Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
---|---|
Accession | NC_008825 |
Length | 4,044,195 |
Click here to switch to the map view.
The map label for this gene is exaA [H]
Identifier: 124265666
GI number: 124265666
Start: 512867
End: 514609
Strand: Direct
Name: exaA [H]
Synonym: Mpe_A0473
Alternate gene names: 124265666
Gene position: 512867-514609 (Clockwise)
Preceding gene: 124265665
Following gene: 124265670
Centisome position: 12.68
GC content: 65.63
Gene sequence:
>1743_bases ATGCGTCTGCACCTGCTTTCTTTGTTGGTGGCTGCCGCCTGCGCCAGTGTTGGCGCCCAGGCCGCCGGCGTCACCGACGC GATGATCGACAACGATGCCAAGACCCCGAACGACGTTCTGAGCTGGGGCATCGGCTCGCAGGGGCAGCGCTATTCCCCGC TCAAGCAGGTCAACACCTCGACCGTGCAGAAGCTGGTGCCGGCCTGGGCCTTCTCGTTCGGCGGCGAAAAGCAGCGCGGG CAGCAATCGCAGCCGCTGATCCATGACGGCAAGATGTTCGTCACGGCGTCTTACTCGCGGATCTACGCGCTGGACGTCAA GACCGGCACCAAGCTCTGGAAGTATGAGCACCGCCTGCCCGAAGGCATCATGCCCTGCTGCGATGTGATCAACCGCGGTG CCGCGCTGTACGACAACCTGGTCATCTTCGGCACGCTCGACGCCCAGCTCGTCGCGCTCGACCAGAAGACCGGCGACGTG GTCTGGAAGGAGAAGATCGACGACTACGCGGCCGGCTACAGCTACACCGCCGCCCCGCTGATCGCCGGTGGCCTGCTGCT GACCGGTGTGTCCGGCGGCGAATTCGGCATCGTCGGACGCGTCGAGGCGCGCGATCCCAAGACCGGCAAGATGGTCTGGA TCCGCCCGACCGTCGAAGGTCACATGGGCTACAAGTTCGACAAGGACGGCAACAAGACCGAAATCGGCATCTCGGGCACG ACGGGCAAGACCTGGCCGGGCGACATGTGGAAGTCGGGCGGCGCGGCCACCTGGCTGGGCGGCACCTACGACGCCAAGAC CGGCCTGGCCTACTTCGGCACCGGCAACCCCGGCCCGTGGAACAGCCACCTGCGTCCCGGCGACAACCTGTTCTCGTGCG CGACGGTCGCGATCGACGTCAAGACCGGCCAGATCAAGTGGCACTATCAGACCACACCGCACGACGGCTGGGACTTCGAC GGCGTGAACGAGTTCGTCACCTTCGACATGGACGGCAAGCGCGTCGGCGGCAAGGCCGACCGCAACGGCTTCTTCTACGT GATCGACGCCGCCAACGGCAAGCTCGAGAACGCTTTCCCCTTCGTCAAGAAGATCACCTGGGCCACCGGCATCGATCTGA AGACCGGCCGTCCCAACTACGTGCCGGAGAACCGTCCGGGCGACCCGACCGCGGGTGCCGACGGCAAGAAGGGCAACTCG GTGTTCGCGGCGCCGTCCTTCCTTGGCGGCAAGAACCAGATGCCGATGGCTTACTCGCCGGACACCAAGCTGTTCTACGT GCCGTCGAACGAGTGGGGCATGGAGATCTGGAACGAGCCCGTGACCTACAAGAAGGGCGCGGCCTACCTGGGCGCCGGCT TCACGATCAAGACGATCAACGACGAGTACATCGGCGCGATGCGTGCGATCGACCCGAAGACCGGCAAGACCGTCTGGGAA GTGAAGAACAACGCGCCGCTGTGGGGCGGTGTGCTGACGACGGCCGGCAACCTGGTGTTCTGGGGCACGCCGGAAGGCTT CCTGAAGGCCGCCGACGCGAAGACCGGCAAGGTCGTCTGGGAATTCCAGACCGGTTCGGGCGTCGTGGCGCCGCCGGTCA CCTGGCAGCAGGACGGCGAGCAGTACGTCTCGGTCGTTTCCGGCTGGGGCGGCGCCGTGCCGCTGTGGGGTGGCGACGTG GCCAAGAAGGTCAACTTCCTGGAGCAGGGCGGCACCGTGTGGGTGTTCAAGCTGCCGAAGTGA
Upstream 100 bases:
>100_bases CCGATCGGTCCGTGGCACGGGCCTTGCCCTCTGGGAGTCAGAACGCGCTTTAGCGGCCATGTCGTGTCGCACGCGTCTCA CCCCCCGAGGAGACAAAACT
Downstream 100 bases:
