Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

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The map label for this gene is yedZ [H]

Identifier: 124265630

GI number: 124265630

Start: 476790

End: 477443

Strand: Direct

Name: yedZ [H]

Synonym: Mpe_A0437

Alternate gene names: 124265630

Gene position: 476790-477443 (Clockwise)

Preceding gene: 124265629

Following gene: 124265632

Centisome position: 11.79

GC content: 70.64

Gene sequence:

>654_bases
ATGAGCGCCACGCTGCCGGCGCCCCGGGGTGCGCGCCGCAACGCATCGGTGCTGCTGCGGCCAGCCGCCAAGCCACTGCT
GTTCGTGGCGAGCCTGCTGCCGCTCGCCTGGCTGCTCTACGGCGCCCTGGCCAACACGCTGGGCGCCAACCCGGCCGAGG
CGCTGATCCGCGCCACCGGCGACTGGACGCTGCGCTTCCTCTGCCTCACGCTGGCCGTCACGCCGCTGCGGCAATGGACC
GGCCAGCCGGCTTTGCTGCGCTTTCGGCGTATGCTGGGCCTGTTCACCTTCTTCTACGGCGTGCTGCACTTCCTCTGCTA
CGCTTGGCTGGACATGGGCTTCGATCTCGCCGAGATCACGCGCGACATCCCGAAGCGGCCGTTCGCGCTGGTCGGCTTCG
CCGCCCTGCTACTGATGGCGCCGCTGGCGGCCACCTCGTTCAACCGCGCAATCCGGGCGCTGGGCGCGAAACGCTGGCAG
GCGCTGCACCGGCTTGTCTACGCCGTGGCGCTGCTAGCGATCCTGCACTTCTTCTGGATGCGCTCGGCCAAGCACAACTA
TGCCGAGGTCGCGGTCTACGCGGCCATCCTCGCGGTGCTGCTGGGCTGGCGCCTGGTCGCGCACCTGCGGCGCCGGCCGG
TCGCCGCAGGTTGA

Upstream 100 bases:

>100_bases
GCATCTTCCAGAAGAAGCGCCCGACGCAGATGTTCAACGGCTACGAGGCGCAGGTCGGTCAGCTCTACGCGGGCCTCGAT
CTCGCCAAGAACTTCTGACG

Downstream 100 bases:

>100_bases
CGGCGGAGGCTCAGCTGCGCGGGATCTCGCGCGGGCTGCCGTCCATGTTGATCGCCACGTAGGTCAGGTTGGCCTCGGTC
ACCTTGACCACCACCGGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: Flavocytochrome yedZ [H]

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSATLPAPRGARRNASVLLRPAAKPLLFVASLLPLAWLLYGALANTLGANPAEALIRATGDWTLRFLCLTLAVTPLRQWT
GQPALLRFRRMLGLFTFFYGVLHFLCYAWLDMGFDLAEITRDIPKRPFALVGFAALLLMAPLAATSFNRAIRALGAKRWQ
ALHRLVYAVALLAILHFFWMRSAKHNYAEVAVYAAILAVLLGWRLVAHLRRRPVAAG

Sequences:

>Translated_217_residues
MSATLPAPRGARRNASVLLRPAAKPLLFVASLLPLAWLLYGALANTLGANPAEALIRATGDWTLRFLCLTLAVTPLRQWT
GQPALLRFRRMLGLFTFFYGVLHFLCYAWLDMGFDLAEITRDIPKRPFALVGFAALLLMAPLAATSFNRAIRALGAKRWQ
ALHRLVYAVALLAILHFFWMRSAKHNYAEVAVYAAILAVLLGWRLVAHLRRRPVAAG
>Mature_216_residues
SATLPAPRGARRNASVLLRPAAKPLLFVASLLPLAWLLYGALANTLGANPAEALIRATGDWTLRFLCLTLAVTPLRQWTG
QPALLRFRRMLGLFTFFYGVLHFLCYAWLDMGFDLAEITRDIPKRPFALVGFAALLLMAPLAATSFNRAIRALGAKRWQA
LHRLVYAVALLAILHFFWMRSAKHNYAEVAVYAAILAVLLGWRLVAHLRRRPVAAG

Specific function: Is probably involved in the electron transfer between its heme and the molybdenum cofactor of the reductase catalytic subunit yedY [H]

COG id: COG2717

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yedZ family [H]

Homologues:

Organism=Escherichia coli, GI1788283, Length=157, Percent_Identity=40.1273885350318, Blast_Score=107, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013130
- InterPro:   IPR022837 [H]

Pfam domain/function: PF01794 Ferric_reduct [H]

EC number: NA

Molecular weight: Translated: 24118; Mature: 23987

Theoretical pI: Translated: 12.03; Mature: 12.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATLPAPRGARRNASVLLRPAAKPLLFVASLLPLAWLLYGALANTLGANPAEALIRATG
CCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
DWTLRFLCLTLAVTPLRQWTGQPALLRFRRMLGLFTFFYGVLHFLCYAWLDMGFDLAEIT
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RDIPKRPFALVGFAALLLMAPLAATSFNRAIRALGAKRWQALHRLVYAVALLAILHFFWM
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSAKHNYAEVAVYAAILAVLLGWRLVAHLRRRPVAAG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SATLPAPRGARRNASVLLRPAAKPLLFVASLLPLAWLLYGALANTLGANPAEALIRATG
CCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
DWTLRFLCLTLAVTPLRQWTGQPALLRFRRMLGLFTFFYGVLHFLCYAWLDMGFDLAEIT
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RDIPKRPFALVGFAALLLMAPLAATSFNRAIRALGAKRWQALHRLVYAVALLAILHFFWM
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSAKHNYAEVAVYAAILAVLLGWRLVAHLRRRPVAAG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Mo [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA