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The map label for this gene is mscS [C]

Identifier: 124025407

GI number: 124025407

Start: 641148

End: 642164

Strand: Reverse

Name: mscS [C]

Synonym: NATL1_06981

Alternate gene names: 124025407

Gene position: 642164-641148 (Counterclockwise)

Preceding gene: 124025408

Following gene: 124025405

Centisome position: 34.44

GC content: 32.84

Gene sequence:

>1017_bases
ATGGACGATTTTTATAAAAACATAATCATTTCATTACTTACTTTTAGCGTTGGTTTCATTATTTCCTTGGTGAGTCCAAA
AATCCTAAAAAAGGTTTTAAGGAGAATAACCTCTACTACTAAAAGCAAGACTGATGACTATATAGCTATTCTTTTAATTG
AGACTATTAAACCTTTAGGGTTTATCTTAAGTTTCATAGTTGCATGGAAAGTCTTACTAATTGGTGGAATAGTTGATAAG
ACATTAATTGGTATTAGTAAGTTTCTATGCCTTATTTATATTGTCAGATTTATAAATAGAGTATTTTTAAAAATAATACA
AAGATGGGCAAGCAAAATCAACGATCAATCTATCAGTGAAATGATTCGTTCACTTAGTCCAATGGTTGGGGCATCTGTTT
GGAGTCTAGGAGTTATTTTTTATCTTCAAAATATGGGAGTCCAAATGGCAGCCATTTGGGCTCTTTTAAGTGCAGGAGGT
ATAGGAGCTGGACTTGCATTAAAGGAACCAGTTCAAGAGTTCTTCGAATACATAACGATCCTCCTAGATAAACCATTTCA
AAGTGGACAGTTCATTCATATTGATGGGATCTGGGCAAAAGTTGAGAGAGTAGGTGTTAGATCAACACGCTTAAGAAGTA
TTAACGGAGAAGCAATAGTAATGAGCAATAGCCGACTCACAAATGGAGTAATCTCAAATTATGCTGAGATGAAAAAAAGA
AGACTGGTTCATAAATTAGGTGTGGTCTATGAAACTACATATGAACAAACAAAAAGCATACCTGTGATGATAAAAAATAT
TGTTGATAAAACTGAAAATGCGATCTTCGACCGATGTCATTTTATCGAATTCGCAAATAGCAGTCTTGATTTTGAACTAG
TCTATTACATCCCTACAAGTGATTATCTTCTAGCAATGTCAGCTCAGCAAGAAATTAATCTAGAGATCATGAAGAAATTC
CAAAATGAAAATATTAACTTCGCATATCCAACCCAAACAATTCATATAAATAAATAA

Upstream 100 bases:

>100_bases
TAAGTAAAATTTTAAAAAACTCATTTTCAAATTAAATAATTAGAAAATATCTAGACAAATCAATTTTTTCAGGCAATCTG
AAGAAAAGTAATCTGACATC

Downstream 100 bases:

>100_bases
GTGATATTTATTTATTTATCTTATCTATTAGAGATTTAGATAACTCCCATAAATTATCTGATAAATCTCCTCTTTGGGCA
TCATTACTTGTTTCGGTTTC

Product: small mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MDDFYKNIIISLLTFSVGFIISLVSPKILKKVLRRITSTTKSKTDDYIAILLIETIKPLGFILSFIVAWKVLLIGGIVDK
TLIGISKFLCLIYIVRFINRVFLKIIQRWASKINDQSISEMIRSLSPMVGASVWSLGVIFYLQNMGVQMAAIWALLSAGG
IGAGLALKEPVQEFFEYITILLDKPFQSGQFIHIDGIWAKVERVGVRSTRLRSINGEAIVMSNSRLTNGVISNYAEMKKR
RLVHKLGVVYETTYEQTKSIPVMIKNIVDKTENAIFDRCHFIEFANSSLDFELVYYIPTSDYLLAMSAQQEINLEIMKKF
QNENINFAYPTQTIHINK

