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The map label for this gene is ccsA [H]

Identifier: 124265627

GI number: 124265627

Start: 473834

End: 475255

Strand: Direct

Name: ccsA [H]

Synonym: Mpe_A0434

Alternate gene names: 124265627

Gene position: 473834-475255 (Clockwise)

Preceding gene: 124265626

Following gene: 124265628

Centisome position: 11.72

GC content: 68.5

Gene sequence:

>1422_bases
ATGAACACCACCACGCCCCCCGCCATGCTGACGATCGGTCGCGGCGGCTACTTCGCCCGGCGCAGCGCCTTCGACTGGAT
CTTCGCGCTGCTGGTCGTGGCCGGTGCCGGCTATGCCTTCCAGCGCTATGGCAGCCACATGGACGGCTACGAACTCGGCA
TCCTCGCCGGCGCGACACCGCTGGTCATCGGCCTGGGCTGGTTCTGGGGCCCGCTGCGGGGCCTGGCGATCGCCGTCGCG
CTGGCCAGCTTCCTCGCGATCGGCCTCTACAGCCGCACCACCGACGGCTTCGGTGCCGACCTCGAGGCCGGGCAGCAGCT
GTTCCTGCTGAAGTACCTGTTCGCGAGCCAGACGGCGATCCTGTGGATGTGCACGCTGTTCTTCATGAGCACGCTGTTCT
ACTGGATCGGTTTCTTCAAGCAGCGCGACAGCCAGGCCACGGCCGAGAAGATCGGCTCGCTGCTGGCCTGGGGCGCGGTG
TTCATGGCGCTCACCGGCACCATGGTGCGCTGGTACGAGAGCCACCAGATCGGCGCCGACATCGGCCACATCCCGGTCAG
CAACCTCTACGAGGTGTTCGTGCTGTTCGCCTGGATGACGGCGCTGTTCTACCTGTACTTCGAGGCCAACTACCTGCAGC
GCGCCGCCAGCACGGCCAGCGGCCAGGCCGCCAATGCCGGCAGCGGTGAGGGCAGCGTGCGCTCGCTCGGTGCCTTCGTG
ATGCTGATCGTCAGCGCGTCGGTCGGCTTCCTGCTCTGGTACACGGTGGCGCGCGAGGCGCAGGAGATCCAGCCGCTGGT
GCCGGCGCTGCAGAGCTGGTGGATGAAGGTGCATGTGCCGGCCAACTTCGTCGGCTACGGCACCTTCGCGCTGGCCGCGA
TGGTCGCCTGGGCCTACCTGCTGAAGACGGCCGCGACGCGGGCCCTGGTGACCGCTTTCATCGTCCTGCCGGTGGGCTTG
CTGGCGGTGCTGGGGGCCTTTGCGGCGTTCGCGCCGCTGCAGGCCGAAACGGTGGGTTCGCTCGGCTCGGCGATGCGCCT
GATCGGCGGCGTCGGCGCCTTCTTCGCGCTGACGCTGGCGCTGCGCCGGCCGATCGTCGCCAAGCTGCCGGCGCTGGAAC
TGCTCGACGACGTGATGTACCGCGCCATCGCGGTCGGCTTCGCTTTCTTCACGATCGCGACCGTGCTCGGCGCGCTGTGG
GCCGCCGAGGCCTGGGGCGGCTACTGGAGCTGGGACCCGAAGGAGACCTGGGCGCTGATCGTCTGGCTCAACTACGCGGC
CTGGCTGCACATGCGGCTGATGAAGGGGCTGCGCGGCACGGTGGCTGCCTGGTGGGCGCTGGTCGGCCTGGTGGTCACCA
CCTTTGCCTTCCTCGGCGTGAACATGTTCCTGTCGGGCCTGCACTCCTACGGGCAGTTGTAA

Upstream 100 bases:

>100_bases
GCACGCGCCTGACCGCCGCGCTGTCGTCGACCCGGCAGACGCTCGACACCGACCGTGAGTTCGAGCAGATACGCGACAGC
CTCCTAGCGAAGGAAAGCGC

Downstream 100 bases:

