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The map label for this gene is secF [H]

Identifier: 124025660

GI number: 124025660

Start: 878234

End: 879190

Strand: Direct

Name: secF [H]

Synonym: NATL1_09531

Alternate gene names: 124025660

Gene position: 878234-879190 (Clockwise)

Preceding gene: 124025659

Following gene: 124025661

Centisome position: 47.1

GC content: 30.83

Gene sequence:

>957_bases
ATGAAAGCTAAATTTAATGTTCAAATTTATAAAAATAGAAAATATGTGTGGCTTGTTTCATTCTCTTTATGTTTAATTTC
AATAATTGGAATGCTAATTTGCCTTAAAAGTTCTTCTATTAAGGCCCCTTTAAATCTTGGCTTAGACTATACCGGAGGAA
CTCAAATTACCTTAGAGAGGAGTTGTACTGATGAATGTATTAGCTTAAATACAAGTGAAATATCTAATAATATAATCGCT
TTAAAAAAACAGGATAAAAGTTTTAGTTCAAATACATCTCCCAACTTATCTAGATCACAGATTCAATTACTTGATAATTC
ACAATTAATATCCATTAGGCTTCCATTTTTATCTGCAGATCAATCTGACTCTGTAGTGGCCGAGGTTAATAAATCTTTTG
GGCCATTTAACAATGAAAATACGTCTGTAGAAATTATTGGTCCAAGTCTTGGTAGGCAGTTACTTAAAAGCAGTTTAATT
TCTTTATTCTTTGCTTTTCTTGGAATAGCTTTATATATTAATTTTAGATATGACAGAAGATACTCATTTTTAGCATTATT
TGCCCTTTTGCATGACATACTTATTGTTTGCGGTGTATTTGCATGGCTGGGATATTTCTTTAATGTAGAGGTTGATTCCT
TATTTGCTGTATCTCTATTAACCATTGCAGGCTATTCAGTAAATAATACTGTTGTCGTTTTTGATAGGATAAGAGAAAAA
AGTTTATTAGAAAATCAATTAAGTTATAAATATCAGATTGATAAAGCCGTTGGTGCAACATTAACGAGGACGATATATAC
AAGTCTTACAACACTACTTCCATTAATATGTATATTGATTTGGGGAGGATCAACATTGTATTGGTTTGCCTTTGCGCTGT
TAATCGGCGTTATAATTGGATCATGGTCGAGTATAGCTTTAGCACCTTCATTGTTATCAATAACAAGTACAAAATAG

Upstream 100 bases:

>100_bases
TTTTCAAGGTCTTCGAAAAAGCTCTAACTTTATTAATGCTAGTCAGATTCCATCACCCTCTATCAACGTTCAATAACAAC
CAATTTAAATTTATTAAATC

Downstream 100 bases:

>100_bases
CTTGATTGATTAAATATGGGCTTAATTTCAATTGATAGATTATTTTTATATTTAAAATATAATTGGCTACAAATTATTTT
AATTATTCTTTCAATATATG

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MKAKFNVQIYKNRKYVWLVSFSLCLISIIGMLICLKSSSIKAPLNLGLDYTGGTQITLERSCTDECISLNTSEISNNIIA
LKKQDKSFSSNTSPNLSRSQIQLLDNSQLISIRLPFLSADQSDSVVAEVNKSFGPFNNENTSVEIIGPSLGRQLLKSSLI
SLFFAFLGIALYINFRYDRRYSFLALFALLHDILIVCGVFAWLGYFFNVEVDSLFAVSLLTIAGYSVNNTVVVFDRIREK
SLLENQLSYKYQIDKAVGATLTRTIYTSLTTLLPLICILIWGGSTLYWFAFALLIGVIIGSWSSIALAPSLLSITSTK

Sequences:

>Translated_318_residues
MKAKFNVQIYKNRKYVWLVSFSLCLISIIGMLICLKSSSIKAPLNLGLDYTGGTQITLERSCTDECISLNTSEISNNIIA
LKKQDKSFSSNTSPNLSRSQIQLLDNSQLISIRLPFLSADQSDSVVAEVNKSFGPFNNENTSVEIIGPSLGRQLLKSSLI
SLFFAFLGIALYINFRYDRRYSFLALFALLHDILIVCGVFAWLGYFFNVEVDSLFAVSLLTIAGYSVNNTVVVFDRIREK
SLLENQLSYKYQIDKAVGATLTRTIYTSLTTLLPLICILIWGGSTLYWFAFALLIGVIIGSWSSIALAPSLLSITSTK
>Mature_318_residues
MKAKFNVQIYKNRKYVWLVSFSLCLISIIGMLICLKSSSIKAPLNLGLDYTGGTQITLERSCTDECISLNTSEISNNIIA
LKKQDKSFSSNTSPNLSRSQIQLLDNSQLISIRLPFLSADQSDSVVAEVNKSFGPFNNENTSVEIIGPSLGRQLLKSSLI
SLFFAFLGIALYINFRYDRRYSFLALFALLHDILIVCGVFAWLGYFFNVEVDSLFAVSLLTIAGYSVNNTVVVFDRIREK
SLLENQLSYKYQIDKAVGATLTRTIYTSLTTLLPLICILIWGGSTLYWFAFALLIGVIIGSWSSIALAPSLLSITSTK

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=274, Percent_Identity=32.8467153284672, Blast_Score=129, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35339; Mature: 35339

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKFNVQIYKNRKYVWLVSFSLCLISIIGMLICLKSSSIKAPLNLGLDYTGGTQITLER
CCCEEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEEEC
SCTDECISLNTSEISNNIIALKKQDKSFSSNTSPNLSRSQIQLLDNSQLISIRLPFLSAD
CCCHHHHCCCHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHEEECCCEEEEEEECEECCC
QSDSVVAEVNKSFGPFNNENTSVEIIGPSLGRQLLKSSLISLFFAFLGIALYINFRYDRR
CCCCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCC
YSFLALFALLHDILIVCGVFAWLGYFFNVEVDSLFAVSLLTIAGYSVNNTVVVFDRIREK
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHCCCCCCCEEEEEEHHHHH
SLLENQLSYKYQIDKAVGATLTRTIYTSLTTLLPLICILIWGGSTLYWFAFALLIGVIIG
HHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
SWSSIALAPSLLSITSTK
CCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKAKFNVQIYKNRKYVWLVSFSLCLISIIGMLICLKSSSIKAPLNLGLDYTGGTQITLER
CCCEEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEEEC
SCTDECISLNTSEISNNIIALKKQDKSFSSNTSPNLSRSQIQLLDNSQLISIRLPFLSAD
CCCHHHHCCCHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHEEECCCEEEEEEECEECCC
QSDSVVAEVNKSFGPFNNENTSVEIIGPSLGRQLLKSSLISLFFAFLGIALYINFRYDRR
CCCCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCC
YSFLALFALLHDILIVCGVFAWLGYFFNVEVDSLFAVSLLTIAGYSVNNTVVVFDRIREK
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHCCCCCCCEEEEEEHHHHH
SLLENQLSYKYQIDKAVGATLTRTIYTSLTTLLPLICILIWGGSTLYWFAFALLIGVIIG
HHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
SWSSIALAPSLLSITSTK
CCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]