| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485416
Identifier: 124485416
GI number: 124485416
Start: 560835
End: 562046
Strand: Reverse
Name: 124485416
Synonym: Mlab_0591
Alternate gene names: NA
Gene position: 562046-560835 (Counterclockwise)
Preceding gene: 124485422
Following gene: 124485415
Centisome position: 31.14
GC content: 55.61
Gene sequence:
>1212_bases ATGATAGAACTGCAGTCATCTCCCAAAGTTTACACCGGATGGACCGAACGGAGCTGCACACCTGACGAAACCCTCAAGCG GATCGAACAGTTCGTTCCGGAGGCAGGCATCACCCGTGTTGCCGACATCACCGACCTTGACCGGATCGGGATCCCCGTAT ACTCTTGCATCCGTCCAACAGCCGCCGACGGGGCAATCTCGGTATACAACGGAAAAGGCGGGACCCCGGCCGAAGCCAGA GTCGCCGGGATCATGGAAGGGATCGAACGATACTCGGCCGAAGCAATACCCCGGGATATCGCAAATATCTCCTACAGCAA TCTTCGGAGAACCGAAACCGCCGTCGATCCCGTGGACCTCATCCTTCCCCACACAACCGATCCCAATCTCGAAGTCCCCT GGGTCGACGGGTGGGACATCACCAATAATGAAGCGGTCAAACTTCCGCTTTGCGCCGTCATTCATCCAAATCCTTTCAGC TACCCGACACTCTTTCGAACAAGTTCCAACGGTATCGCATCAGGAAACACCCTGGAAGAGGCGCTCTTCTATGCACTTAC CGAAGTGATCGAGCGGGATGCATGGTCACTGGTCGAAACTACCAGAAATACCGGCCCAAAACTCACCGACCTCCCGCCAA GAGCCGCGGAGATGCTCGCAAAATTCACCGCCGCCGGAGTCGAAGTGACACTTCGAAACATCACCTCGGACGTCGGGATC CCGACGATCGCCGCCGTATCCGATGATATCGAACTCAAAGACTCCCGGCTTTTGACGATAGGAATGGGGACCCACACCAA CCCCGAGATCGCCATGATCAGGGCACTCTCCGAAGTCGCACAGAGCAGAGCGACCCAGATCCACGGGGCACGTGAGGACG CAACGCTTGCCCAGTTCCGCGAAATGATGGGATACGACCGGGTCAAACGGATGAATGCCTACTGGTTCAAAGGCGATGAA TATCAGGCCGCATCCGAAATCCCGAACAATGCAACGAAAGATTTCAAAACCGACATCGAGCTGATCGTGAAAAATCTCGC GGACGTCGGCCTTGACCGTGTGATCGTCTGCGATCTTACCGATCCGGAACTCAAAATCCCGGTCGTCCGCGTAGTGGTCC CGGGTCTTGAATGTTATACCATCGACAACGAACGCAGAGGAAAGAGGTGTGTGGAGATTGAACGTCGTCGTCTTCATCGG ACCCAGTCTTGA
Upstream 100 bases:
>100_bases CGTGAAACTAACACCGCGTAACGCCTATTCTCAGAGAAAAACGAGAGGCGGAATTTCCATCCCGCAACATACTTTAGCTT TCCCGCCAGATACTCATACA
Downstream 100 bases:
>100_bases TCTGGCAGCCGCCAAATCAATTCTTCCGGACGCGGTCTTTTTACCGCCGGTAAAACGCGGAGCAGCTGCCGCCGCGGCAG AAAACGCGGACATTATGGTC
Product: NADPH-dependent FMN reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 403; Mature: 403
Protein sequence:
>403_residues MIELQSSPKVYTGWTERSCTPDETLKRIEQFVPEAGITRVADITDLDRIGIPVYSCIRPTAADGAISVYNGKGGTPAEAR VAGIMEGIERYSAEAIPRDIANISYSNLRRTETAVDPVDLILPHTTDPNLEVPWVDGWDITNNEAVKLPLCAVIHPNPFS YPTLFRTSSNGIASGNTLEEALFYALTEVIERDAWSLVETTRNTGPKLTDLPPRAAEMLAKFTAAGVEVTLRNITSDVGI PTIAAVSDDIELKDSRLLTIGMGTHTNPEIAMIRALSEVAQSRATQIHGAREDATLAQFREMMGYDRVKRMNAYWFKGDE YQAASEIPNNATKDFKTDIELIVKNLADVGLDRVIVCDLTDPELKIPVVRVVVPGLECYTIDNERRGKRCVEIERRRLHR TQS
Sequences:
>Translated_403_residues MIELQSSPKVYTGWTERSCTPDETLKRIEQFVPEAGITRVADITDLDRIGIPVYSCIRPTAADGAISVYNGKGGTPAEAR VAGIMEGIERYSAEAIPRDIANISYSNLRRTETAVDPVDLILPHTTDPNLEVPWVDGWDITNNEAVKLPLCAVIHPNPFS YPTLFRTSSNGIASGNTLEEALFYALTEVIERDAWSLVETTRNTGPKLTDLPPRAAEMLAKFTAAGVEVTLRNITSDVGI PTIAAVSDDIELKDSRLLTIGMGTHTNPEIAMIRALSEVAQSRATQIHGAREDATLAQFREMMGYDRVKRMNAYWFKGDE YQAASEIPNNATKDFKTDIELIVKNLADVGLDRVIVCDLTDPELKIPVVRVVVPGLECYTIDNERRGKRCVEIERRRLHR TQS >Mature_403_residues MIELQSSPKVYTGWTERSCTPDETLKRIEQFVPEAGITRVADITDLDRIGIPVYSCIRPTAADGAISVYNGKGGTPAEAR VAGIMEGIERYSAEAIPRDIANISYSNLRRTETAVDPVDLILPHTTDPNLEVPWVDGWDITNNEAVKLPLCAVIHPNPFS YPTLFRTSSNGIASGNTLEEALFYALTEVIERDAWSLVETTRNTGPKLTDLPPRAAEMLAKFTAAGVEVTLRNITSDVGI PTIAAVSDDIELKDSRLLTIGMGTHTNPEIAMIRALSEVAQSRATQIHGAREDATLAQFREMMGYDRVKRMNAYWFKGDE YQAASEIPNNATKDFKTDIELIVKNLADVGLDRVIVCDLTDPELKIPVVRVVVPGLECYTIDNERRGKRCVEIERRRLHR TQS
Specific function: Unknown
COG id: COG1944
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0142 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017667 - InterPro: IPR003776 [H]
Pfam domain/function: PF02624 YcaO [H]
EC number: NA
Molecular weight: Translated: 44644; Mature: 44644
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIELQSSPKVYTGWTERSCTPDETLKRIEQFVPEAGITRVADITDLDRIGIPVYSCIRPT CCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEHHCCCCHHHCCCCHHHHCCCC AADGAISVYNGKGGTPAEARVAGIMEGIERYSAEAIPRDIANISYSNLRRTETAVDPVDL CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCE ILPHTTDPNLEVPWVDGWDITNNEAVKLPLCAVIHPNPFSYPTLFRTSSNGIASGNTLEE EECCCCCCCEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCHHHH ALFYALTEVIERDAWSLVETTRNTGPKLTDLPPRAAEMLAKFTAAGVEVTLRNITSDVGI HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHCCC PTIAAVSDDIELKDSRLLTIGMGTHTNPEIAMIRALSEVAQSRATQIHGAREDATLAQFR CEEEEECCCCEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH EMMGYDRVKRMNAYWFKGDEYQAASEIPNNATKDFKTDIELIVKNLADVGLDRVIVCDLT HHHCHHHHHHCCCEEECCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC DPELKIPVVRVVVPGLECYTIDNERRGKRCVEIERRRLHRTQS CCCCCCCEEEEEECCCEEEECCCHHCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MIELQSSPKVYTGWTERSCTPDETLKRIEQFVPEAGITRVADITDLDRIGIPVYSCIRPT CCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEHHCCCCHHHCCCCHHHHCCCC AADGAISVYNGKGGTPAEARVAGIMEGIERYSAEAIPRDIANISYSNLRRTETAVDPVDL CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCE ILPHTTDPNLEVPWVDGWDITNNEAVKLPLCAVIHPNPFSYPTLFRTSSNGIASGNTLEE EECCCCCCCEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCHHHH ALFYALTEVIERDAWSLVETTRNTGPKLTDLPPRAAEMLAKFTAAGVEVTLRNITSDVGI HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHCCC PTIAAVSDDIELKDSRLLTIGMGTHTNPEIAMIRALSEVAQSRATQIHGAREDATLAQFR CEEEEECCCCEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH EMMGYDRVKRMNAYWFKGDEYQAASEIPNNATKDFKTDIELIVKNLADVGLDRVIVCDLT HHHCHHHHHHCCCEEECCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC DPELKIPVVRVVVPGLECYTIDNERRGKRCVEIERRRLHRTQS CCCCCCCEEEEEECCCEEEECCCHHCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]