| Definition | Prochlorococcus marinus str. NATL1A, complete genome. |
|---|---|
| Accession | NC_008819 |
| Length | 1,864,731 |
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The map label for this gene is nrdJ [H]
Identifier: 124025425
GI number: 124025425
Start: 660725
End: 663061
Strand: Reverse
Name: nrdJ [H]
Synonym: NATL1_07181
Alternate gene names: 124025425
Gene position: 663061-660725 (Counterclockwise)
Preceding gene: 124025429
Following gene: 124025424
Centisome position: 35.56
GC content: 39.92
Gene sequence:
>2337_bases TTGACAATCGCAACTAGTCAGCCCGAAACCAATAATTCAGCATCGGGTAAAAAAGATGATACGACTGATTTTCCAATAAC TGCACCTGCAGCTAATCCTGTCTTTTACAGAACTTATAGTAGGAAACTTCCAGCTGGTCGTGAAAGCTGGGAACAAGTAA ATGCAAGAAACCTAGATGGTCTAAAAAAGCTTGGGGGACTAAACGAAGCAGAAATAAATCTAATGCAAAGAATGCAACAA GAGAAAAAAGCTCTTCCCTCAGGTCGATGGCTTTGGATAGGGGGAACAGAATGGATTGAAAAAGAGAAGAATTTTTCTGG AGCCTACAATTGCACCTCAACGAATCTTGTTGATTGGCAAGCCTTTGGACTTATGATGGATTTAGCCATGATGGGTTGCG GAACAGGGGCGATAATTGAACCACACTTAATTGATCAACTGCCAGAAGTTAGAAATACAATTCACATTGCAAATGTTACA GAAATTGGATTAACCCCCTCTGAAGAAAGAAATGAAAAAACTACATTTTCTATTAAAGATAATAATGTACTAATAAAAGT TGGAGATAGTAGACGTGGATGGGTTGATAGCTATCAAAAAATCCTTGAATTAAGCAGTGACAATAGCTTCAATTCTAAAG TTGTTAATGTATCTGTTGATTTAAAAGATGTAAGGCCAGCGGGTGAATCACTCAAAGGTTTCGGAGGCATGGCGAACCCT GTAAAACTCAAAGATTTATACCCGCGCGTAGCAACTCTTCTAAACAAAGCAGTAGGAAGAAAACTAACTTCAATTGAATG TTGTTTGCTTATCGACGAAGCAGCCGTAACAATCGTTGCTGGCAACATCAGAAGGAGTGCAGGTATGCGCCAATTTTCTT CGCAAGATTTAGAAGCAGCTGGTGCTAAAGAAAATTTATGGAAGCAAGACTCAGAGGGGAATTGGAGTATAGACCCAGAG AAGGATGCATTAAGAATGGCTAACCATACTCGTGTTTACCACACCAAACCTGAATTAAAAGTCCTTGTCGATGCGGTTAT TAAACAATTTCATTCAGGTGAGGGAGCTATTCAATTTGCACCAGAGGCAATTGCTCGCTCAAATGCTGACATACTTTCAA CAGTAGAACTCAGGAATGAATTTATAGACATCTATTGTGACCAAGGTAAAGAAGAAGCTTCCAAATGGATTCAATCAAAT TATGGTCCATTTGATGATAAAGAGCTTTTTCACAGACTCAGTAGATATGGTCTAAATCCTTGCGGAGAAATTCTAGGTTC AGATTTTCACTGTAATCTTGCAGAAATCCATCTTAATCAAATTGATCCATTAGACATAAATCAACAAGAAGATGCTTTCA AAGCAGCCGCTTTGTCAGTAGCCTGTCTCCTTAATCATCGATTCGAAGTAGAGCGGTACAGAAAAAGTCGCGAATGGGAT CCTATTGTTGGGGTTAGCTTCACAGGACTTTTTGACTTTTTCGTTCATGCCTTTGGGACTCCATGGCTAAAATGGTGGGA GGCGGGACGACCTGAGACAAAAGAAGGAAAGGATTTCAAACTCAAAGAAGCTACTTTTTTGAGTCGATGGAGGAAGATCG TCAACGATACGGTTTGGGAGTATTGTGATAGACATAATATTCGCCGTCCAAGTCGTTGTACAACAGTTCAACCTGCGGGT ACAAAAAGTCTTCTAACAGGGGCTTCGCCAGGTTGGCATCCTCCAAAAGCTCAGCGTTTTATCAGAAGAATTACGTTTAG GAAGAACGATCCAGTCGCATTAGCTTGCATGGATTATGGATACACAATCGTCCCTTCTCAGTCAGATAAAGATGAAAATG