Sequences:

>Translated_338_residues
MDDFYKNIIISLLTFSVGFIISLVSPKILKKVLRRITSTTKSKTDDYIAILLIETIKPLGFILSFIVAWKVLLIGGIVDK
TLIGISKFLCLIYIVRFINRVFLKIIQRWASKINDQSISEMIRSLSPMVGASVWSLGVIFYLQNMGVQMAAIWALLSAGG
IGAGLALKEPVQEFFEYITILLDKPFQSGQFIHIDGIWAKVERVGVRSTRLRSINGEAIVMSNSRLTNGVISNYAEMKKR
RLVHKLGVVYETTYEQTKSIPVMIKNIVDKTENAIFDRCHFIEFANSSLDFELVYYIPTSDYLLAMSAQQEINLEIMKKF
QNENINFAYPTQTIHINK
>Mature_338_residues
MDDFYKNIIISLLTFSVGFIISLVSPKILKKVLRRITSTTKSKTDDYIAILLIETIKPLGFILSFIVAWKVLLIGGIVDK
TLIGISKFLCLIYIVRFINRVFLKIIQRWASKINDQSISEMIRSLSPMVGASVWSLGVIFYLQNMGVQMAAIWALLSAGG
IGAGLALKEPVQEFFEYITILLDKPFQSGQFIHIDGIWAKVERVGVRSTRLRSINGEAIVMSNSRLTNGVISNYAEMKKR
RLVHKLGVVYETTYEQTKSIPVMIKNIVDKTENAIFDRCHFIEFANSSLDFELVYYIPTSDYLLAMSAQQEINLEIMKKF
QNENINFAYPTQTIHINK

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1787591, Length=264, Percent_Identity=24.6212121212121, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1789291, Length=291, Percent_Identity=24.7422680412371, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 38429; Mature: 38429

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDFYKNIIISLLTFSVGFIISLVSPKILKKVLRRITSTTKSKTDDYIAILLIETIKPLG
CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHH
FILSFIVAWKVLLIGGIVDKTLIGISKFLCLIYIVRFINRVFLKIIQRWASKINDQSISE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
MIRSLSPMVGASVWSLGVIFYLQNMGVQMAAIWALLSAGGIGAGLALKEPVQEFFEYITI
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LLDKPFQSGQFIHIDGIWAKVERVGVRSTRLRSINGEAIVMSNSRLTNGVISNYAEMKKR
HHCCCCCCCCEEEECHHHHHHHHHCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHH
RLVHKLGVVYETTYEQTKSIPVMIKNIVDKTENAIFDRCHFIEFANSSLDFELVYYIPTS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
DYLLAMSAQQEINLEIMKKFQNENINFAYPTQTIHINK
CEEEEECCCHHCCHHHHHHHHCCCCCEECCCCEEEECC
>Mature Secondary Structure
MDDFYKNIIISLLTFSVGFIISLVSPKILKKVLRRITSTTKSKTDDYIAILLIETIKPLG
CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHH
FILSFIVAWKVLLIGGIVDKTLIGISKFLCLIYIVRFINRVFLKIIQRWASKINDQSISE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
MIRSLSPMVGASVWSLGVIFYLQNMGVQMAAIWALLSAGGIGAGLALKEPVQEFFEYITI
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LLDKPFQSGQFIHIDGIWAKVERVGVRSTRLRSINGEAIVMSNSRLTNGVISNYAEMKKR
HHCCCCCCCCEEEECHHHHHHHHHCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHH
RLVHKLGVVYETTYEQTKSIPVMIKNIVDKTENAIFDRCHFIEFANSSLDFELVYYIPTS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
DYLLAMSAQQEINLEIMKKFQNENINFAYPTQTIHINK
CEEEEECCCHHCCHHHHHHHHCCCCCEECCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]