>100_bases ACTGAGCGAGTACCACGCCCGGGATGACCGGGCGCGTTGCACGGCACGGACGCTCGCGCGTCCGTGCCGTTTTTCGTGGC CGACCGGTACCGTTCTCACG
Product: quinoprotein ethanol dehydrogenase
Products: NA
Alternate protein names: QEDH [H]
Number of amino acids: Translated: 580; Mature: 580
Protein sequence:
>580_residues MRLHLLSLLVAAACASVGAQAAGVTDAMIDNDAKTPNDVLSWGIGSQGQRYSPLKQVNTSTVQKLVPAWAFSFGGEKQRG QQSQPLIHDGKMFVTASYSRIYALDVKTGTKLWKYEHRLPEGIMPCCDVINRGAALYDNLVIFGTLDAQLVALDQKTGDV VWKEKIDDYAAGYSYTAAPLIAGGLLLTGVSGGEFGIVGRVEARDPKTGKMVWIRPTVEGHMGYKFDKDGNKTEIGISGT TGKTWPGDMWKSGGAATWLGGTYDAKTGLAYFGTGNPGPWNSHLRPGDNLFSCATVAIDVKTGQIKWHYQTTPHDGWDFD GVNEFVTFDMDGKRVGGKADRNGFFYVIDAANGKLENAFPFVKKITWATGIDLKTGRPNYVPENRPGDPTAGADGKKGNS VFAAPSFLGGKNQMPMAYSPDTKLFYVPSNEWGMEIWNEPVTYKKGAAYLGAGFTIKTINDEYIGAMRAIDPKTGKTVWE VKNNAPLWGGVLTTAGNLVFWGTPEGFLKAADAKTGKVVWEFQTGSGVVAPPVTWQQDGEQYVSVVSGWGGAVPLWGGDV AKKVNFLEQGGTVWVFKLPK
Sequences:
>Translated_580_residues MRLHLLSLLVAAACASVGAQAAGVTDAMIDNDAKTPNDVLSWGIGSQGQRYSPLKQVNTSTVQKLVPAWAFSFGGEKQRG QQSQPLIHDGKMFVTASYSRIYALDVKTGTKLWKYEHRLPEGIMPCCDVINRGAALYDNLVIFGTLDAQLVALDQKTGDV VWKEKIDDYAAGYSYTAAPLIAGGLLLTGVSGGEFGIVGRVEARDPKTGKMVWIRPTVEGHMGYKFDKDGNKTEIGISGT TGKTWPGDMWKSGGAATWLGGTYDAKTGLAYFGTGNPGPWNSHLRPGDNLFSCATVAIDVKTGQIKWHYQTTPHDGWDFD GVNEFVTFDMDGKRVGGKADRNGFFYVIDAANGKLENAFPFVKKITWATGIDLKTGRPNYVPENRPGDPTAGADGKKGNS VFAAPSFLGGKNQMPMAYSPDTKLFYVPSNEWGMEIWNEPVTYKKGAAYLGAGFTIKTINDEYIGAMRAIDPKTGKTVWE VKNNAPLWGGVLTTAGNLVFWGTPEGFLKAADAKTGKVVWEFQTGSGVVAPPVTWQQDGEQYVSVVSGWGGAVPLWGGDV AKKVNFLEQGGTVWVFKLPK >Mature_580_residues MRLHLLSLLVAAACASVGAQAAGVTDAMIDNDAKTPNDVLSWGIGSQGQRYSPLKQVNTSTVQKLVPAWAFSFGGEKQRG QQSQPLIHDGKMFVTASYSRIYALDVKTGTKLWKYEHRLPEGIMPCCDVINRGAALYDNLVIFGTLDAQLVALDQKTGDV VWKEKIDDYAAGYSYTAAPLIAGGLLLTGVSGGEFGIVGRVEARDPKTGKMVWIRPTVEGHMGYKFDKDGNKTEIGISGT TGKTWPGDMWKSGGAATWLGGTYDAKTGLAYFGTGNPGPWNSHLRPGDNLFSCATVAIDVKTGQIKWHYQTTPHDGWDFD GVNEFVTFDMDGKRVGGKADRNGFFYVIDAANGKLENAFPFVKKITWATGIDLKTGRPNYVPENRPGDPTAGADGKKGNS VFAAPSFLGGKNQMPMAYSPDTKLFYVPSNEWGMEIWNEPVTYKKGAAYLGAGFTIKTINDEYIGAMRAIDPKTGKTVWE VKNNAPLWGGVLTTAGNLVFWGTPEGFLKAADAKTGKVVWEFQTGSGVVAPPVTWQQDGEQYVSVVSGWGGAVPLWGGDV AKKVNFLEQGGTVWVFKLPK
Specific function: Catalyzes the oxidation of primary alcohols except for methanol that is a very poor substrate [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR017512 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.2.8 [H]
Molecular weight: Translated: 62637; Mature: 62637
