVRLGHGIIIFPGGAGTAEELLYILGILLNEENQETPFPLILTGPTESADYFIKIDEFIASTLGPEAQKKYQIIIDNPT
EVARIMKKSMEQVKAYRRSTGDAYQYQWALKIESEFQLPFVPSHEVMANLDLHFQTNKAELAANLRKAFSGIVAGNVKSE
TIKHIERDGPFQLKGDPKLMDMMDKLLSAFVQQQRMKLPGSAYIPCYQIVK

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=452, Percent_Identity=64.6017699115044, Blast_Score=608, Evalue=1e-175,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 50594; Mature: 50594

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVKVSPKGSMDQLSQLEVDRLKKSAKSTLYQLYRNCSLAVLAAGLKTDNSKALFEQYHD
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCC
FDIHVLQRERGVKLELVNPPEQAFVDGQIITGIQEHLFSVLRDILYISDRYDSLKHINLT
CCEEEEECCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHEECCC
NAHHITNVVFDILRNARAIAPMKDPNVVVCWGGHCINAIEYQYTREVGYQLGLRELDICT
CHHHHHHHHHHHHHCCCEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHCC
GCGPGAMEGPMKGAAIGHAKQRIKNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE
CCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCHHHHHHHEEECCCHHHHHH
AFVRLGHGIIIFPGGAGTAEELLYILGILLNEENQETPFPLILTGPTESADYFIKIDEFI
HHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEEEHHHH
ASTLGPEAQKKYQIIIDNPTEVARIMKKSMEQVKAYRRSTGDAYQYQWALKIESEFQLPF
HHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCC
VPSHEVMANLDLHFQTNKAELAANLRKAFSGIVAGNVKSETIKHIERDGPFQLKGDPKLM
CCCHHHHEEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECCCCHHH
DMMDKLLSAFVQQQRMKLPGSAYIPCYQIVK
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC
>Mature Secondary Structure
MIVKVSPKGSMDQLSQLEVDRLKKSAKSTLYQLYRNCSLAVLAAGLKTDNSKALFEQYHD
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCC
FDIHVLQRERGVKLELVNPPEQAFVDGQIITGIQEHLFSVLRDILYISDRYDSLKHINLT
CCEEEEECCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHEECCC
NAHHITNVVFDILRNARAIAPMKDPNVVVCWGGHCINAIEYQYTREVGYQLGLRELDICT
CHHHHHHHHHHHHHCCCEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHCC
GCGPGAMEGPMKGAAIGHAKQRIKNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE
CCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCHHHHHHHEEECCCHHHHHH
AFVRLGHGIIIFPGGAGTAEELLYILGILLNEENQETPFPLILTGPTESADYFIKIDEFI
HHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEEEHHHH
ASTLGPEAQKKYQIIIDNPTEVARIMKKSMEQVKAYRRSTGDAYQYQWALKIESEFQLPF
HHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCC
VPSHEVMANLDLHFQTNKAELAANLRKAFSGIVAGNVKSETIKHIERDGPFQLKGDPKLM
CCCHHHHEEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECCCCHHH
DMMDKLLSAFVQQQRMKLPGSAYIPCYQIVK
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]