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The map label for this gene is xni [H]

Identifier: 126173609

GI number: 126173609

Start: 1572515

End: 1573303

Strand: Reverse

Name: xni [H]

Synonym: Sbal_1371

Alternate gene names: 126173609

Gene position: 1573303-1572515 (Counterclockwise)

Preceding gene: 126173610

Following gene: 126173608

Centisome position: 30.68

GC content: 49.05

Gene sequence:

>789_bases
ATGAACAAGTTTTTAATCATCGATGGTCTCAACTTGGTTCGCCGCATCTACGCGGCGATCCCCGATGAAACAGATATGCA
AAGCCTCACAGAGCGCGTCATTTCGGCGTGCACTAAACTGCTGCGGGTGCATCGCCCTACCCATGTGGCTATCGTGTGGG
ACGGTCATGAGATCTCATGGCGTAAACAGCTTTATCCCGATTACAAAAAAGGTCGTAAACCTATGCCAGAACCACTGGCG
CAGGGTTTAGTTGCGCTGCAAGACCATTTAACCGCAATGCACATTGGCTCTATTTATGCCGCTGCGGAGGCCGATGATGT
GATTGCGACACTGGCGATAAAAACCGCCAAAGCGCAAGGTGAAGCCATTATTGTGTCCACCGACAAAGGTTTTAGTCAGC
TTAATCATCGCCATATCAGTCAATGGGATCACTTTAATCAGCAGTACCTCGATATTGCGGCACTGGAACAGAAACTTGGC
GTTGAGCGCAGCCAATTTCTCGACTTGATGGCATTAGCGGGCGACAGCGGTAATAAAATTCCTGGTATTGCGGGCATAGG
CCCTAAGTCGGCCGCCGAGTTATTGAAAACCTTTAGAAGCTTACCGACCTTGTTTTCATCCTTATCCAACCTAGGCGCTA
AGCAAGCGAAGAAGCTCGCCGAGGGCAAAGAGATGGCGAGGCTGAGTTATAAGCTGGCGCAGTTACAAACGGACCTACCA
CTCAATATCAACTTGAAAGACTTTCGCGTGATTGACTCCCCACCTGAAAAAACCATCAATCAAGACTAA

Upstream 100 bases:

>100_bases
CTTGAGTGCATTTGTGCAACAACAGAGAATGAAGCTTCCCGGAAGCGCTTATATTCCTTGCTACCAAATAGTGAAATAGA
GAGCGAAACAACGACACCCC

Downstream 100 bases:

>100_bases
ACTTCTGTTAACACAAAGTTGCAATTAACGCATTTACCTTAGCGCAACAAAAGCGTATTTTATGGACGTGCTCAAGTGAC
TCATTTAATGAGGTAAAGGA

Product: exonuclease IX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MNKFLIIDGLNLVRRIYAAIPDETDMQSLTERVISACTKLLRVHRPTHVAIVWDGHEISWRKQLYPDYKKGRKPMPEPLA
QGLVALQDHLTAMHIGSIYAAAEADDVIATLAIKTAKAQGEAIIVSTDKGFSQLNHRHISQWDHFNQQYLDIAALEQKLG
VERSQFLDLMALAGDSGNKIPGIAGIGPKSAAELLKTFRSLPTLFSSLSNLGAKQAKKLAEGKEMARLSYKLAQLQTDLP
LNINLKDFRVIDSPPEKTINQD

Sequences:

>Translated_262_residues
MNKFLIIDGLNLVRRIYAAIPDETDMQSLTERVISACTKLLRVHRPTHVAIVWDGHEISWRKQLYPDYKKGRKPMPEPLA
QGLVALQDHLTAMHIGSIYAAAEADDVIATLAIKTAKAQGEAIIVSTDKGFSQLNHRHISQWDHFNQQYLDIAALEQKLG
VERSQFLDLMALAGDSGNKIPGIAGIGPKSAAELLKTFRSLPTLFSSLSNLGAKQAKKLAEGKEMARLSYKLAQLQTDLP
LNINLKDFRVIDSPPEKTINQD
>Mature_262_residues
MNKFLIIDGLNLVRRIYAAIPDETDMQSLTERVISACTKLLRVHRPTHVAIVWDGHEISWRKQLYPDYKKGRKPMPEPLA
QGLVALQDHLTAMHIGSIYAAAEADDVIATLAIKTAKAQGEAIIVSTDKGFSQLNHRHISQWDHFNQQYLDIAALEQKLG
VERSQFLDLMALAGDSGNKIPGIAGIGPKSAAELLKTFRSLPTLFSSLSNLGAKQAKKLAEGKEMARLSYKLAQLQTDLP
LNINLKDFRVIDSPPEKTINQD

Specific function: May have a role in processing of nucleic acids. It is probably not an exonuclease; metal-binding residues found in paralogs are missing [H]

COG id: COG0258

COG function: function code L; 5'-3' exonuclease (including N-terminal domain of PolI)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 5'-3' exonuclease domain [H]

Homologues:

Organism=Escherichia coli, GI226510970, Length=251, Percent_Identity=40.6374501992032, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1790294, Length=261, Percent_Identity=33.3333333333333, Blast_Score=130, Evalue=7e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020046
- InterPro:   IPR020045
- InterPro:   IPR020047
- InterPro:   IPR008918
- InterPro:   IPR022895 [H]

Pfam domain/function: PF01367 5_3_exonuc; PF02739 5_3_exonuc_N [H]

EC number: 3.1.11.- [C]

Molecular weight: Translated: 29073; Mature: 29073

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKFLIIDGLNLVRRIYAAIPDETDMQSLTERVISACTKLLRVHRPTHVAIVWDGHEISW
CCCEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH
RKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSIYAAAEADDVIATLAIKTAKAQG
HHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
EAIIVSTDKGFSQLNHRHISQWDHFNQQYLDIAALEQKLGVERSQFLDLMALAGDSGNKI
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
PGIAGIGPKSAAELLKTFRSLPTLFSSLSNLGAKQAKKLAEGKEMARLSYKLAQLQTDLP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LNINLKDFRVIDSPPEKTINQD
CCCCHHHEEEECCCCCCCCCCC
>Mature Secondary Structure
MNKFLIIDGLNLVRRIYAAIPDETDMQSLTERVISACTKLLRVHRPTHVAIVWDGHEISW
CCCEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH
RKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSIYAAAEADDVIATLAIKTAKAQG
HHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
EAIIVSTDKGFSQLNHRHISQWDHFNQQYLDIAALEQKLGVERSQFLDLMALAGDSGNKI
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
PGIAGIGPKSAAELLKTFRSLPTLFSSLSNLGAKQAKKLAEGKEMARLSYKLAQLQTDLP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LNINLKDFRVIDSPPEKTINQD
CCCCHHHEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA