Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
---|---|
Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is creB [H]
Identifier: 124265328
GI number: 124265328
Start: 140497
End: 141252
Strand: Direct
Name: creB [H]
Synonym: Mpe_A0135
Alternate gene names: 124265328
Gene position: 140497-141252 (Clockwise)
Preceding gene: 124265325
Following gene: 124265329
Centisome position: 3.47
GC content: 72.88
Gene sequence:
>756_bases ATGGCCCGCGCGCAGATCCTGATCGTCGAAGACGAACCCGGCATCGCCGACACGCTGAGCTACGCCCTGCGCACCGAAGG CTTCGAGCCGCTGTGGTGCGCCACCGGCGAGGCGGCGCTGCAGCATCTGCCGCCGCAGGCGCCCGCCCCGGCGCTGGTGA TCCTGGACGTGGGCCTGCCCGACCTCAACGGCTTCGAGCTCTTCAAGCGCATCCGCGAGCGCGCGGCCGATCTGCCCGTC GTCTTCCTTACCGCGCGCAGCGACGAGATCGACCGCGTGGTGGGCCTGGAGCTCGGCGCCGACGACTACGTGGCCAAGCC CTTCTCGCCGCGCGAGCTGGTGGCGCGCGTGCGCACCGTGCTGCGCCGCACGGCACGCGCCTCTGCTTCGCCGCCGCCCA CCACCGTGGCCGGCGCCTTGACGCCGGCCGCTGCCGCGCTTCCAACCCCGATCGACGTGGACGAAGGCCGGCGCCGCATC CGCTACTACGGCCGGCCGCTGGAGCTGTCGCGCTACGAGTACGGCCTGCTCAAGACCCTGGCCGAGCGCCCGGGCCACGT GTACACCCGCGACGTGCTGCTGGAGCGGGTGTGGGACGACCCCGGCGACAGCTTCGACCGCACCGTGGACGCCCACGTGA AGACTCTGCGCGCCAAGCTCAAGGCGGTGGCGCCCACGCTGGAGCCCATCCGCACGCACCGTGGCAGCGGCTACGCGCTG GCCGAAGACCTGCCAGCCGAACTGCCGCGCGCATAG
Upstream 100 bases:
>100_bases GGCAGGCGCGCAGGAAGCGGTCGTTCGCGAGCGGCGGCAGGGAGGCGGTGGGGGTGGCAGTCATCGGTCGATTATCGCGG CCCTATCATCGGCGCCGACC
Downstream 100 bases:
>100_bases ATCGGCCAGCCAGCCAGTGACGAAGCGCAACCGCATCTTCATCGGCATCCTGCTCGCCTATGCGCTGGGCGTGGCGCTGC TGCTGTGGCGGCTGGTGGGC
Product: two component transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MARAQILIVEDEPGIADTLSYALRTEGFEPLWCATGEAALQHLPPQAPAPALVILDVGLPDLNGFELFKRIRERAADLPV VFLTARSDEIDRVVGLELGADDYVAKPFSPRELVARVRTVLRRTARASASPPPTTVAGALTPAAAALPTPIDVDEGRRRI RYYGRPLELSRYEYGLLKTLAERPGHVYTRDVLLERVWDDPGDSFDRTVDAHVKTLRAKLKAVAPTLEPIRTHRGSGYAL AEDLPAELPRA
Sequences:
>Translated_251_residues MARAQILIVEDEPGIADTLSYALRTEGFEPLWCATGEAALQHLPPQAPAPALVILDVGLPDLNGFELFKRIRERAADLPV VFLTARSDEIDRVVGLELGADDYVAKPFSPRELVARVRTVLRRTARASASPPPTTVAGALTPAAAALPTPIDVDEGRRRI RYYGRPLELSRYEYGLLKTLAERPGHVYTRDVLLERVWDDPGDSFDRTVDAHVKTLRAKLKAVAPTLEPIRTHRGSGYAL AEDLPAELPRA >Mature_250_residues ARAQILIVEDEPGIADTLSYALRTEGFEPLWCATGEAALQHLPPQAPAPALVILDVGLPDLNGFELFKRIRERAADLPVV FLTARSDEIDRVVGLELGADDYVAKPFSPRELVARVRTVLRRTARASASPPPTTVAGALTPAAAALPTPIDVDEGRRRIR YYGRPLELSRYEYGLLKTLAERPGHVYTRDVLLERVWDDPGDSFDRTVDAHVKTLRAKLKAVAPTLEPIRTHRGSGYALA EDLPAELPRA
Specific function: Member of the two-component regulatory system CreC/CreB involved in catabolic regulation [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1790860, Length=240, Percent_Identity=50.4166666666667, Blast_Score=227, Evalue=5e-61, Organism=Escherichia coli, GI1788394, Length=239, Percent_Identity=40.5857740585774, Blast_Score=164, Evalue=5e-42, Organism=Escherichia coli, GI1786599, Length=245, Percent_Identity=37.9591836734694, Blast_Score=142, Evalue=2e-35, Organism=Escherichia coli, GI1790552, Length=239, Percent_Identity=35.5648535564854, Blast_Score=127, Evalue=8e-31, Organism=Escherichia coli, GI2367329, Length=237, Percent_Identity=35.8649789029536, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI1787229, Length=241, Percent_Identity=36.9294605809129, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1790863, Length=245, Percent_Identity=33.8775510204082, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI1786784, Length=238, Percent_Identity=35.2941176470588, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1789809, Length=240, Percent_Identity=30.8333333333333, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1787375, Length=233, Percent_Identity=32.1888412017167, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1789402, Length=241, Percent_Identity=35.2697095435685, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1786911, Length=234, Percent_Identity=34.1880341880342, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI87082012, Length=237, Percent_Identity=32.4894514767932, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI145693140, Length=192, Percent_Identity=31.7708333333333, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788550, Length=118, Percent_Identity=35.5932203389831, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1790299, Length=178, Percent_Identity=30.8988764044944, Blast_Score=61, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 27586; Mature: 27455
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARAQILIVEDEPGIADTLSYALRTEGFEPLWCATGEAALQHLPPQAPAPALVILDVGLP CCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHCCCCCCCCEEEEEECCCC DLNGFELFKRIRERAADLPVVFLTARSDEIDRVVGLELGADDYVAKPFSPRELVARVRTV CCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHEEEECCCCCCCCCCCHHHHHHHHHHH LRRTARASASPPPTTVAGALTPAAAALPTPIDVDEGRRRIRYYGRPLELSRYEYGLLKTL HHHHHHCCCCCCCCCHHHHHCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH AERPGHVYTRDVLLERVWDDPGDSFDRTVDAHVKTLRAKLKAVAPTLEPIRTHRGSGYAL HHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEH AEDLPAELPRA HHHCCCCCCCC >Mature Secondary Structure ARAQILIVEDEPGIADTLSYALRTEGFEPLWCATGEAALQHLPPQAPAPALVILDVGLP CCEEEEEEECCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHCCCCCCCCEEEEEECCCC DLNGFELFKRIRERAADLPVVFLTARSDEIDRVVGLELGADDYVAKPFSPRELVARVRTV CCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHEEEECCCCCCCCCCCHHHHHHHHHHH LRRTARASASPPPTTVAGALTPAAAALPTPIDVDEGRRRIRYYGRPLELSRYEYGLLKTL HHHHHHCCCCCCCCCHHHHHCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH AERPGHVYTRDVLLERVWDDPGDSFDRTVDAHVKTLRAKLKAVAPTLEPIRTHRGSGYAL HHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEH AEDLPAELPRA HHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3531171; 7610040; 9278503 [H]