Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
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Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is 124265351
Identifier: 124265351
GI number: 124265351
Start: 166142
End: 166852
Strand: Direct
Name: 124265351
Synonym: Mpe_A0158
Alternate gene names: NA
Gene position: 166142-166852 (Clockwise)
Preceding gene: 124265348
Following gene: 124265352
Centisome position: 4.11
GC content: 68.35
Gene sequence:
>711_bases ATGAAGTCACCCAAGCCGTCCCTCTCCGTCCAAGCCGTGCTGTTCGACGCGTACGGCACGCTGTTCGACGTCTACAGCGT CGGTACGCTGGCCGAGCAGCTGTTTCCCGGCCAGGGCGAGGCGCTGGCGGTGCTGTGGCGTGACAAGCAGATCGAGTACA CGCGCCTGGTGTCGATGAGCCAGCGCTACCGGCCGTTCTGGGAGCTCACGCGCGCGGGGCTGCGCTACGCCTGCGCGCGG CTGCAGCTCGACCTGACGCCGGAGCGCGAGACCCAGTTGCTCAACCAGTACCGCCACCTCGGTGCCTTTCCCGAGAACAA GGCGGTGCTGACGGCGCTGAAGGCGCGCGGCGTGACCACCGGCATCCTCAGCAACGGCGACCCCGAGATGCTGGGCATCG CGGTGCGCAGCGCCGGCTACGTGGACGACAAGGGCCAGGGCCTGCTCGACCACGTGCTCAGCGTCGAGAGCGTGCAGCGC TTCAAGACCGACCCGGCCGCCTATGCGCTGGGCCCGCAGGCGCTGGGCATTCCGGCCCGGCAGATCCTGTTCGTTTCCAG CAACGGCTGGGACGCGATCGGCGCGACTTGGTACGGTTACTGCACGCTGTGGGTGAACCGCTTCAAGCTGCCGCTCGAGG CCCTCGACACCGAGCCGACGCGCACCGGCAGCAGCCTGCGCGACGTGCTCGACTTCTTTCCCAAGACCTGA
Upstream 100 bases:
>100_bases ATGGGGCGGATTCGGGGCAGATTACTGATGCTTCAGTAAAAGATCAAGCGCAAATCGGTCGCTAAATGCGCACTCAGGTT CGTAATAAAGTGGCCTCTCG
Downstream 100 bases:
>100_bases AACTCCCTGTCCCTAGGAGCTGACCATGACGACCCTCCAACTGCCCGCCGGCCTGCAGATCAACGCGGCGATCCTGCCGG GCTTCGAGACCATCCTCACG
Product: 2-haloacid dehalogenase
Products: NA
Alternate protein names: 2-haloalkanoic acid dehalogenase; Halocarboxylic acid halidohydrolase; L-2-haloacid dehalogenase; L-DEX [H]
Number of amino acids: Translated: 236; Mature: 236
Protein sequence:
>236_residues MKSPKPSLSVQAVLFDAYGTLFDVYSVGTLAEQLFPGQGEALAVLWRDKQIEYTRLVSMSQRYRPFWELTRAGLRYACAR LQLDLTPERETQLLNQYRHLGAFPENKAVLTALKARGVTTGILSNGDPEMLGIAVRSAGYVDDKGQGLLDHVLSVESVQR FKTDPAAYALGPQALGIPARQILFVSSNGWDAIGATWYGYCTLWVNRFKLPLEALDTEPTRTGSSLRDVLDFFPKT
Sequences:
>Translated_236_residues MKSPKPSLSVQAVLFDAYGTLFDVYSVGTLAEQLFPGQGEALAVLWRDKQIEYTRLVSMSQRYRPFWELTRAGLRYACAR LQLDLTPERETQLLNQYRHLGAFPENKAVLTALKARGVTTGILSNGDPEMLGIAVRSAGYVDDKGQGLLDHVLSVESVQR FKTDPAAYALGPQALGIPARQILFVSSNGWDAIGATWYGYCTLWVNRFKLPLEALDTEPTRTGSSLRDVLDFFPKT >Mature_236_residues MKSPKPSLSVQAVLFDAYGTLFDVYSVGTLAEQLFPGQGEALAVLWRDKQIEYTRLVSMSQRYRPFWELTRAGLRYACAR LQLDLTPERETQLLNQYRHLGAFPENKAVLTALKARGVTTGILSNGDPEMLGIAVRSAGYVDDKGQGLLDHVLSVESVQR FKTDPAAYALGPQALGIPARQILFVSSNGWDAIGATWYGYCTLWVNRFKLPLEALDTEPTRTGSSLRDVLDFFPKT
Specific function: Catalyzes the hydrolytic dehalogenation of small (S)-2- haloalkanoic acids to yield the corresponding (R)-2- hydroxyalkanoic acids. Acts on acids of short chain lengths, C(2) to C(4), with inversion of configuration at C-2 [H]
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. S-2- haloalkanoic acid dehalogenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006388 - InterPro: IPR006328 - InterPro: IPR005833 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: =3.8.1.2 [H]
Molecular weight: Translated: 26237; Mature: 26237
Theoretical pI: Translated: 8.17; Mature: 8.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSPKPSLSVQAVLFDAYGTLFDVYSVGTLAEQLFPGQGEALAVLWRDKQIEYTRLVSMS CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHH QRYRPFWELTRAGLRYACARLQLDLTPERETQLLNQYRHLGAFPENKAVLTALKARGVTT HHCCHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEE GILSNGDPEMLGIAVRSAGYVDDKGQGLLDHVLSVESVQRFKTDPAAYALGPQALGIPAR EECCCCCCHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCHHCCCCCE QILFVSSNGWDAIGATWYGYCTLWVNRFKLPLEALDTEPTRTGSSLRDVLDFFPKT EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure MKSPKPSLSVQAVLFDAYGTLFDVYSVGTLAEQLFPGQGEALAVLWRDKQIEYTRLVSMS CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHH QRYRPFWELTRAGLRYACARLQLDLTPERETQLLNQYRHLGAFPENKAVLTALKARGVTT HHCCHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEE GILSNGDPEMLGIAVRSAGYVDDKGQGLLDHVLSVESVQRFKTDPAAYALGPQALGIPAR EECCCCCCHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCHHCCCCCE QILFVSSNGWDAIGATWYGYCTLWVNRFKLPLEALDTEPTRTGSSLRDVLDFFPKT EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7944368; 7490277; 8702766; 9614112 [H]