>100_bases
GCGGCAGGACGCTGCGCCGATTAAAGTCGGCAGCGTCATGCCCTATGCCTTGCGCCACGCCGACGGCCGCGTCCTAAGCC
TGCACCGCCACCCGGAAGCG

Product: putative cytochrome c asssembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MNTTTPPAMLTIGRGGYFARRSAFDWIFALLVVAGAGYAFQRYGSHMDGYELGILAGATPLVIGLGWFWGPLRGLAIAVA
LASFLAIGLYSRTTDGFGADLEAGQQLFLLKYLFASQTAILWMCTLFFMSTLFYWIGFFKQRDSQATAEKIGSLLAWGAV
FMALTGTMVRWYESHQIGADIGHIPVSNLYEVFVLFAWMTALFYLYFEANYLQRAASTASGQAANAGSGEGSVRSLGAFV
MLIVSASVGFLLWYTVAREAQEIQPLVPALQSWWMKVHVPANFVGYGTFALAAMVAWAYLLKTAATRALVTAFIVLPVGL
LAVLGAFAAFAPLQAETVGSLGSAMRLIGGVGAFFALTLALRRPIVAKLPALELLDDVMYRAIAVGFAFFTIATVLGALW
AAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALVGLVVTTFAFLGVNMFLSGLHSYGQL

Sequences:

>Translated_473_residues
MNTTTPPAMLTIGRGGYFARRSAFDWIFALLVVAGAGYAFQRYGSHMDGYELGILAGATPLVIGLGWFWGPLRGLAIAVA
LASFLAIGLYSRTTDGFGADLEAGQQLFLLKYLFASQTAILWMCTLFFMSTLFYWIGFFKQRDSQATAEKIGSLLAWGAV
FMALTGTMVRWYESHQIGADIGHIPVSNLYEVFVLFAWMTALFYLYFEANYLQRAASTASGQAANAGSGEGSVRSLGAFV
MLIVSASVGFLLWYTVAREAQEIQPLVPALQSWWMKVHVPANFVGYGTFALAAMVAWAYLLKTAATRALVTAFIVLPVGL
LAVLGAFAAFAPLQAETVGSLGSAMRLIGGVGAFFALTLALRRPIVAKLPALELLDDVMYRAIAVGFAFFTIATVLGALW
AAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALVGLVVTTFAFLGVNMFLSGLHSYGQL
>Mature_473_residues
MNTTTPPAMLTIGRGGYFARRSAFDWIFALLVVAGAGYAFQRYGSHMDGYELGILAGATPLVIGLGWFWGPLRGLAIAVA
LASFLAIGLYSRTTDGFGADLEAGQQLFLLKYLFASQTAILWMCTLFFMSTLFYWIGFFKQRDSQATAEKIGSLLAWGAV
FMALTGTMVRWYESHQIGADIGHIPVSNLYEVFVLFAWMTALFYLYFEANYLQRAASTASGQAANAGSGEGSVRSLGAFV
MLIVSASVGFLLWYTVAREAQEIQPLVPALQSWWMKVHVPANFVGYGTFALAAMVAWAYLLKTAATRALVTAFIVLPVGL
LAVLGAFAAFAPLQAETVGSLGSAMRLIGGVGAFFALTLALRRPIVAKLPALELLDDVMYRAIAVGFAFFTIATVLGALW
AAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALVGLVVTTFAFLGVNMFLSGLHSYGQL

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 51456; Mature: 51456

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTTTPPAMLTIGRGGYFARRSAFDWIFALLVVAGAGYAFQRYGSHMDGYELGILAGATP
CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHCCCHH
LVIGLGWFWGPLRGLAIAVALASFLAIGLYSRTTDGFGADLEAGQQLFLLKYLFASQTAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LWMCTLFFMSTLFYWIGFFKQRDSQATAEKIGSLLAWGAVFMALTGTMVRWYESHQIGAD
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
IGHIPVSNLYEVFVLFAWMTALFYLYFEANYLQRAASTASGQAANAGSGEGSVRSLGAFV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
MLIVSASVGFLLWYTVAREAQEIQPLVPALQSWWMKVHVPANFVGYGTFALAAMVAWAYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHH
LKTAATRALVTAFIVLPVGLLAVLGAFAAFAPLQAETVGSLGSAMRLIGGVGAFFALTLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRRPIVAKLPALELLDDVMYRAIAVGFAFFTIATVLGALWAAEAWGGYWSWDPKETWALI
HHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
VWLNYAAWLHMRLMKGLRGTVAAWWALVGLVVTTFAFLGVNMFLSGLHSYGQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA