Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

Click here to switch to the map view.

The map label for this gene is 124265369

Identifier: 124265369

GI number: 124265369

Start: 190794

End: 191924

Strand: Direct

Name: 124265369

Synonym: Mpe_A0176

Alternate gene names: NA

Gene position: 190794-191924 (Clockwise)

Preceding gene: 124265367

Following gene: 124265370

Centisome position: 4.72

GC content: 69.5

Gene sequence:

>1131_bases
ATGAGCAACAAGAAGCCCGTCGTCGTCTACGGCGCCTCCGGCTACACCGGCCGCCTGATCTGCGAATACCTTCGCGAGTA
CGGCATCCCGTTCATCGCCGCGGGTCGCAGCGCGGACAAGCTGCAGACGGCGATGCAGTCCAACGTGCCGGGCATCGAGA
CCGCGAGCTACGAGATCGCCGAGGTGCCGCACAGCGTCGCGGCGCTGACCGAGCTGTTCCGCGGCGCGTCGGTGGTGCTG
AACACCGTCGGACCGTTCGCGAAGTTCGGCCCGGAGGTCGTCGAGGCCTGCCTGGCCGCCCGCTGTCACTACACCGACAC
CACCGGCGAGCAGGACTGGCTGATCACGCTCGACGAACAGTACGGCGCCCAGTTCGCCGCCGCCGGCCTGCTGCTGTCGC
CCGGCCTGGCGCACATGTACACCACCGGCGAGATCGCCGCGCAGCTGTGCCTCGAGACGCCGGGGCTCGACACGCTCGAC
ATCGCCGTGTTCTGGGGCGGCAGCCCGACGATCGCGTCGACGCAGACCATCCTGGTCAATGCTGCGACGTCCAAGGCCTA
CTACCTCGACCAGAACAGGTACGTCGAGTGGCAGCCCGACGCGGGTCTCTACAACGTGACCATCCCGGGCCAGCACGAGG
CCGCGCTGGCGCTGCCCTGGGGCGGCACCTCGCATCCGGTGTGGTTCAAGCGCGACCCGCGTGTGGCCACCGTCAAGGTG
CTGGGCGGCGTGTTCAACAAGCCGCTGATGCAGGGCGTGCCGCTGATCGTCGCGGCGGCGCTGAAGGCGACCGAGGGCAT
GAACCCCGAGGAGCGCTACGCGGCGCTGGCCCAGACGGCCGCCGGCGTGATGAACACCATGCCACCACGCGAGAACCCGC
GTCTCAACAAGTCGGTCGACTCGGTCCACGCGTCCGGCCCGCTGGCGCGCGCGCACTGCGTGATCTTCGGCAACTGCAAC
TACAAGCAGACCGGGTTGCTGCAGGCGTTTGCGGCGGCCTCGCTGCTGCAGCAGGCGCCCCGGCGCGTCGGCTTCGCCTC
CGGCTGCCAGGCCTTCGGACATCACGAACTGCTCGGCGCCCTGCGCAGCTTCGGCCTGGTGCAGGCGCCGATCCTGACCG
TCCACCGCTAG

Upstream 100 bases:

>100_bases
CGGAGAATCTGGACGACTGTCCAAAAAATACTTGACGCTTGTCAAGGCCACTCCTAGCATGCATCGAACGGTCGGCCTCC
ACGACCGACGAGGAGACAGC

Downstream 100 bases:

>100_bases
GCCGCGCGATGCGACTGGTCGACTACCTCGACAAGGGCGCCCAACTCGGCGCTGACGCGCCCTGCCTGACCATGGGCGAC
GCCGACCTGAGCTACGCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: Saccharopine Dehydrogenase Family Protein; Saccharopine DehydrogenaseNmrA-Like

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MSNKKPVVVYGASGYTGRLICEYLREYGIPFIAAGRSADKLQTAMQSNVPGIETASYEIAEVPHSVAALTELFRGASVVL
NTVGPFAKFGPEVVEACLAARCHYTDTTGEQDWLITLDEQYGAQFAAAGLLLSPGLAHMYTTGEIAAQLCLETPGLDTLD
IAVFWGGSPTIASTQTILVNAATSKAYYLDQNRYVEWQPDAGLYNVTIPGQHEAALALPWGGTSHPVWFKRDPRVATVKV
LGGVFNKPLMQGVPLIVAAALKATEGMNPEERYAALAQTAAGVMNTMPPRENPRLNKSVDSVHASGPLARAHCVIFGNCN
YKQTGLLQAFAAASLLQQAPRRVGFASGCQAFGHHELLGALRSFGLVQAPILTVHR

Sequences:

>Translated_376_residues
MSNKKPVVVYGASGYTGRLICEYLREYGIPFIAAGRSADKLQTAMQSNVPGIETASYEIAEVPHSVAALTELFRGASVVL
NTVGPFAKFGPEVVEACLAARCHYTDTTGEQDWLITLDEQYGAQFAAAGLLLSPGLAHMYTTGEIAAQLCLETPGLDTLD
IAVFWGGSPTIASTQTILVNAATSKAYYLDQNRYVEWQPDAGLYNVTIPGQHEAALALPWGGTSHPVWFKRDPRVATVKV
LGGVFNKPLMQGVPLIVAAALKATEGMNPEERYAALAQTAAGVMNTMPPRENPRLNKSVDSVHASGPLARAHCVIFGNCN
YKQTGLLQAFAAASLLQQAPRRVGFASGCQAFGHHELLGALRSFGLVQAPILTVHR
>Mature_375_residues
SNKKPVVVYGASGYTGRLICEYLREYGIPFIAAGRSADKLQTAMQSNVPGIETASYEIAEVPHSVAALTELFRGASVVLN
TVGPFAKFGPEVVEACLAARCHYTDTTGEQDWLITLDEQYGAQFAAAGLLLSPGLAHMYTTGEIAAQLCLETPGLDTLDI
AVFWGGSPTIASTQTILVNAATSKAYYLDQNRYVEWQPDAGLYNVTIPGQHEAALALPWGGTSHPVWFKRDPRVATVKVL
GGVFNKPLMQGVPLIVAAALKATEGMNPEERYAALAQTAAGVMNTMPPRENPRLNKSVDSVHASGPLARAHCVIFGNCNY
KQTGLLQAFAAASLLQQAPRRVGFASGCQAFGHHELLGALRSFGLVQAPILTVHR

Specific function: Unknown

COG id: COG3268

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI55770836, Length=139, Percent_Identity=31.6546762589928, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI32567112, Length=138, Percent_Identity=32.6086956521739, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560066, Length=138, Percent_Identity=32.6086956521739, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40185; Mature: 40054

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKKPVVVYGASGYTGRLICEYLREYGIPFIAAGRSADKLQTAMQSNVPGIETASYEIA
CCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCHHH
EVPHSVAALTELFRGASVVLNTVGPFAKFGPEVVEACLAARCHYTDTTGEQDWLITLDEQ
HCCHHHHHHHHHHCCHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEEECHH
YGAQFAAAGLLLSPGLAHMYTTGEIAAQLCLETPGLDTLDIAVFWGGSPTIASTQTILVN
HCCHHHHHHHHHCCCHHHEEEHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEE
AATSKAYYLDQNRYVEWQPDAGLYNVTIPGQHEAALALPWGGTSHPVWFKRDPRVATVKV
ECCCCEEEECCCCEEEECCCCCEEEEECCCCCCEEEEECCCCCCCCEEEECCCCEEEHHH
LGGVFNKPLMQGVPLIVAAALKATEGMNPEERYAALAQTAAGVMNTMPPRENPRLNKSVD
HHHHHCCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
SVHASGPLARAHCVIFGNCNYKQTGLLQAFAAASLLQQAPRRVGFASGCQAFGHHELLGA
HHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHH
LRSFGLVQAPILTVHR
HHHCCCCCCCEEEECC
>Mature Secondary Structure 
SNKKPVVVYGASGYTGRLICEYLREYGIPFIAAGRSADKLQTAMQSNVPGIETASYEIA
CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCHHH
EVPHSVAALTELFRGASVVLNTVGPFAKFGPEVVEACLAARCHYTDTTGEQDWLITLDEQ
HCCHHHHHHHHHHCCHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEEECHH
YGAQFAAAGLLLSPGLAHMYTTGEIAAQLCLETPGLDTLDIAVFWGGSPTIASTQTILVN
HCCHHHHHHHHHCCCHHHEEEHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEE
AATSKAYYLDQNRYVEWQPDAGLYNVTIPGQHEAALALPWGGTSHPVWFKRDPRVATVKV
ECCCCEEEECCCCEEEECCCCCEEEEECCCCCCEEEEECCCCCCCCEEEECCCCEEEHHH
LGGVFNKPLMQGVPLIVAAALKATEGMNPEERYAALAQTAAGVMNTMPPRENPRLNKSVD
HHHHHCCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
SVHASGPLARAHCVIFGNCNYKQTGLLQAFAAASLLQQAPRRVGFASGCQAFGHHELLGA
HHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHH
LRSFGLVQAPILTVHR
HHHCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA