| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485379
Identifier: 124485379
GI number: 124485379
Start: 526954
End: 528498
Strand: Reverse
Name: 124485379
Synonym: Mlab_0554
Alternate gene names: NA
Gene position: 528498-526954 (Counterclockwise)
Preceding gene: 124485380
Following gene: 124485378
Centisome position: 29.28
GC content: 52.43
Gene sequence:
>1545_bases ATGACCAAGATCCATGTGTTTCTCAACGGCGAGCAGAAAACCGTTGAAGAAACGACAACCATCAAAGATCTCCTTCCAAA TCAGCCGGAAGGGACCTCTGTTGTTCTCCTTCTACCCGGAAGCGTTTCCCGGGAAAAAACCCCGCACCTTCGTCTGACGA CGACCGCCGGGGATATTGTCATCGAGCTTGCCAAAAAAACGACCTTCCCTTTGCCCACGGGAGAAGTGAAGGAGAATCTG CGTGTCCACTTCGACGACAGAAATTCAGTATCCTTCGGCCCGTTCCCTCAGAAGTTTACGCCCGATAAAAACTCCTACCG ATACGAACGGGGAATGGTCTGTCTGGGATCGGGCGGATACGACTCAAAAAATGCCTATCTGACCTTTTCCCGCAGAGAAC ATATGGCAGATCACGGGGCAGCCAAAGGCGGAGCTGTATTAGGCAAAGTCATCTACGGCCTTGGGATCATGAACCGCTGG AAAAACGGCGACATGATAACCAGGATCGAAGAGGTCTTTTCCAGCACGGATTCGACCAATGCGAAGGTGACCTCGGACCT CTCGGGTGTTGTGAAGGAAGGGATGCAGATCTTTTCCGAACTGGTGGTCACCGCGGAAGGGTATCAGGAGGATCATGCGG AAATCGACTGCGGATGCACGGAATCGGTCGAACATATGCTCTTCTGCCTGCGTGAAAACAGGCTCAAAATCGACCGTACC GCGTCTACCTACATCAGGGATCATACCGAAGGAAAACTCTTTGTCCCTCAGGAACGCCAGAAACCGAGAAGAGAAGGGAC CGTGACGATACGAACGGCCGGAAAAGGATCGGGGGCCTTGTATATTTACACACGCGATGTGCCGAGCAATCAGCATCACA CGCGAACCGGCTCGGTCACGCGGGGAATAGAACTCGCCAAGTTCTCCACGGAAAAAAATGTCCTTTCGGTAAGACCGGTG CCGGAACTCCTTGACCTGCGGGGCCTGCCCCTCGGCGAAGCGGTCAGTCTTGCGAAAAAACGCGGACTGAAAGTGATGGC CGACAACAAAGATGTAAACAACAGGGTCGTCATCAACCAGAAACCGGAGACGACCCTTGAAGTCTTAAAAGAAGGAAAGG TCTTCCTCTATACGATGGATCTCAAAGATGTCATCGACATCTCGCTGGATTACAAAAAAGCCCCGCTCTCTGTCGACCTG TTCCGCCGGGTCACCGGACTGAAGAGATATGCGATTGGGACGATGCCTTTCATTTACAATGTGGATGACGAGATGTACCT CTTCAAACCGCCGTTCTCAACCGGGACGAACATCATCCCTGAAAACACCCCGAAAAAACCGGTCAAGACCGACACTCTCG CACTGACCAACGACTCGCGGCACGCAGTCGGTATGGTCGGGGTCAGAGTGGTCGAGAATACGGAGTACGGACCTACCGGA GAACCTTTTGGAGGAACGAACATTATCGGGAAGGTTCTCGATATGGATAAATTATCCATGATGAAAGAGGGCGGGACCGT CTACATCAGGGAGGTGAAAGAGTGA
Upstream 100 bases:
>100_bases GAAAAAGGCGACCCTTGCAGGAGGGGCTCCCGAGGCGGAAGCAACCGAAGGTGCTCTCCATGAAAAGACCGATGAAATGT TCGAGATGTAGGTCAGGATC
Downstream 100 bases:
>100_bases AACCCTATGTTCCAGAGTATGTCGGGACCGTAACGAAGTACGTTTTCGTTGACTCTCCAAACACAACGCCTCAGGACATC GCGACCGCCGCATACGAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 514; Mature: 513
Protein sequence:
>514_residues MTKIHVFLNGEQKTVEETTTIKDLLPNQPEGTSVVLLLPGSVSREKTPHLRLTTTAGDIVIELAKKTTFPLPTGEVKENL RVHFDDRNSVSFGPFPQKFTPDKNSYRYERGMVCLGSGGYDSKNAYLTFSRREHMADHGAAKGGAVLGKVIYGLGIMNRW KNGDMITRIEEVFSSTDSTNAKVTSDLSGVVKEGMQIFSELVVTAEGYQEDHAEIDCGCTESVEHMLFCLRENRLKIDRT ASTYIRDHTEGKLFVPQERQKPRREGTVTIRTAGKGSGALYIYTRDVPSNQHHTRTGSVTRGIELAKFSTEKNVLSVRPV PELLDLRGLPLGEAVSLAKKRGLKVMADNKDVNNRVVINQKPETTLEVLKEGKVFLYTMDLKDVIDISLDYKKAPLSVDL FRRVTGLKRYAIGTMPFIYNVDDEMYLFKPPFSTGTNIIPENTPKKPVKTDTLALTNDSRHAVGMVGVRVVENTEYGPTG EPFGGTNIIGKVLDMDKLSMMKEGGTVYIREVKE
Sequences:
>Translated_514_residues MTKIHVFLNGEQKTVEETTTIKDLLPNQPEGTSVVLLLPGSVSREKTPHLRLTTTAGDIVIELAKKTTFPLPTGEVKENL RVHFDDRNSVSFGPFPQKFTPDKNSYRYERGMVCLGSGGYDSKNAYLTFSRREHMADHGAAKGGAVLGKVIYGLGIMNRW KNGDMITRIEEVFSSTDSTNAKVTSDLSGVVKEGMQIFSELVVTAEGYQEDHAEIDCGCTESVEHMLFCLRENRLKIDRT ASTYIRDHTEGKLFVPQERQKPRREGTVTIRTAGKGSGALYIYTRDVPSNQHHTRTGSVTRGIELAKFSTEKNVLSVRPV PELLDLRGLPLGEAVSLAKKRGLKVMADNKDVNNRVVINQKPETTLEVLKEGKVFLYTMDLKDVIDISLDYKKAPLSVDL FRRVTGLKRYAIGTMPFIYNVDDEMYLFKPPFSTGTNIIPENTPKKPVKTDTLALTNDSRHAVGMVGVRVVENTEYGPTG EPFGGTNIIGKVLDMDKLSMMKEGGTVYIREVKE >Mature_513_residues TKIHVFLNGEQKTVEETTTIKDLLPNQPEGTSVVLLLPGSVSREKTPHLRLTTTAGDIVIELAKKTTFPLPTGEVKENLR VHFDDRNSVSFGPFPQKFTPDKNSYRYERGMVCLGSGGYDSKNAYLTFSRREHMADHGAAKGGAVLGKVIYGLGIMNRWK NGDMITRIEEVFSSTDSTNAKVTSDLSGVVKEGMQIFSELVVTAEGYQEDHAEIDCGCTESVEHMLFCLRENRLKIDRTA STYIRDHTEGKLFVPQERQKPRREGTVTIRTAGKGSGALYIYTRDVPSNQHHTRTGSVTRGIELAKFSTEKNVLSVRPVP ELLDLRGLPLGEAVSLAKKRGLKVMADNKDVNNRVVINQKPETTLEVLKEGKVFLYTMDLKDVIDISLDYKKAPLSVDLF RRVTGLKRYAIGTMPFIYNVDDEMYLFKPPFSTGTNIIPENTPKKPVKTDTLALTNDSRHAVGMVGVRVVENTEYGPTGE PFGGTNIIGKVLDMDKLSMMKEGGTVYIREVKE
Specific function: Unknown
COG id: COG4070
COG function: function code O; Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0288 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016466 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57219; Mature: 57088
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKIHVFLNGEQKTVEETTTIKDLLPNQPEGTSVVLLLPGSVSREKTPHLRLTTTAGDIV CEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCEE IELAKKTTFPLPTGEVKENLRVHFDDRNSVSFGPFPQKFTPDKNSYRYERGMVCLGSGGY EEEHHHCCCCCCCHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCEEEEECCCC DSKNAYLTFSRREHMADHGAAKGGAVLGKVIYGLGIMNRWKNGDMITRIEEVFSSTDSTN CCCCEEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC AKVTSDLSGVVKEGMQIFSELVVTAEGYQEDHAEIDCGCTESVEHMLFCLRENRLKIDRT CEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHCCCEEEECC ASTYIRDHTEGKLFVPQERQKPRREGTVTIRTAGKGSGALYIYTRDVPSNQHHTRTGSVT HHHHHEECCCCCEECCHHHCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCC RGIELAKFSTEKNVLSVRPVPELLDLRGLPLGEAVSLAKKRGLKVMADNKDVNNRVVINQ CCEEEEEECCCCCEEEECCCHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEC KPETTLEVLKEGKVFLYTMDLKDVIDISLDYKKAPLSVDLFRRVTGLKRYAIGTMPFIYN CCHHHHHHHHCCCEEEEEECHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHEECCCEEEE VDDEMYLFKPPFSTGTNIIPENTPKKPVKTDTLALTNDSRHAVGMVGVRVVENTEYGPTG CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCC EPFGGTNIIGKVLDMDKLSMMKEGGTVYIREVKE CCCCCHHHHHHHHCHHHHHHHHCCCEEEEEEECC >Mature Secondary Structure TKIHVFLNGEQKTVEETTTIKDLLPNQPEGTSVVLLLPGSVSREKTPHLRLTTTAGDIV EEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCEE IELAKKTTFPLPTGEVKENLRVHFDDRNSVSFGPFPQKFTPDKNSYRYERGMVCLGSGGY EEEHHHCCCCCCCHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCEEEEECCCC DSKNAYLTFSRREHMADHGAAKGGAVLGKVIYGLGIMNRWKNGDMITRIEEVFSSTDSTN CCCCEEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC AKVTSDLSGVVKEGMQIFSELVVTAEGYQEDHAEIDCGCTESVEHMLFCLRENRLKIDRT CEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHCCCEEEECC ASTYIRDHTEGKLFVPQERQKPRREGTVTIRTAGKGSGALYIYTRDVPSNQHHTRTGSVT HHHHHEECCCCCEECCHHHCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCC RGIELAKFSTEKNVLSVRPVPELLDLRGLPLGEAVSLAKKRGLKVMADNKDVNNRVVINQ CCEEEEEECCCCCEEEECCCHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEC KPETTLEVLKEGKVFLYTMDLKDVIDISLDYKKAPLSVDLFRRVTGLKRYAIGTMPFIYN CCHHHHHHHHCCCEEEEEECHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHEECCCEEEE VDDEMYLFKPPFSTGTNIIPENTPKKPVKTDTLALTNDSRHAVGMVGVRVVENTEYGPTG CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCC EPFGGTNIIGKVLDMDKLSMMKEGGTVYIREVKE CCCCCHHHHHHHHCHHHHHHHHCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA