Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
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Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is 124265209
Identifier: 124265209
GI number: 124265209
Start: 18623
End: 20065
Strand: Reverse
Name: 124265209
Synonym: Mpe_A0016
Alternate gene names: NA
Gene position: 20065-18623 (Counterclockwise)
Preceding gene: 124265212
Following gene: 124265202
Centisome position: 0.5
GC content: 74.5
Gene sequence:
>1443_bases ATGACCGCGCAGCATCCCGCGCCGCCCTTCGACACGTGGCTGTGGATGCAGGCGTGGAGCGAGACCTGGTGCGCCGGGCT CGACCCGGCGGGCGCGGGGCAGCGCCTGCGCGCTCAGCGGCTGGCGCGGCTGATCGACGCCACGCTGAGCGGCTCGCCGT TCTACCGCCGGCGCCACCCCGGAGCGCACGAGCTCGCCGACTTCCGGCCGGTGAGCAAGGCCGAGCTGATGGCGCACTTC GACGACTGGGCCACCGACCGCCGCATCACCCGCGCCGCCGCACAGGCCTTCGTGGCCGACCCGGCGTGCATCGCCGACGG CTGGCTCGGCAACTATCTGCTGTGGACCAGCTCCGGCACCAGCGGCGAGCCCGGCGTGTTCGTGCAGGACGCGCGCAGCC TGGCGGCCTACGACGCGATCGACGCGCTGCGGCTGCGCGGCGCCGGGCCCGGCCAGGTCTCGCTCGGCAGCTGGGGCGCG CGCCAGCGCTTCGCCTTCGTGGGTGCCACCGGCGGCCACTTCGCCGGCGTGGTGAGCATGGAACGGCTGCGCCGTCTGGT GCCGGCCGCGCTGGCACCGGAGATCCGCGTGCTCTCGGTGCTGGAGCCGCTGTGCGACGTGGCGCAGGCGCTGCAGGCCC AGCAGCCCAGCGTGCTGATCACCTACCCGAGCTGCGCCGCCGCGCTGGCCCGGCTGCAGGAGGCCGGACAGCTGCGGCTG GCCCTGAAGGAGGTGTGGACGGGCGGCGAGCAGCTCTCGGCCGAGCAGCGCCAGCAGATCCAGGCCGCCTTCGGCTGCCC GGTGCGCAACAACTACGGCGCCTCGGAGTTCTTCACCATCGCGTGGGAGTGCGCCCACGGCGAGCTGCACCTGAACGACG ACTGGCTGGTGCTGGAGCCGGTGGACGAGCGGCTGCGGCCGTTGCCGGTGGGCGAGATGTCGCACAGCACGCTGCTGACC AACCTGGCCAACCTGACGCAGCCGCTGCTGCGCTACCAGCTCGGCGACCGCGTGCGCCGCGTGGCGGAGCGCTGCAGCTG CGGCAGCGCCTTCCCGCTGATCGAGGTGCAGGGCCGCGCCGACGACACGCTGCGGTTGCGCGACGCGCAGCACCGGCCGG TGACCATCCTGCCGCTGGCGCTGGAGACCGCGATCGAGGAGGGCGCGCACGTCACGCAGTTCCAGGCGCTGTGCGGCAGC GATGGCGATTCGATCGAGCTGCGCTTCGAGGCCTCGGTGGGCGACGCGCGCGCGGCGTTCACGCAATCGCGGCGCGCGCT CGCCGACTTCCTGGCGCACCACGGCGTGAGCGGCACGCGCATCTCGATGAGCGCGGCCGAGCCGCTGCGCCAGCGCGCAA GCGGCAAGCTGCGCCGCGTGGTGATGCTGCCCGCTGCGCCGGTGCGTCGCAAGCCCCCGGCACGCGCGCCCGCTCGGCGC TGA
Upstream 100 bases:
>100_bases GATCGACACCGTAGGCCACGATGTCCCTGCGCGGCTTGATGTCCATCAACCAGAGCCCGCAGTGGCTGCCCATAATCGAC CGCATGCCCGTCGCCCCACC
Downstream 100 bases:
>100_bases GGCCTCCGCCTCTAATCGCGCCGCGCGATCAGCAACCCGACCAGCAGGCCCACGCCGGCGGCCACGCCGATCGCCACGTA CGGGTGCTCATGCACCGCGT
Product: coenzyme F390 synthetase-like protein
Products: NA
Alternate protein names: CapK Protein; CapK Related-Protein; AMP-Dependent Synthetase And Ligase; Capsular Polysaccharide Biosynthesis Protein CapK; Adenylate-Forming; Capsular Polysaccharide Biosynthesis Protein; Phenylacetate-Co A Ligase; Co Synthetase; Phenylacetyl-CoA Ligase PaaK; Aerobic Phenylacetate-CoA Ligase; CapK Domain Protein; CoA Ligase; Two-Component Fusion Protein; Polysaccharide Biosynthesis Protein; Indoleacetate-Lysine Ligase; Co A Ligase; CoA Ligase Involved In Capsular Antigen Synthesis; Phenylacetate-Coa Ligase
Number of amino acids: Translated: 480; Mature: 479
Protein sequence:
>480_residues MTAQHPAPPFDTWLWMQAWSETWCAGLDPAGAGQRLRAQRLARLIDATLSGSPFYRRRHPGAHELADFRPVSKAELMAHF DDWATDRRITRAAAQAFVADPACIADGWLGNYLLWTSSGTSGEPGVFVQDARSLAAYDAIDALRLRGAGPGQVSLGSWGA RQRFAFVGATGGHFAGVVSMERLRRLVPAALAPEIRVLSVLEPLCDVAQALQAQQPSVLITYPSCAAALARLQEAGQLRL ALKEVWTGGEQLSAEQRQQIQAAFGCPVRNNYGASEFFTIAWECAHGELHLNDDWLVLEPVDERLRPLPVGEMSHSTLLT NLANLTQPLLRYQLGDRVRRVAERCSCGSAFPLIEVQGRADDTLRLRDAQHRPVTILPLALETAIEEGAHVTQFQALCGS DGDSIELRFEASVGDARAAFTQSRRALADFLAHHGVSGTRISMSAAEPLRQRASGKLRRVVMLPAAPVRRKPPARAPARR
Sequences:
>Translated_480_residues MTAQHPAPPFDTWLWMQAWSETWCAGLDPAGAGQRLRAQRLARLIDATLSGSPFYRRRHPGAHELADFRPVSKAELMAHF DDWATDRRITRAAAQAFVADPACIADGWLGNYLLWTSSGTSGEPGVFVQDARSLAAYDAIDALRLRGAGPGQVSLGSWGA RQRFAFVGATGGHFAGVVSMERLRRLVPAALAPEIRVLSVLEPLCDVAQALQAQQPSVLITYPSCAAALARLQEAGQLRL ALKEVWTGGEQLSAEQRQQIQAAFGCPVRNNYGASEFFTIAWECAHGELHLNDDWLVLEPVDERLRPLPVGEMSHSTLLT NLANLTQPLLRYQLGDRVRRVAERCSCGSAFPLIEVQGRADDTLRLRDAQHRPVTILPLALETAIEEGAHVTQFQALCGS DGDSIELRFEASVGDARAAFTQSRRALADFLAHHGVSGTRISMSAAEPLRQRASGKLRRVVMLPAAPVRRKPPARAPARR >Mature_479_residues TAQHPAPPFDTWLWMQAWSETWCAGLDPAGAGQRLRAQRLARLIDATLSGSPFYRRRHPGAHELADFRPVSKAELMAHFD DWATDRRITRAAAQAFVADPACIADGWLGNYLLWTSSGTSGEPGVFVQDARSLAAYDAIDALRLRGAGPGQVSLGSWGAR QRFAFVGATGGHFAGVVSMERLRRLVPAALAPEIRVLSVLEPLCDVAQALQAQQPSVLITYPSCAAALARLQEAGQLRLA LKEVWTGGEQLSAEQRQQIQAAFGCPVRNNYGASEFFTIAWECAHGELHLNDDWLVLEPVDERLRPLPVGEMSHSTLLTN LANLTQPLLRYQLGDRVRRVAERCSCGSAFPLIEVQGRADDTLRLRDAQHRPVTILPLALETAIEEGAHVTQFQALCGSD GDSIELRFEASVGDARAAFTQSRRALADFLAHHGVSGTRISMSAAEPLRQRASGKLRRVVMLPAAPVRRKPPARAPARR
Specific function: Unknown
COG id: COG1541
COG function: function code H; Coenzyme F390 synthetase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52431; Mature: 52300
Theoretical pI: Translated: 8.34; Mature: 8.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAQHPAPPFDTWLWMQAWSETWCAGLDPAGAGQRLRAQRLARLIDATLSGSPFYRRRHP CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCC GAHELADFRPVSKAELMAHFDDWATDRRITRAAAQAFVADPACIADGWLGNYLLWTSSGT CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCC SGEPGVFVQDARSLAAYDAIDALRLRGAGPGQVSLGSWGARQRFAFVGATGGHFAGVVSM CCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCEEEEEECCCCHHHHHHHH ERLRRLVPAALAPEIRVLSVLEPLCDVAQALQAQQPSVLITYPSCAAALARLQEAGQLRL HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCHHHH ALKEVWTGGEQLSAEQRQQIQAAFGCPVRNNYGASEFFTIAWECAHGELHLNDDWLVLEP HHHHHHCCCHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCEEEECCCEEEECC VDERLRPLPVGEMSHSTLLTNLANLTQPLLRYQLGDRVRRVAERCSCGSAFPLIEVQGRA HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC DDTLRLRDAQHRPVTILPLALETAIEEGAHVTQFQALCGSDGDSIELRFEASVGDARAAF CCEEEECCCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH TQSRRALADFLAHHGVSGTRISMSAAEPLRQRASGKLRRVVMLPAAPVRRKPPARAPARR HHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC >Mature Secondary Structure TAQHPAPPFDTWLWMQAWSETWCAGLDPAGAGQRLRAQRLARLIDATLSGSPFYRRRHP CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCC GAHELADFRPVSKAELMAHFDDWATDRRITRAAAQAFVADPACIADGWLGNYLLWTSSGT CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCC SGEPGVFVQDARSLAAYDAIDALRLRGAGPGQVSLGSWGARQRFAFVGATGGHFAGVVSM CCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCEEEEEECCCCHHHHHHHH ERLRRLVPAALAPEIRVLSVLEPLCDVAQALQAQQPSVLITYPSCAAALARLQEAGQLRL HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCHHHH ALKEVWTGGEQLSAEQRQQIQAAFGCPVRNNYGASEFFTIAWECAHGELHLNDDWLVLEP HHHHHHCCCHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCEEEECCCEEEECC VDERLRPLPVGEMSHSTLLTNLANLTQPLLRYQLGDRVRRVAERCSCGSAFPLIEVQGRA HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC DDTLRLRDAQHRPVTILPLALETAIEEGAHVTQFQALCGSDGDSIELRFEASVGDARAAF CCEEEECCCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH TQSRRALADFLAHHGVSGTRISMSAAEPLRQRASGKLRRVVMLPAAPVRRKPPARAPARR HHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA