Click here to switch to the map view.

The map label for this gene is ydiF [H]

Identifier: 125624316

GI number: 125624316

Start: 1484827

End: 1486734

Strand: Reverse

Name: ydiF [H]

Synonym: llmg_1512

Alternate gene names: 125624316

Gene position: 1486734-1484827 (Counterclockwise)

Preceding gene: 125624317

Following gene: 125624315

Centisome position: 58.78

GC content: 38.16

Gene sequence:

>1908_bases
ATGATTTTATTGCAAGGAAATGGAATCGCACGAACTTTTGGTGGCGATGTCTTATTTGAAAACATTAGTTTCAGCCTACA
AGACCAATCAAGAATAGCTTTAGTTGGACGAAACGGTGCTGGTAAATCAACTTTGCTTAAAATTATTGCTGGGGTTGAAG
AAGCAAGTCGTGGAACCATTTCAAAAACAAAAGACTTAAGCATGAATTATTTGGCTCAGGATACTGGCTTAAATTCGCAA
AGGACAATTTTTGCCGAAATGTTGTCTGTTTTTGACCAGCTTCGTCAAATGGAAAAGCAATTGCGTCAAATGGAACTGCA
AATGGGAGAACTTGGCGCTGATGAATTGACGCTTTTAATGAAGCGCTATGATTCATTGTCAGAAGAATTTCGCATGAAAA
ACGGCTTTACTTATGAGTCTGAAATTAAGTCAGTTTTAAATGGTTTTCGTTTTGATGAGTCGATGTGGGAACGTGAAATT
TCAAGTTTATCAGGTGGACAAAAAACGCGTTTAGCCCTAGCGAAAATGCTTTTAGAAAAACCACAGCTGTTGATTTTGGA
CGAACCAACTAACCACTTGGATATTGAAACTTTAGCTTGGCTTGAAAATTATCTTAAAAATTATGATGGTAGTTTACTGA
TTGTCAGCCATGACCGTTACTTTTTGGATAAGGTAGTCAATGAAGTTTTAGAGTTATCAAGAGGCGAGTTGACTCGTTTT
TCTGGTAATTACTCACGTTATGTCGAACAAAGGGAGCAAAAACTTCTATTAGAACTTAAAAACTTTGAAAAGCAACAAAA
AGAAATTGCAAAATTAGAAGACTATGTTGCCAAAAATCTAGTGCGTGCTTCAACAACCAAAATGGCACAATCGCGTCGCA
AAAAATTAGAAAAAATGGATCGACTGGATGCACCAACGAGCGATGACAAATCAGCTCATGTTACTTTCACCCCGGAAAAA
ACCTCAGGAAATGTTGTCCTGACCGTGTCAGAGGCTACGGTAGGCTATTCAGACAATCGTCTATCTGGACCAATCAATAT
TGATGAACGCAAAGGGGAGTCTTTGGCTATTGTTGGGCCAAACGGTGTGGGTAAAACGACCTTAATCAAATCCATTGTCG
GTCAAATCCCTTTTTTGGCTGGTCAAGCAAAACTGGGTGCCAATGTTACCTTGGGATATTATGATCAAGAACAAGGGCGC
TTGACGACTTCAAATACCGTTTTGGACGAATTGTGGAATGAACATCGCCTGCTTAATGAAGTGGAAATTCGCAACATGTT
AGGAGCCTTTCTTTTTAGCGGTGATGATGTCAAGAAAACAGTGGGAATGCTCTCTGGTGGGGAAAAAGCGCGTCTTTTAC
TCGCAAAATTAGCAATGAATCATGATAATTTCTTAGTCTTAGATGAACCTACGAACCATTTGGATATTGACTCACGGGAA
GTTTTAGAAAATGCTTTAATTGATTTTCCTGGAACAATCTTGTTTGTTTCCCATGACCGTTACTTTATTAATCGTGTAGC
GACAAAAGTTTTAGAAATCGCTCCAGAGGGAAGTACAGAATTTTTGGGCGATTACGACTATTATGTTGAGAAAAAAGAAG
AACAGTTGGCCCAGACTGATGAATCAGACAATGGGGGACTTGTAGAAAGTCTTGCTCAACAAGATTTTACGGCTCAGAAA
GAAGCACAAAAAAATCGTCGAAAAGTGGAGCGAGAAATTACTTCTTGTGAGGAAAAACTAGCAGAGTTAGAAATAAAAAT
TGAAACACTTATGCTTCAAATGCAAGAAAATACTTCTGATTTTGTGAAATTAGGTGAATTACAAGCCGAAATTGACCTGC
TTAATGATGAAAAAGACGAGACAGAGATGACTCTTTTAGAAGCAATGGAAGAATTAGAAAGTTTGTAA

Upstream 100 bases:

>100_bases
TCGTTTAAATGCTATAATAGAAGGACTGCTTTTTCTATGAAATATAAGAAAAAAATCAGGGATAAAAAGGTTTAAGATTT
AACGAAGAGGATTAATAATA

Downstream 100 bases:

>100_bases
GCATAATAGAATATTGAGGAAAAGAATAGTGTTTCTATTCTTTTTTTCTAGGCTAAAAAAGAAATTTTGAAAAAACTAAG
ACTTGCAAATCTCTCTTAAG

Product: putative ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 635; Mature: 635

Protein sequence:

>635_residues
MILLQGNGIARTFGGDVLFENISFSLQDQSRIALVGRNGAGKSTLLKIIAGVEEASRGTISKTKDLSMNYLAQDTGLNSQ
RTIFAEMLSVFDQLRQMEKQLRQMELQMGELGADELTLLMKRYDSLSEEFRMKNGFTYESEIKSVLNGFRFDESMWEREI
SSLSGGQKTRLALAKMLLEKPQLLILDEPTNHLDIETLAWLENYLKNYDGSLLIVSHDRYFLDKVVNEVLELSRGELTRF
SGNYSRYVEQREQKLLLELKNFEKQQKEIAKLEDYVAKNLVRASTTKMAQSRRKKLEKMDRLDAPTSDDKSAHVTFTPEK
TSGNVVLTVSEATVGYSDNRLSGPINIDERKGESLAIVGPNGVGKTTLIKSIVGQIPFLAGQAKLGANVTLGYYDQEQGR
LTTSNTVLDELWNEHRLLNEVEIRNMLGAFLFSGDDVKKTVGMLSGGEKARLLLAKLAMNHDNFLVLDEPTNHLDIDSRE
VLENALIDFPGTILFVSHDRYFINRVATKVLEIAPEGSTEFLGDYDYYVEKKEEQLAQTDESDNGGLVESLAQQDFTAQK
EAQKNRRKVEREITSCEEKLAELEIKIETLMLQMQENTSDFVKLGELQAEIDLLNDEKDETEMTLLEAMEELESL

Sequences:

>Translated_635_residues
MILLQGNGIARTFGGDVLFENISFSLQDQSRIALVGRNGAGKSTLLKIIAGVEEASRGTISKTKDLSMNYLAQDTGLNSQ
RTIFAEMLSVFDQLRQMEKQLRQMELQMGELGADELTLLMKRYDSLSEEFRMKNGFTYESEIKSVLNGFRFDESMWEREI
SSLSGGQKTRLALAKMLLEKPQLLILDEPTNHLDIETLAWLENYLKNYDGSLLIVSHDRYFLDKVVNEVLELSRGELTRF
SGNYSRYVEQREQKLLLELKNFEKQQKEIAKLEDYVAKNLVRASTTKMAQSRRKKLEKMDRLDAPTSDDKSAHVTFTPEK
TSGNVVLTVSEATVGYSDNRLSGPINIDERKGESLAIVGPNGVGKTTLIKSIVGQIPFLAGQAKLGANVTLGYYDQEQGR
LTTSNTVLDELWNEHRLLNEVEIRNMLGAFLFSGDDVKKTVGMLSGGEKARLLLAKLAMNHDNFLVLDEPTNHLDIDSRE
VLENALIDFPGTILFVSHDRYFINRVATKVLEIAPEGSTEFLGDYDYYVEKKEEQLAQTDESDNGGLVESLAQQDFTAQK
EAQKNRRKVEREITSCEEKLAELEIKIETLMLQMQENTSDFVKLGELQAEIDLLNDEKDETEMTLLEAMEELESL
>Mature_635_residues
MILLQGNGIARTFGGDVLFENISFSLQDQSRIALVGRNGAGKSTLLKIIAGVEEASRGTISKTKDLSMNYLAQDTGLNSQ
RTIFAEMLSVFDQLRQMEKQLRQMELQMGELGADELTLLMKRYDSLSEEFRMKNGFTYESEIKSVLNGFRFDESMWEREI
SSLSGGQKTRLALAKMLLEKPQLLILDEPTNHLDIETLAWLENYLKNYDGSLLIVSHDRYFLDKVVNEVLELSRGELTRF
SGNYSRYVEQREQKLLLELKNFEKQQKEIAKLEDYVAKNLVRASTTKMAQSRRKKLEKMDRLDAPTSDDKSAHVTFTPEK
TSGNVVLTVSEATVGYSDNRLSGPINIDERKGESLAIVGPNGVGKTTLIKSIVGQIPFLAGQAKLGANVTLGYYDQEQGR
LTTSNTVLDELWNEHRLLNEVEIRNMLGAFLFSGDDVKKTVGMLSGGEKARLLLAKLAMNHDNFLVLDEPTNHLDIDSRE
VLENALIDFPGTILFVSHDRYFINRVATKVLEIAPEGSTEFLGDYDYYVEKKEEQLAQTDESDNGGLVESLAQQDFTAQK
EAQKNRRKVEREITSCEEKLAELEIKIETLMLQMQENTSDFVKLGELQAEIDLLNDEKDETEMTLLEAMEELESL

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=535, Percent_Identity=30.8411214953271, Blast_Score=235, Evalue=1e-61,
Organism=Homo sapiens, GI10947137, Length=537, Percent_Identity=30.1675977653631, Blast_Score=220, Evalue=3e-57,
Organism=Homo sapiens, GI27881506, Length=537, Percent_Identity=30.1675977653631, Blast_Score=220, Evalue=4e-57,
Organism=Homo sapiens, GI10947135, Length=534, Percent_Identity=31.2734082397004, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI69354671, Length=534, Percent_Identity=31.2734082397004, Blast_Score=204, Evalue=2e-52,
Organism=Escherichia coli, GI2367384, Length=528, Percent_Identity=36.3636363636364, Blast_Score=323, Evalue=3e-89,
Organism=Escherichia coli, GI1789751, Length=651, Percent_Identity=31.4900153609831, Blast_Score=313, Evalue=3e-86,
Organism=Escherichia coli, GI1787041, Length=533, Percent_Identity=34.3339587242026, Blast_Score=301, Evalue=1e-82,
Organism=Escherichia coli, GI1787182, Length=602, Percent_Identity=31.3953488372093, Blast_Score=266, Evalue=3e-72,
Organism=Escherichia coli, GI1788761, Length=235, Percent_Identity=28.0851063829787, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1789891, Length=253, Percent_Identity=26.0869565217391, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI145693107, Length=552, Percent_Identity=23.9130434782609, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1788165, Length=234, Percent_Identity=26.0683760683761, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI48995001, Length=523, Percent_Identity=24.4741873804971, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787029, Length=243, Percent_Identity=25.1028806584362, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787370, Length=223, Percent_Identity=26.0089686098655, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1790525, Length=229, Percent_Identity=25.764192139738, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1786563, Length=171, Percent_Identity=30.4093567251462, Blast_Score=62, Evalue=8e-11,
Organism=Escherichia coli, GI1789962, Length=233, Percent_Identity=24.8927038626609, Blast_Score=62, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17559834, Length=533, Percent_Identity=32.0825515947467, Blast_Score=239, Evalue=3e-63,
Organism=Caenorhabditis elegans, GI17555318, Length=549, Percent_Identity=28.9617486338798, Blast_Score=222, Evalue=6e-58,
Organism=Caenorhabditis elegans, GI17553372, Length=519, Percent_Identity=31.4065510597302, Blast_Score=217, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI115534520, Length=223, Percent_Identity=26.457399103139, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=538, Percent_Identity=31.2267657992565, Blast_Score=239, Evalue=7e-64,
Organism=Saccharomyces cerevisiae, GI6321121, Length=535, Percent_Identity=29.5327102803738, Blast_Score=217, Evalue=5e-57,
Organism=Saccharomyces cerevisiae, GI6325030, Length=399, Percent_Identity=28.0701754385965, Blast_Score=128, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6324314, Length=391, Percent_Identity=27.1099744245524, Blast_Score=113, Evalue=8e-26,
Organism=Saccharomyces cerevisiae, GI6323278, Length=391, Percent_Identity=25.0639386189258, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24666836, Length=513, Percent_Identity=34.1130604288499, Blast_Score=253, Evalue=2e-67,
Organism=Drosophila melanogaster, GI24642252, Length=539, Percent_Identity=30.0556586270872, Blast_Score=237, Evalue=2e-62,
Organism=Drosophila melanogaster, GI18859989, Length=539, Percent_Identity=30.0556586270872, Blast_Score=237, Evalue=2e-62,
Organism=Drosophila melanogaster, GI24641342, Length=532, Percent_Identity=31.7669172932331, Blast_Score=233, Evalue=3e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 71794; Mature: 71794

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILLQGNGIARTFGGDVLFENISFSLQDQSRIALVGRNGAGKSTLLKIIAGVEEASRGTI
CEEECCCCEEECCCCCEEEECCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCC
SKTKDLSMNYLAQDTGLNSQRTIFAEMLSVFDQLRQMEKQLRQMELQMGELGADELTLLM
CCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
KRYDSLSEEFRMKNGFTYESEIKSVLNGFRFDESMWEREISSLSGGQKTRLALAKMLLEK
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC
PQLLILDEPTNHLDIETLAWLENYLKNYDGSLLIVSHDRYFLDKVVNEVLELSRGELTRF
CCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCHHHC
SGNYSRYVEQREQKLLLELKNFEKQQKEIAKLEDYVAKNLVRASTTKMAQSRRKKLEKMD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLDAPTSDDKSAHVTFTPEKTSGNVVLTVSEATVGYSDNRLSGPINIDERKGESLAIVGP
HCCCCCCCCCCEEEEECCCCCCCCEEEEEECCEECCCCCCCCCCCCCCCCCCCEEEEECC
NGVGKTTLIKSIVGQIPFLAGQAKLGANVTLGYYDQEQGRLTTSNTVLDELWNEHRLLNE
CCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEECHHHHHHHHHHHHHHHHH
VEIRNMLGAFLFSGDDVKKTVGMLSGGEKARLLLAKLAMNHDNFLVLDEPTNHLDIDSRE
HHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHH
VLENALIDFPGTILFVSHDRYFINRVATKVLEIAPEGSTEFLGDYDYYVEKKEEQLAQTD
HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
ESDNGGLVESLAQQDFTAQKEAQKNRRKVEREITSCEEKLAELEIKIETLMLQMQENTSD
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
FVKLGELQAEIDLLNDEKDETEMTLLEAMEELESL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MILLQGNGIARTFGGDVLFENISFSLQDQSRIALVGRNGAGKSTLLKIIAGVEEASRGTI
CEEECCCCEEECCCCCEEEECCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCC
SKTKDLSMNYLAQDTGLNSQRTIFAEMLSVFDQLRQMEKQLRQMELQMGELGADELTLLM
CCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
KRYDSLSEEFRMKNGFTYESEIKSVLNGFRFDESMWEREISSLSGGQKTRLALAKMLLEK
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC
PQLLILDEPTNHLDIETLAWLENYLKNYDGSLLIVSHDRYFLDKVVNEVLELSRGELTRF
CCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCHHHC
SGNYSRYVEQREQKLLLELKNFEKQQKEIAKLEDYVAKNLVRASTTKMAQSRRKKLEKMD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLDAPTSDDKSAHVTFTPEKTSGNVVLTVSEATVGYSDNRLSGPINIDERKGESLAIVGP
HCCCCCCCCCCEEEEECCCCCCCCEEEEEECCEECCCCCCCCCCCCCCCCCCCEEEEECC
NGVGKTTLIKSIVGQIPFLAGQAKLGANVTLGYYDQEQGRLTTSNTVLDELWNEHRLLNE
CCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEECHHHHHHHHHHHHHHHHH
VEIRNMLGAFLFSGDDVKKTVGMLSGGEKARLLLAKLAMNHDNFLVLDEPTNHLDIDSRE
HHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHH
VLENALIDFPGTILFVSHDRYFINRVATKVLEIAPEGSTEFLGDYDYYVEKKEEQLAQTD
HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
ESDNGGLVESLAQQDFTAQKEAQKNRRKVEREITSCEEKLAELEIKIETLMLQMQENTSD
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
FVKLGELQAEIDLLNDEKDETEMTLLEAMEELESL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]