Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

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The map label for this gene is 124265496

Identifier: 124265496

GI number: 124265496

Start: 328124

End: 328906

Strand: Direct

Name: 124265496

Synonym: Mpe_A0303

Alternate gene names: NA

Gene position: 328124-328906 (Clockwise)

Preceding gene: 124265495

Following gene: 124265497

Centisome position: 8.11

GC content: 71.9

Gene sequence:

>783_bases
ATGGTCTGGGATGAACGACAGGCCGCGATGCTGGCGGAGATGGGCATCCGTGTGTGGCAAGCGCCTGCGGCTGCGGCTTC
GCCCGTGATCGATGCGAAGGTCGAGGCAGCGGTCAGCCCGGTCGCCGCCGCCTCGCCCGCCCCGGTGGTACCGCGGGTCG
CCGTCGCACGCGGTGCCCGCCCCGAAGATGTCGAGGCGATGGACTGGCCGACCCTGCGTGCCGCCGTCGCCGGTTGCACC
GCCTGCGGGCTGTGCCGCGGTCGCACGAACACGGTGTTCGGCGTCGGGCACACGCAGGCGCACTGGATGGTCGTCGGCGA
GGCGCCGGGCGAACAGGAAGACCGCCTGGGCGAGCCCTTCGTCGGCAAGGCCGGGCAGTTGCTCGACCACATGCTGCAGG
CCCTGGGCCTGACGCGCCGGGCCGAAGGCGAGGGACTGCAGCCGGCGCAGCAGGTCTACATCGCCAACGTGCTGAAGTGC
CGGCCGCCGATGAACCGCAATCCGCAGCCCGAGGAAGTGGCGCAGTGCGAGCCCTACCTGGCCCGCCAGGTGGCGCTGCT
GCAGCCGCGGCTGATTCTCGCGATGGGCCGCTTCGCGGTGCAATCGCTGCTGCAGACCGGTGAACCGATCGGCCGCCTGC
GGGGCCGGATCCACCAGTACCAGGGGGTGCCCGCCATCGTGACCTATCACCCCGCCTACCTGCTGCGCAACCCGGCCGAC
AAGGCGAAGGCCTGGGACGACCTCTGTCTTGCGCGCGAGGTGATGCGCGGCGCGCGCCCCTGA

Upstream 100 bases:

>100_bases
GGCTTCCGCAATGTCGGCCTGCGCCGTGGCTACTACCCGGCCCGCGGGCGGGCGCGCGAGGACGCGGTGGTGATGAGCCT
GCAGATTCCAGAGGCGGTGC

Downstream 100 bases:

>100_bases
CGCCGGCACAGGCTGCCGCAGGGTTCGGCCGAATCGACCGGCTGCCCCGGCGCGCCTACCCTCGGCCATGGGCGCCGTTG
TGCCAAGGCTCACCGAGGAC

Product: putative DNA polymerase-like protein

Products: diphosphate; DNAn+1

Alternate protein names: Uracil-DNA Glycosylase; Phage SPO1 DNA Polymerase-Like Protein; DNA Polymerase; DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily Protein; DNA-Directed DNA Polymerase; DNA Polymerase-Related Protein Bacteriophage-Type; DNA Glycosylase; Uracil-DNA Glycosylase Family 4 Protein; Phage Spo1 DNA Polymerase-Related Protein; DNA Polymerase-Related Protein; Bacteriophage-Related DNA Polymerase; N-Terminus Of Bacteriophage-Type DNA Polymerase; Phage DNA Polymerase; Phage SPO1 DNA Polymerase Domain-Containing Protein; DNA Polymerase Domain-Containing Protein; Phage Related DNA Polymerase; Uracil-DNA Glycosylase C-Terminal; Phage SpO1 DNA Polymerase-Related Protein; Arginine Biosynthesis Bifunctional Protein ArgJ; Bacteriophage-Type DNA Polymerase; DNA Polymerase Related Protein; Uracil DNA Glycosylase; Phage DNA Polymerase-Related Protein; DNA-Directed DNA Polymerase Bacteriophage-Type; Uracil-DNA Glycosylase Phage-Related Protein; Phage Shock Protein E; C-Terminal Part Of DNA Polymerase Bacteriophage-Type; Phage Spo1 DNA Polymerase Domain Protein; Uracil-DNA Glycosylase C-Terminal Domain Protein; Uracil-DNA Glycosylase-Like Protein; Uracil-DNA Glycosylase-Related Protein; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein; N-Terminus Of Phage SPO1 DNA Polymerase

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MVWDERQAAMLAEMGIRVWQAPAAAASPVIDAKVEAAVSPVAAASPAPVVPRVAVARGARPEDVEAMDWPTLRAAVAGCT
ACGLCRGRTNTVFGVGHTQAHWMVVGEAPGEQEDRLGEPFVGKAGQLLDHMLQALGLTRRAEGEGLQPAQQVYIANVLKC
RPPMNRNPQPEEVAQCEPYLARQVALLQPRLILAMGRFAVQSLLQTGEPIGRLRGRIHQYQGVPAIVTYHPAYLLRNPAD
KAKAWDDLCLAREVMRGARP

Sequences:

>Translated_260_residues
MVWDERQAAMLAEMGIRVWQAPAAAASPVIDAKVEAAVSPVAAASPAPVVPRVAVARGARPEDVEAMDWPTLRAAVAGCT
ACGLCRGRTNTVFGVGHTQAHWMVVGEAPGEQEDRLGEPFVGKAGQLLDHMLQALGLTRRAEGEGLQPAQQVYIANVLKC
RPPMNRNPQPEEVAQCEPYLARQVALLQPRLILAMGRFAVQSLLQTGEPIGRLRGRIHQYQGVPAIVTYHPAYLLRNPAD
KAKAWDDLCLAREVMRGARP
>Mature_260_residues
MVWDERQAAMLAEMGIRVWQAPAAAASPVIDAKVEAAVSPVAAASPAPVVPRVAVARGARPEDVEAMDWPTLRAAVAGCT
ACGLCRGRTNTVFGVGHTQAHWMVVGEAPGEQEDRLGEPFVGKAGQLLDHMLQALGLTRRAEGEGLQPAQQVYIANVLKC
RPPMNRNPQPEEVAQCEPYLARQVALLQPRLILAMGRFAVQSLLQTGEPIGRLRGRIHQYQGVPAIVTYHPAYLLRNPAD
KAKAWDDLCLAREVMRGARP

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 28126; Mature: 28126

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVWDERQAAMLAEMGIRVWQAPAAAASPVIDAKVEAAVSPVAAASPAPVVPRVAVARGAR
CCCCHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCHHCCCCCCCCCHHHHHCCCC
PEDVEAMDWPTLRAAVAGCTACGLCRGRTNTVFGVGHTQAHWMVVGEAPGEQEDRLGEPF
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCCCCHHHHCCCCC
VGKAGQLLDHMLQALGLTRRAEGEGLQPAQQVYIANVLKCRPPMNRNPQPEEVAQCEPYL
CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHH
ARQVALLQPRLILAMGRFAVQSLLQTGEPIGRLRGRIHQYQGVPAIVTYHPAYLLRNPAD
HHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCHHHHCCCHH
KAKAWDDLCLAREVMRGARP
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVWDERQAAMLAEMGIRVWQAPAAAASPVIDAKVEAAVSPVAAASPAPVVPRVAVARGAR
CCCCHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCHHCCCCCCCCCHHHHHCCCC
PEDVEAMDWPTLRAAVAGCTACGLCRGRTNTVFGVGHTQAHWMVVGEAPGEQEDRLGEPF
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCCCCHHHHCCCCC
VGKAGQLLDHMLQALGLTRRAEGEGLQPAQQVYIANVLKCRPPMNRNPQPEEVAQCEPYL
CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHH
ARQVALLQPRLILAMGRFAVQSLLQTGEPIGRLRGRIHQYQGVPAIVTYHPAYLLRNPAD
HHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCHHHHCCCHH
KAKAWDDLCLAREVMRGARP
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA