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The map label for this gene is secD [H]

Identifier: 124025659

GI number: 124025659

Start: 876719

End: 878209

Strand: Direct

Name: secD [H]

Synonym: NATL1_09521

Alternate gene names: 124025659

Gene position: 876719-878209 (Clockwise)

Preceding gene: 124025658

Following gene: 124025660

Centisome position: 47.02

GC content: 34.27

Gene sequence:

>1491_bases
ATGGGTAGAAAGAATTACTGGTTTCTTTTCGTTATCCTTTTTGCAATATTTAGTATTTTTATATGTACTAATATTCCTTT
TCAATTAGGATTGGATTTAAGAGGAGGTAGTCAACTAACTCTAGAGGTTCAGCCTACTAAGGAAATTACAAAAATTACTC
CCAACGAAATAGAAGGAGTTAAGGCTGTTCTTGACAAGAGAGTAAACGGATTAGGAGTTTCAGATTCTCAACTTCAAACT
GTAGGAACAAATCAATTATTATTAGAACTGCCTGGGGAACAAGATCCTTCTGGGGCAGCGAAAGTATTAGGAGAAACTGC
TCTATTAGAATTCAGAATTCAGAAAAATGGTACAGCGGCTCAATATAGAGATCTACAAACTCAACGAAATAGTGTTGAAT
CTATAATTAACTTACTAGAAGAGAATAATAATTCAGCTCAGTTACTAAAGGAGATCAATATTAACAATGATATTAATCAG
TTATTCGAAAAATATAATATTCAATCTGACCAGATATTAGATGTAGTTGAATTTAATATTTTAAGGAATAAAATAAGTAC
TGAAATAGCAGGTCTTTTTGAACCAACATCATTAACTGGACAGTATTTGACAAACGCAGGAAGACGACAAGATCAAAATA
CTAATAATTGGGAAGTTACTTTAAGCTTCAATAATGAGGGAGGAGAATTATTTGCAGATCTCACAAAATCCATCGCTGGC
ACGTCTCGATTGCTTGGAATTGTTATTGATGGGATCTCATATAGCGAAGCAAGTGTTGGTAAGCAATTTGAAACTGCAGG
TATTACTGGGGGAGCCGCGACAATAAGCGGTAACTTTACTGCGGATGATGCAAGAAATTTAGAAGTTCAATTAAGGGGAG
GTGCTTTACCACTCCCTATTGAGATTATTCAAATAAGAACAATAGGTCCATCTCTAGGTACACAAAATATTCGTTTAAGT
CTTTTTGCTGCTCTAACAGGCTTATTTTTTGTAGGTATTTTTATGATCTTTATCTATAAACTTGCTGGATTTGTTGCTGT
CTTGGCATTATCTTGTTATTCGCTATTCACTCTCTCTATTTATGCACTACTCCCAGTAACTCTTACTCTCCCAGGTATAG
CTGGATTTATATTAAGCATAGGAATGGCGGTTGACGCTAATGTTCTTATTTTTGAAAGATTAAAGGAAGAACTCCTTAAT
GGAAATACATTGATTCGGTCAATAGACGCAAGTTTTAAAAACGCTTTTTCATCAATAATTGATGGTCATTTAACTACTTT
AATAAGCTGTATAACGTTATTCTATTTGGGAACTGGATTTGTAAAAGGGTTCGCAGCCACCTTAGGTATAGGGGTTATGT
TGAGCTTATTTACTGCGTTAACATGTACAAAAGCAATTTTGAAGTTCCTAATGAGTTTTCAAGGTCTTCGAAAAAGCTCT
AACTTTATTAATGCTAGTCAGATTCCATCACCCTCTATCAACGTTCAATAA

Upstream 100 bases:

>100_bases
CTCCTTATAATGGAAACCTAGAAAATTTAACCATTATTCAACCTCATCAGATAGTAGATGCTGCTGAAAAAATTATTAAA
AATGGTGGATTAGATTAATA

Downstream 100 bases:

>100_bases
CAACCAATTTAAATTTATTAAATCATGAAAGCTAAATTTAATGTTCAAATTTATAAAAATAGAAAATATGTGTGGCTTGT
TTCATTCTCTTTATGTTTAA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 495

Protein sequence:

>496_residues
MGRKNYWFLFVILFAIFSIFICTNIPFQLGLDLRGGSQLTLEVQPTKEITKITPNEIEGVKAVLDKRVNGLGVSDSQLQT
VGTNQLLLELPGEQDPSGAAKVLGETALLEFRIQKNGTAAQYRDLQTQRNSVESIINLLEENNNSAQLLKEININNDINQ
LFEKYNIQSDQILDVVEFNILRNKISTEIAGLFEPTSLTGQYLTNAGRRQDQNTNNWEVTLSFNNEGGELFADLTKSIAG
TSRLLGIVIDGISYSEASVGKQFETAGITGGAATISGNFTADDARNLEVQLRGGALPLPIEIIQIRTIGPSLGTQNIRLS
LFAALTGLFFVGIFMIFIYKLAGFVAVLALSCYSLFTLSIYALLPVTLTLPGIAGFILSIGMAVDANVLIFERLKEELLN
GNTLIRSIDASFKNAFSSIIDGHLTTLISCITLFYLGTGFVKGFAATLGIGVMLSLFTALTCTKAILKFLMSFQGLRKSS
NFINASQIPSPSINVQ

Sequences:

>Translated_496_residues
MGRKNYWFLFVILFAIFSIFICTNIPFQLGLDLRGGSQLTLEVQPTKEITKITPNEIEGVKAVLDKRVNGLGVSDSQLQT
VGTNQLLLELPGEQDPSGAAKVLGETALLEFRIQKNGTAAQYRDLQTQRNSVESIINLLEENNNSAQLLKEININNDINQ
LFEKYNIQSDQILDVVEFNILRNKISTEIAGLFEPTSLTGQYLTNAGRRQDQNTNNWEVTLSFNNEGGELFADLTKSIAG
TSRLLGIVIDGISYSEASVGKQFETAGITGGAATISGNFTADDARNLEVQLRGGALPLPIEIIQIRTIGPSLGTQNIRLS
LFAALTGLFFVGIFMIFIYKLAGFVAVLALSCYSLFTLSIYALLPVTLTLPGIAGFILSIGMAVDANVLIFERLKEELLN
GNTLIRSIDASFKNAFSSIIDGHLTTLISCITLFYLGTGFVKGFAATLGIGVMLSLFTALTCTKAILKFLMSFQGLRKSS
NFINASQIPSPSINVQ
>Mature_495_residues
GRKNYWFLFVILFAIFSIFICTNIPFQLGLDLRGGSQLTLEVQPTKEITKITPNEIEGVKAVLDKRVNGLGVSDSQLQTV
GTNQLLLELPGEQDPSGAAKVLGETALLEFRIQKNGTAAQYRDLQTQRNSVESIINLLEENNNSAQLLKEININNDINQL
FEKYNIQSDQILDVVEFNILRNKISTEIAGLFEPTSLTGQYLTNAGRRQDQNTNNWEVTLSFNNEGGELFADLTKSIAGT
SRLLGIVIDGISYSEASVGKQFETAGITGGAATISGNFTADDARNLEVQLRGGALPLPIEIIQIRTIGPSLGTQNIRLSL
FAALTGLFFVGIFMIFIYKLAGFVAVLALSCYSLFTLSIYALLPVTLTLPGIAGFILSIGMAVDANVLIFERLKEELLNG
NTLIRSIDASFKNAFSSIIDGHLTTLISCITLFYLGTGFVKGFAATLGIGVMLSLFTALTCTKAILKFLMSFQGLRKSSN
FINASQIPSPSINVQ

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=498, Percent_Identity=33.5341365461847, Blast_Score=204, Evalue=1e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 53958; Mature: 53827

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRKNYWFLFVILFAIFSIFICTNIPFQLGLDLRGGSQLTLEVQPTKEITKITPNEIEGV
CCCCHHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCEEEEEECCCHHHHCCCCHHHHHH
KAVLDKRVNGLGVSDSQLQTVGTNQLLLELPGEQDPSGAAKVLGETALLEFRIQKNGTAA
HHHHHHHHCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCHHEEEEEECCCCCHH
QYRDLQTQRNSVESIINLLEENNNSAQLLKEININNDINQLFEKYNIQSDQILDVVEFNI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
LRNKISTEIAGLFEPTSLTGQYLTNAGRRQDQNTNNWEVTLSFNNEGGELFADLTKSIAG
HHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
TSRLLGIVIDGISYSEASVGKQFETAGITGGAATISGNFTADDARNLEVQLRGGALPLPI
HHHHHHHHEECCCCCHHHCCCCHHHCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCE
EIIQIRTIGPSLGTQNIRLSLFAALTGLFFVGIFMIFIYKLAGFVAVLALSCYSLFTLSI
EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YALLPVTLTLPGIAGFILSIGMAVDANVLIFERLKEELLNGNTLIRSIDASFKNAFSSII
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
DGHLTTLISCITLFYLGTGFVKGFAATLGIGVMLSLFTALTCTKAILKFLMSFQGLRKSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NFINASQIPSPSINVQ
CCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GRKNYWFLFVILFAIFSIFICTNIPFQLGLDLRGGSQLTLEVQPTKEITKITPNEIEGV
CCCHHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCEEEEEECCCHHHHCCCCHHHHHH
KAVLDKRVNGLGVSDSQLQTVGTNQLLLELPGEQDPSGAAKVLGETALLEFRIQKNGTAA
HHHHHHHHCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCHHEEEEEECCCCCHH
QYRDLQTQRNSVESIINLLEENNNSAQLLKEININNDINQLFEKYNIQSDQILDVVEFNI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
LRNKISTEIAGLFEPTSLTGQYLTNAGRRQDQNTNNWEVTLSFNNEGGELFADLTKSIAG
HHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
TSRLLGIVIDGISYSEASVGKQFETAGITGGAATISGNFTADDARNLEVQLRGGALPLPI
HHHHHHHHEECCCCCHHHCCCCHHHCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCE
EIIQIRTIGPSLGTQNIRLSLFAALTGLFFVGIFMIFIYKLAGFVAVLALSCYSLFTLSI
EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YALLPVTLTLPGIAGFILSIGMAVDANVLIFERLKEELLNGNTLIRSIDASFKNAFSSII
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
DGHLTTLISCITLFYLGTGFVKGFAATLGIGVMLSLFTALTCTKAILKFLMSFQGLRKSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NFINASQIPSPSINVQ
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]