GAAAACTACTAGATAATCCATTTGATCCAAAATGTACTGAGTGGCTAGTTGAAATACCTACTGAGGTAAGTTGGGCAAAC ATTCCTGGCGCGGATGAAATAGATATCAATAACTTCTCAGCTCTTGCACAATTTGATTTTTATATGCAAGTTCAAACAAA CTACACAGACCACAACACCTCTGCCACTATTGAATTCAGAGAAAATGAGATAGAGGGTTTAGCTAAAGCTCTTTATAGCT CAATCAGTGAAAATAAAGGTTATATTTCAGCGGCATTGCTAGCAAGGTTTGATGCAAATGCAACCTTCCCCAGACTTCCT TTTGAACCTATTGATGAAGAATGCTACACAAAAATGCAATCAGAGGTCATAAAAAGAAGAGACTCTTGTGATTTCTTTGA AGCCCTTAGTCGATATGATCAAGGGGAGCTTACTGAAGCAGGTCCAGCAGGTTGCGATTCTGATAAATGCTTACTCCCAC TGGCCAAACCGTCTTAA
Upstream 100 bases:
>100_bases AAAAATTTTTTAATTTGAAGCCCCTGTAGATGGTGTTAAAAAAACTTGCCAACGCTATAGATGGCGTTACCGTGGTACTT ACCCAAGGGATACAAAGATT
Downstream 100 bases:
>100_bases TAGCAGTCATTCAATCTTGAGTGGAGGCCTTTTATTATCATCCGAAGGACGTTGCTTAACAAATAATATAAGTTTAGTTT TTCAAAGAAGTTTTAAAGAT
Product: ribonucleotide reductase (class II)
Products: NA
Alternate protein names: RTPR [H]
Number of amino acids: Translated: 778; Mature: 777
Protein sequence:
>778_residues MTIATSQPETNNSASGKKDDTTDFPITAPAANPVFYRTYSRKLPAGRESWEQVNARNLDGLKKLGGLNEAEINLMQRMQQ EKKALPSGRWLWIGGTEWIEKEKNFSGAYNCTSTNLVDWQAFGLMMDLAMMGCGTGAIIEPHLIDQLPEVRNTIHIANVT EIGLTPSEERNEKTTFSIKDNNVLIKVGDSRRGWVDSYQKILELSSDNSFNSKVVNVSVDLKDVRPAGESLKGFGGMANP VKLKDLYPRVATLLNKAVGRKLTSIECCLLIDEAAVTIVAGNIRRSAGMRQFSSQDLEAAGAKENLWKQDSEGNWSIDPE KDALRMANHTRVYHTKPELKVLVDAVIKQFHSGEGAIQFAPEAIARSNADILSTVELRNEFIDIYCDQGKEEASKWIQSN YGPFDDKELFHRLSRYGLNPCGEILGSDFHCNLAEIHLNQIDPLDINQQEDAFKAAALSVACLLNHRFEVERYRKSREWD PIVGVSFTGLFDFFVHAFGTPWLKWWEAGRPETKEGKDFKLKEATFLSRWRKIVNDTVWEYCDRHNIRRPSRCTTVQPAG TKSLLTGASPGWHPPKAQRFIRRITFRKNDPVALACMDYGYTIVPSQSDKDENGKLLDNPFDPKCTEWLVEIPTEVSWAN IPGADEIDINNFSALAQFDFYMQVQTNYTDHNTSATIEFRENEIEGLAKALYSSISENKGYISAALLARFDANATFPRLP FEPIDEECYTKMQSEVIKRRDSCDFFEALSRYDQGELTEAGPAGCDSDKCLLPLAKPS
Sequences:
>Translated_778_residues MTIATSQPETNNSASGKKDDTTDFPITAPAANPVFYRTYSRKLPAGRESWEQVNARNLDGLKKLGGLNEAEINLMQRMQQ EKKALPSGRWLWIGGTEWIEKEKNFSGAYNCTSTNLVDWQAFGLMMDLAMMGCGTGAIIEPHLIDQLPEVRNTIHIANVT EIGLTPSEERNEKTTFSIKDNNVLIKVGDSRRGWVDSYQKILELSSDNSFNSKVVNVSVDLKDVRPAGESLKGFGGMANP VKLKDLYPRVATLLNKAVGRKLTSIECCLLIDEAAVTIVAGNIRRSAGMRQFSSQDLEAAGAKENLWKQDSEGNWSIDPE KDALRMANHTRVYHTKPELKVLVDAVIKQFHSGEGAIQFAPEAIARSNADILSTVELRNEFIDIYCDQGKEEASKWIQSN YGPFDDKELFHRLSRYGLNPCGEILGSDFHCNLAEIHLNQIDPLDINQQEDAFKAAALSVACLLNHRFEVERYRKSREWD PIVGVSFTGLFDFFVHAFGTPWLKWWEAGRPETKEGKDFKLKEATFLSRWRKIVNDTVWEYCDRHNIRRPSRCTTVQPAG TKSLLTGASPGWHPPKAQRFIRRITFRKNDPVALACMDYGYTIVPSQSDKDENGKLLDNPFDPKCTEWLVEIPTEVSWAN IPGADEIDINNFSALAQFDFYMQVQTNYTDHNTSATIEFRENEIEGLAKALYSSISENKGYISAALLARFDANATFPRLP FEPIDEECYTKMQSEVIKRRDSCDFFEALSRYDQGELTEAGPAGCDSDKCLLPLAKPS >Mature_777_residues TIATSQPETNNSASGKKDDTTDFPITAPAANPVFYRTYSRKLPAGRESWEQVNARNLDGLKKLGGLNEAEINLMQRMQQE KKALPSGRWLWIGGTEWIEKEKNFSGAYNCTSTNLVDWQAFGLMMDLAMMGCGTGAIIEPHLIDQLPEVRNTIHIANVTE IGLTPSEERNEKTTFSIKDNNVLIKVGDSRRGWVDSYQKILELSSDNSFNSKVVNVSVDLKDVRPAGESLKGFGGMANPV KLKDLYPRVATLLNKAVGRKLTSIECCLLIDEAAVTIVAGNIRRSAGMRQFSSQDLEAAGAKENLWKQDSEGNWSIDPEK DALRMANHTRVYHTKPELKVLVDAVIKQFHSGEGAIQFAPEAIARSNADILSTVELRNEFIDIYCDQGKEEASKWIQSNY GPFDDKELFHRLSRYGLNPCGEILGSDFHCNLAEIHLNQIDPLDINQQEDAFKAAALSVACLLNHRFEVERYRKSREWDP IVGVSFTGLFDFFVHAFGTPWLKWWEAGRPETKEGKDFKLKEATFLSRWRKIVNDTVWEYCDRHNIRRPSRCTTVQPAGT KSLLTGASPGWHPPKAQRFIRRITFRKNDPVALACMDYGYTIVPSQSDKDENGKLLDNPFDPKCTEWLVEIPTEVSWANI PGADEIDINNFSALAQFDFYMQVQTNYTDHNTSATIEFRENEIEGLAKALYSSISENKGYISAALLARFDANATFPRLPF EPIDEECYTKMQSEVIKRRDSCDFFEALSRYDQGELTEAGPAGCDSDKCLLPLAKPS
Specific function: Unknown
COG id: COG1372
COG function: function code L; Intein/homing endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class II ribonucleoside-triphosphate reductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000788 - InterPro: IPR013345 [H]
Pfam domain/function: PF02867 Ribonuc_red_lgC [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 87578; Mature: 87447
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIATSQPETNNSASGKKDDTTDFPITAPAANPVFYRTYSRKLPAGRESWEQVNARNLDG CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEHHCCCCCCHHHHHHHCCCCCHH LKKLGGLNEAEINLMQRMQQEKKALPSGRWLWIGGTEWIEKEKNFSGAYNCTSTNLVDWQ HHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCCCCCCCCCCCHHH AFGLMMDLAMMGCGTGAIIEPHLIDQLPEVRNTIHIANVTEIGLTPSEERNEKTTFSIKD HHHHHHHHHHHCCCCCCEECCHHHHHHHHHHCEEEEEEEEEECCCCCCCCCCCEEEEEEC NNVLIKVGDSRRGWVDSYQKILELSSDNSFNSKVVNVSVDLKDVRPAGESLKGFGGMANP CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHCCCCCHHHHHCCCCCCC VKLKDLYPRVATLLNKAVGRKLTSIECCLLIDEAAVTIVAGNIRRSAGMRQFSSQDLEAA EEHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEECCHHHHHHHHHHCCCCHHHC GAKENLWKQDSEGNWSIDPEKDALRMANHTRVYHTKPELKVLVDAVIKQFHSGEGAIQFA CCHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEC PEAIARSNADILSTVELRNEFIDIYCDQGKEEASKWIQSNYGPFDDKELFHRLSRYGLNP HHHHHCCCCHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH CGEILGSDFHCNLAEIHLNQIDPLDINQQEDAFKAAALSVACLLNHRFEVERYRKSREWD HHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC PIVGVSFTGLFDFFVHAFGTPWLKWWEAGRPETKEGKDFKLKEATFLSRWRKIVNDTVWE CEECCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH YCDRHNIRRPSRCTTVQPAGTKSLLTGASPGWHPPKAQRFIRRITFRKNDPVALACMDYG HHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCC YTIVPSQSDKDENGKLLDNPFDPKCTEWLVEIPTEVSWANIPGADEIDINNFSALAQFDF EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHEEEEE YMQVQTNYTDHNTSATIEFRENEIEGLAKALYSSISENKGYISAALLARFDANATFPRLP EEEEEECCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC FEPIDEECYTKMQSEVIKRRDSCDFFEALSRYDQGELTEAGPAGCDSDKCLLPLAKPS CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCC >Mature Secondary Structure TIATSQPETNNSASGKKDDTTDFPITAPAANPVFYRTYSRKLPAGRESWEQVNARNLDG CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEHHCCCCCCHHHHHHHCCCCCHH LKKLGGLNEAEINLMQRMQQEKKALPSGRWLWIGGTEWIEKEKNFSGAYNCTSTNLVDWQ HHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCCCCCCCCCCCHHH AFGLMMDLAMMGCGTGAIIEPHLIDQLPEVRNTIHIANVTEIGLTPSEERNEKTTFSIKD HHHHHHHHHHHCCCCCCEECCHHHHHHHHHHCEEEEEEEEEECCCCCCCCCCCEEEEEEC NNVLIKVGDSRRGWVDSYQKILELSSDNSFNSKVVNVSVDLKDVRPAGESLKGFGGMANP CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHCCCCCHHHHHCCCCCCC VKLKDLYPRVATLLNKAVGRKLTSIECCLLIDEAAVTIVAGNIRRSAGMRQFSSQDLEAA EEHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEECCHHHHHHHHHHCCCCHHHC GAKENLWKQDSEGNWSIDPEKDALRMANHTRVYHTKPELKVLVDAVIKQFHSGEGAIQFA CCHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEC PEAIARSNADILSTVELRNEFIDIYCDQGKEEASKWIQSNYGPFDDKELFHRLSRYGLNP HHHHHCCCCHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH CGEILGSDFHCNLAEIHLNQIDPLDINQQEDAFKAAALSVACLLNHRFEVERYRKSREWD HHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC PIVGVSFTGLFDFFVHAFGTPWLKWWEAGRPETKEGKDFKLKEATFLSRWRKIVNDTVWE CEECCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH YCDRHNIRRPSRCTTVQPAGTKSLLTGASPGWHPPKAQRFIRRITFRKNDPVALACMDYG HHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCC YTIVPSQSDKDENGKLLDNPFDPKCTEWLVEIPTEVSWANIPGADEIDINNFSALAQFDF EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHEEEEE YMQVQTNYTDHNTSATIEFRENEIEGLAKALYSSISENKGYISAALLARFDANATFPRLP EEEEEECCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC FEPIDEECYTKMQSEVIKRRDSCDFFEALSRYDQGELTEAGPAGCDSDKCLLPLAKPS CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA