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The map label for this gene is xerD

Identifier: 125624021

GI number: 125624021

Start: 1161573

End: 1162289

Strand: Direct

Name: xerD

Synonym: llmg_1191

Alternate gene names: NA

Gene position: 1161573-1162289 (Clockwise)

Preceding gene: 125624020

Following gene: 125624022

Centisome position: 45.92

GC content: 30.54

Gene sequence:

>717_bases
ATGAAATTACCAAACGAGATTGAGGAGTATTTAGTAAGTAGAAACTTTTCTGAAAATACTCGCTCAAATTATTATTATGA
CTTAGTCTATTTGCAGGCTTTTTTTGAAGATAAGTCTGTCACAGAAGAAGCACTAGAACTTTACAAACACCAGCTTAGTA
AACTCTCTCCTGCGGCACAACGGCGAAAAATTTCGAGTGCCAACCAATATTTTCTATTTTTATATGAAAATAAAAAAATA
AACCAGTTTTTCAAAATTAAGCAAGTTGTTCAGAAAAAAACTCAAAGTTCTGAGAGTTATCATCCTATGATAAAAGAATT
TCCAGAATTTTATGGACCTCTAAGTTGTCCAGGGCAATTTTTAGCTTTATTGATATTAGAATTTGGTCTTAATTTTGCAG
AGATTCAAAAATTAAAATGGGAAAATTTTAATTGGAATTTTAAATATCTCACAATCGAAAAAGCTGGAATAAAACGAGTC
TTACCCATTCGAGAAAAATTTGCCATCAGAGTTAAGGCCATAAAAAATGCCGATGAATTATTTGCAAAATCTCGCCAATT
CCTATATACAGAATTAAAGAAATTCACTAATTATTCTTCTAAAGAGATTAGGGAACAGTATATTTTGCATCAGGTAAAAG
CGGGAAAAACAATATATGAGTTGGCTAACTTACTTGGCTTAAGCACAATTACTACCTTAGAAAAATATTATAGATAG

Upstream 100 bases:

>100_bases
TTTCTACCAGTTGTCAAAAGGCAGGAATTTATGGGAATCGTAGTTCGTCAAGAAATATTGAAGGCTTTTAGTGCCTTCGC
TCACGACTTTACAAAATATT

Downstream 100 bases:

>100_bases
GATTTTTACACTATTTTAATTATGTAAATTATGATCAAAGAAATCAATATAAAAATTAAAAACTTTGAGGGTCCGCTTGA
TCTTCTCTTACATTTAGTTA

Product: site-specific tyrosine recombinase XerD-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKLPNEIEEYLVSRNFSENTRSNYYYDLVYLQAFFEDKSVTEEALELYKHQLSKLSPAAQRRKISSANQYFLFLYENKKI
NQFFKIKQVVQKKTQSSESYHPMIKEFPEFYGPLSCPGQFLALLILEFGLNFAEIQKLKWENFNWNFKYLTIEKAGIKRV
LPIREKFAIRVKAIKNADELFAKSRQFLYTELKKFTNYSSKEIREQYILHQVKAGKTIYELANLLGLSTITTLEKYYR

Sequences:

>Translated_238_residues
MKLPNEIEEYLVSRNFSENTRSNYYYDLVYLQAFFEDKSVTEEALELYKHQLSKLSPAAQRRKISSANQYFLFLYENKKI
NQFFKIKQVVQKKTQSSESYHPMIKEFPEFYGPLSCPGQFLALLILEFGLNFAEIQKLKWENFNWNFKYLTIEKAGIKRV
LPIREKFAIRVKAIKNADELFAKSRQFLYTELKKFTNYSSKEIREQYILHQVKAGKTIYELANLLGLSTITTLEKYYR
>Mature_238_residues
MKLPNEIEEYLVSRNFSENTRSNYYYDLVYLQAFFEDKSVTEEALELYKHQLSKLSPAAQRRKISSANQYFLFLYENKKI
NQFFKIKQVVQKKTQSSESYHPMIKEFPEFYGPLSCPGQFLALLILEFGLNFAEIQKLKWENFNWNFKYLTIEKAGIKRV
LPIREKFAIRVKAIKNADELFAKSRQFLYTELKKFTNYSSKEIREQYILHQVKAGKTIYELANLLGLSTITTLEKYYR

Specific function: Putative tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD-like subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XERDL_LACLM (A2RKH4)

Other databases:

- EMBL:   AM406671
- RefSeq:   YP_001032504.1
- STRING:   A2RKH4
- GeneID:   4797962
- GenomeReviews:   AM406671_GR
- KEGG:   llm:llmg_1191
- eggNOG:   COG0582
- HOGENOM:   HBG697235
- OMA:   STVNQFL
- ProtClustDB:   PRK02436
- GO:   GO:0005737
- HAMAP:   MF_01817
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR020876
- Gene3D:   G3DSA:1.10.150.130
- Gene3D:   G3DSA:1.10.443.10

Pfam domain/function: PF02899 Phage_integr_N; SSF56349 DNA_brk_join_enz

EC number: NA

Molecular weight: Translated: 28385; Mature: 28385

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: ACT_SITE 236-236

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLPNEIEEYLVSRNFSENTRSNYYYDLVYLQAFFEDKSVTEEALELYKHQLSKLSPAAQ
CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHH
RRKISSANQYFLFLYENKKINQFFKIKQVVQKKTQSSESYHPMIKEFPEFYGPLSCPGQF
HHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHH
LALLILEFGLNFAEIQKLKWENFNWNFKYLTIEKAGIKRVLPIREKFAIRVKAIKNADEL
HHHHHHHHCCCHHHHHHHHCCCCCCEEEEEEEECCCCHHHCCHHHHHHHHHHHHCCHHHH
FAKSRQFLYTELKKFTNYSSKEIREQYILHQVKAGKTIYELANLLGLSTITTLEKYYR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLPNEIEEYLVSRNFSENTRSNYYYDLVYLQAFFEDKSVTEEALELYKHQLSKLSPAAQ
CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHH
RRKISSANQYFLFLYENKKINQFFKIKQVVQKKTQSSESYHPMIKEFPEFYGPLSCPGQF
HHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHH
LALLILEFGLNFAEIQKLKWENFNWNFKYLTIEKAGIKRVLPIREKFAIRVKAIKNADEL
HHHHHHHHCCCHHHHHHHHCCCCCCEEEEEEEECCCCHHHCCHHHHHHHHHHHHCCHHHH
FAKSRQFLYTELKKFTNYSSKEIREQYILHQVKAGKTIYELANLLGLSTITTLEKYYR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA