Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
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Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is phnB [H]
Identifier: 124265222
GI number: 124265222
Start: 30888
End: 31310
Strand: Reverse
Name: phnB [H]
Synonym: Mpe_A0029
Alternate gene names: 124265222
Gene position: 31310-30888 (Counterclockwise)
Preceding gene: 124265223
Following gene: 124265221
Centisome position: 0.77
GC content: 68.79
Gene sequence:
>423_bases ATGACCCAAGCCATCGCCTACCTCGGATTCAACGGCAACTGCGCCGACGCCATGCGCTTCTACGAGCGCGCGCTGAACGG CAAGCTCGAAGTGCTGATGAGCGGCGCGGACTCGCCGATGGCCGAGCAGATGCCCAAGCAGTTCCTGCACCGCATCCTGC ATGCCCGCCTGGTGCTGCCCGGCGGCGGCATGCTCTATGCCGGCGACTGCCCGGCCGACCAGCCCTTCGAGGGCATCAAG GGCGTGTCGATCGCCGTGGACTACCCGAGCGTCGACGAGGCCGAGGCCGTGTTCGCGGCGCTGGCCGACGGCGGCCAGGT CACGATGCCGATGCAGCCCGCGTTCTGGGCGCGCCGCTGGGGCATGCTGATCGACAGGTTCGGCACGCCGTGGATCGTCA ACGGCGAGCTGCTGCCGTTCTGA
Upstream 100 bases:
>100_bases CCTTCTACCGCTGAAACCCGCGGGGCTGTCGATTCCGGGGCCGCCCGTTCGTCGTGGTCGTGCAAGCCTGCCACCGACCT TCCTTCCCAGGAGCCCCGAC
Downstream 100 bases:
>100_bases GCCCCGGCACGGCGCGGGCTCCGGGGCGGTGTCGCTATGCGATAACCATAGTTCCCAATCCGCCTCCGAGCGCCTAGGCT GCCGGCTCCCGCCACCCCCT
Product: PhnB protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MTQAIAYLGFNGNCADAMRFYERALNGKLEVLMSGADSPMAEQMPKQFLHRILHARLVLPGGGMLYAGDCPADQPFEGIK GVSIAVDYPSVDEAEAVFAALADGGQVTMPMQPAFWARRWGMLIDRFGTPWIVNGELLPF
Sequences:
>Translated_140_residues MTQAIAYLGFNGNCADAMRFYERALNGKLEVLMSGADSPMAEQMPKQFLHRILHARLVLPGGGMLYAGDCPADQPFEGIK GVSIAVDYPSVDEAEAVFAALADGGQVTMPMQPAFWARRWGMLIDRFGTPWIVNGELLPF >Mature_139_residues TQAIAYLGFNGNCADAMRFYERALNGKLEVLMSGADSPMAEQMPKQFLHRILHARLVLPGGGMLYAGDCPADQPFEGIKG VSIAVDYPSVDEAEAVFAALADGGQVTMPMQPAFWARRWGMLIDRFGTPWIVNGELLPF
Specific function: Unknown
COG id: COG2764
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790546, Length=136, Percent_Identity=32.3529411764706, Blast_Score=75, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15297; Mature: 15166
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 6.4 %Met (Translated Protein) 7.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 5.8 %Met (Mature Protein) 7.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQAIAYLGFNGNCADAMRFYERALNGKLEVLMSGADSPMAEQMPKQFLHRILHARLVLP CCCEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHEEECC GGGMLYAGDCPADQPFEGIKGVSIAVDYPSVDEAEAVFAALADGGQVTMPMQPAFWARRW CCCEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHH GMLIDRFGTPWIVNGELLPF HHHHHHCCCCEEECCCCCCC >Mature Secondary Structure TQAIAYLGFNGNCADAMRFYERALNGKLEVLMSGADSPMAEQMPKQFLHRILHARLVLP CCEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHEEECC GGGMLYAGDCPADQPFEGIKGVSIAVDYPSVDEAEAVFAALADGGQVTMPMQPAFWARRW CCCEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHH GMLIDRFGTPWIVNGELLPF HHHHHHCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 7610040; 9278503 [H]