Click here to switch to the map view.

The map label for this gene is srtA [H]

Identifier: 125624257

GI number: 125624257

Start: 1417226

End: 1417978

Strand: Reverse

Name: srtA [H]

Synonym: llmg_1449

Alternate gene names: 125624257

Gene position: 1417978-1417226 (Counterclockwise)

Preceding gene: 125624258

Following gene: 125624256

Centisome position: 56.06

GC content: 31.87

Gene sequence:

>753_bases
ATGGAAGAGCGCACAAAAAATAAAAATAAAAAAAGAAAGTACAACTGGCTTTTAAATACATTCATTGTCCTATTATTTAT
TGTGGGCTTAGTATTAATTTTTAATAAACCTATTCGAAATATGATGATTGCCACAAAGAGTAATCATTATCAACTTCAAA
ATGTTTCAAAAGAAAAAATTGAAAAAAATAAAAAAGCTGATGTGAGTTTTGATTTCGCAGCAGTAAAATCAGTTGATTTC
CAATCCGTGCTTTCCAATCAGTTTGATAGCCAACCTTTACCAGTAATTGGGGGGATTGCAATCCCCGAATTGAATATTAA
TCTTCCTATTTTTAAAGGAGTTGGAAATACTTCACTTTTATATGGGGCCGGAACCATGAAAGCTGATCAAGTGATGGGTG
AAGGAAATTATACTCTTGCGGGTCACAATATGACTGGTTTCACTTCAGACTTATCAATATTATTTACTCCTTTAGAAAAA
GCAAAAGCGGGAATGTCCATTTATGTTACTGACAAAAATAATGTTTATCAGTATAAAATTGATAAAATTGATGTGGTAAC
GCCAGAACATGTTGAAGTTTTAAATGATACTCCGGGTAAAAAAGAAATCACTTTGGTAACTTGTGCTGATGCCGAAGCCA
CACATCGGATTATTGTTCATGGAACATTTGTTGATGAGAAGGCATTTGATAAAGTGACAGATTCTGTGAAAAATGCTTTT
GAGAAAAAATATAATCAAATCAATAATTTCTAA

Upstream 100 bases:

>100_bases
AAGATTTTTTTGTAAAAGAATTAAAACTTTTGACTTGGAACTTAAATCGTGATACAATAAGTGGAAAGAGTACATTAAAT
AAAAAGGTGGTCATATATAG

Downstream 100 bases:

>100_bases
TTTAAAAAATTTCGTGTAAATCACGAAATTTTTTTTGTCTTTATATAGAAGAGCAAACTGAAAATAATAAGAAAAAAAGA
AATTTATGGAGTACTGTAAA

Product: sortase SrtA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MEERTKNKNKKRKYNWLLNTFIVLLFIVGLVLIFNKPIRNMMIATKSNHYQLQNVSKEKIEKNKKADVSFDFAAVKSVDF
QSVLSNQFDSQPLPVIGGIAIPELNINLPIFKGVGNTSLLYGAGTMKADQVMGEGNYTLAGHNMTGFTSDLSILFTPLEK
AKAGMSIYVTDKNNVYQYKIDKIDVVTPEHVEVLNDTPGKKEITLVTCADAEATHRIIVHGTFVDEKAFDKVTDSVKNAF
EKKYNQINNF

Sequences:

>Translated_250_residues
MEERTKNKNKKRKYNWLLNTFIVLLFIVGLVLIFNKPIRNMMIATKSNHYQLQNVSKEKIEKNKKADVSFDFAAVKSVDF
QSVLSNQFDSQPLPVIGGIAIPELNINLPIFKGVGNTSLLYGAGTMKADQVMGEGNYTLAGHNMTGFTSDLSILFTPLEK
AKAGMSIYVTDKNNVYQYKIDKIDVVTPEHVEVLNDTPGKKEITLVTCADAEATHRIIVHGTFVDEKAFDKVTDSVKNAF
EKKYNQINNF
>Mature_250_residues
MEERTKNKNKKRKYNWLLNTFIVLLFIVGLVLIFNKPIRNMMIATKSNHYQLQNVSKEKIEKNKKADVSFDFAAVKSVDF
QSVLSNQFDSQPLPVIGGIAIPELNINLPIFKGVGNTSLLYGAGTMKADQVMGEGNYTLAGHNMTGFTSDLSILFTPLEK
AKAGMSIYVTDKNNVYQYKIDKIDVVTPEHVEVLNDTPGKKEITLVTCADAEATHRIIVHGTFVDEKAFDKVTDSVKNAF
EKKYNQINNF

Specific function: Unknown

COG id: COG3764

COG function: function code M; Sortase (surface protein transpeptidase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C60 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005754 [H]

Pfam domain/function: PF04203 Sortase [H]

EC number: NA

Molecular weight: Translated: 28075; Mature: 28075

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEERTKNKNKKRKYNWLLNTFIVLLFIVGLVLIFNKPIRNMMIATKSNHYQLQNVSKEKI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCEEECCCCHHHH
EKNKKADVSFDFAAVKSVDFQSVLSNQFDSQPLPVIGGIAIPELNINLPIFKGVGNTSLL
HCCCCCCCEEEHHHHHCCCHHHHHHHCCCCCCCCEECCEEECEEECCCEEEECCCCCEEE
YGAGTMKADQVMGEGNYTLAGHNMTGFTSDLSILFTPLEKAKAGMSIYVTDKNNVYQYKI
EECCCCCHHHEECCCCEEEECCCCCCCCCCHHEEEECHHHHHCCCEEEEECCCCEEEEEE
DKIDVVTPEHVEVLNDTPGKKEITLVTCADAEATHRIIVHGTFVDEKAFDKVTDSVKNAF
CEEEEECCHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHHHH
EKKYNQINNF
HHHHHHHCCC
>Mature Secondary Structure
MEERTKNKNKKRKYNWLLNTFIVLLFIVGLVLIFNKPIRNMMIATKSNHYQLQNVSKEKI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCEEECCCCHHHH
EKNKKADVSFDFAAVKSVDFQSVLSNQFDSQPLPVIGGIAIPELNINLPIFKGVGNTSLL
HCCCCCCCEEEHHHHHCCCHHHHHHHCCCCCCCCEECCEEECEEECCCEEEECCCCCEEE
YGAGTMKADQVMGEGNYTLAGHNMTGFTSDLSILFTPLEKAKAGMSIYVTDKNNVYQYKI
EECCCCCHHHEECCCCEEEECCCCCCCCCCHHEEEECHHHHHCCCEEEEECCCCEEEEEE
DKIDVVTPEHVEVLNDTPGKKEITLVTCADAEATHRIIVHGTFVDEKAFDKVTDSVKNAF
CEEEEECCHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHHHH
EKKYNQINNF
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]