Theoretical pI: Translated: 8.48; Mature: 8.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLHLLSLLVAAACASVGAQAAGVTDAMIDNDAKTPNDVLSWGIGSQGQRYSPLKQVNTS CCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCHH TVQKLVPAWAFSFGGEKQRGQQSQPLIHDGKMFVTASYSRIYALDVKTGTKLWKYEHRLP HHHHHHHHHHHHCCCCHHCCCCCCCEEECCEEEEEEECCEEEEEEECCCCCHHHHHHCCC EGIMPCCDVINRGAALYDNLVIFGTLDAQLVALDQKTGDVVWKEKIDDYAAGYSYTAAPL CCHHHHHHHHHCCCHHHCCEEEEEECCEEEEEEECCCCCEEEHHHHHHHHCCCCCCHHHH IAGGLLLTGVSGGEFGIVGRVEARDPKTGKMVWIRPTVEGHMGYKFDKDGNKTEIGISGT HHCCEEEEECCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEEEECC TGKTWPGDMWKSGGAATWLGGTYDAKTGLAYFGTGNPGPWNSHLRPGDNLFSCATVAIDV CCCCCCCHHHCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEE KTGQIKWHYQTTPHDGWDFDGVNEFVTFDMDGKRVGGKADRNGFFYVIDAANGKLENAFP EECEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCH FVKKITWATGIDLKTGRPNYVPENRPGDPTAGADGKKGNSVFAAPSFLGGKNQMPMAYSP HHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECC DTKLFYVPSNEWGMEIWNEPVTYKKGAAYLGAGFTIKTINDEYIGAMRAIDPKTGKTVWE CCEEEEEECCCCCHHHCCCCCCCCCCCEEEECCEEEEECCHHHHHHHHCCCCCCCCEEEE VKNNAPLWGGVLTTAGNLVFWGTPEGFLKAADAKTGKVVWEFQTGSGVVAPPVTWQQDGE ECCCCCEECCHHHCCCCEEEECCCHHHEEECCCCCCEEEEEEECCCCEECCCCCCCCCCH QYVSVVSGWGGAVPLWGGDVAKKVNFLEQGGTVWVFKLPK HHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCC >Mature Secondary Structure MRLHLLSLLVAAACASVGAQAAGVTDAMIDNDAKTPNDVLSWGIGSQGQRYSPLKQVNTS CCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCHH TVQKLVPAWAFSFGGEKQRGQQSQPLIHDGKMFVTASYSRIYALDVKTGTKLWKYEHRLP HHHHHHHHHHHHCCCCHHCCCCCCCEEECCEEEEEEECCEEEEEEECCCCCHHHHHHCCC EGIMPCCDVINRGAALYDNLVIFGTLDAQLVALDQKTGDVVWKEKIDDYAAGYSYTAAPL CCHHHHHHHHHCCCHHHCCEEEEEECCEEEEEEECCCCCEEEHHHHHHHHCCCCCCHHHH IAGGLLLTGVSGGEFGIVGRVEARDPKTGKMVWIRPTVEGHMGYKFDKDGNKTEIGISGT HHCCEEEEECCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEEEECC TGKTWPGDMWKSGGAATWLGGTYDAKTGLAYFGTGNPGPWNSHLRPGDNLFSCATVAIDV CCCCCCCHHHCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEE KTGQIKWHYQTTPHDGWDFDGVNEFVTFDMDGKRVGGKADRNGFFYVIDAANGKLENAFP EECEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCH FVKKITWATGIDLKTGRPNYVPENRPGDPTAGADGKKGNSVFAAPSFLGGKNQMPMAYSP HHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECC DTKLFYVPSNEWGMEIWNEPVTYKKGAAYLGAGFTIKTINDEYIGAMRAIDPKTGKTVWE CCEEEEEECCCCCHHHCCCCCCCCCCCEEEECCEEEEECCHHHHHHHHCCCCCCCCEEEE VKNNAPLWGGVLTTAGNLVFWGTPEGFLKAADAKTGKVVWEFQTGSGVVAPPVTWQQDGE ECCCCCEECCHHHCCCCEEEECCCHHHEEECCCCCCEEEEEEECCCCEECCCCCCCCCCH QYVSVVSGWGGAVPLWGGDVAKKVNFLEQGGTVWVFKLPK HHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9826187; 10984043; 10075429; 10736230 [H]