Definition | Prochlorococcus marinus str. NATL1A, complete genome. |
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Accession | NC_008819 |
Length | 1,864,731 |
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The map label for this gene is menB [H]
Identifier: 124025375
GI number: 124025375
Start: 610013
End: 610906
Strand: Direct
Name: menB [H]
Synonym: NATL1_06641
Alternate gene names: 124025375
Gene position: 610013-610906 (Clockwise)
Preceding gene: 124025374
Following gene: 124025376
Centisome position: 32.71
GC content: 39.82
Gene sequence:
>894_bases ATGACTTTAAAACCTATTACTCCTAACAATATGTCTAGAAGAGTTCTCCCTGGGGAAATTATTACCTCATGGGTTTCTGT TGGTGAATACAAAGATATCTTGCTTGATAAAAGTCCAGAAGGAATTGCTCGTGTTGCGATAAATCGTCCTGAGAAAAGAA ATGCTTTTCGACCTCAAACAATTTCAGAACTTTGTGATGCATTTATTAGAATAAGAGAAGATCCAAAAATTGGAGTCGTT TTATTTACAGGCGTAGGGCCTTCCAAAGATGGAAAGTTCGCTTTTTGTTCTGGCGGAGATCAGGCTATACGCGGAAGTGG AGGATACCTTGGAGATGATGGAATTCCGCGTTTAAATGTTCTTGATTTACAACGTATAATTCGGAGCCTTCCTAAAGTAG TTATTGCACTTGTCCCTGGTTTCGCTATAGGGGGAGGACATGTTTTACATTTAATTTGTGATCTGAGCTTGGCTGCAGAT AATGCAATGTTCGGACAAACAGGACCTAAAGTTGGGAGCTTTGATGCAGGGTTTGGTTCCAGTTATTTAGCAAGGGTTGT AGGTCAAAAAAAGGCTAGAGAAATTTGGTTCCTATGCAGGAAATATGGAGCGAAGGAAGCATTGGATATGGGGCTAATAA ATGCAATCTCACCAATTAATTTACTCGAGTCAGAAGGTGTTAAATGGGCGAGGGAAATACTTCAAAACAGTCCAACAGCT ATAAAGTGTTTGAAATTTTCTTTTAATGCTGATACAGATGGATTAGCAGGTATCCAAGAGCTAGCTGGCCAGGCAACACA TCTTTTTTATACGACTGATGAGTCAAAGGAGGGAAGAAATGCTTTCATGGAGAAAAGGGATCCTGATTTCTCCGAATCAA AATGGCTTCCATGA
Upstream 100 bases:
>100_bases AACTCTATTGAAGATCATAGATTGAGAGTAAATTTAAGTGATGACCTAAAAAAAACATTATCTGAGAATTTATCAAGTTT TGACTAGATTTAATTAAAAA
Downstream 100 bases:
>100_bases TTTTATTTGGTTTATCCAAAAAATAAATCTTTCTTTTTCATGAATTAAATGCGAATACTTTTTGCTGCTGCTGAATGCGC CCCAATGATAAAGGTTGGAG
Product: naphthoate synthase
Products: NA
Alternate protein names: DHNA-CoA synthase [H]
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MTLKPITPNNMSRRVLPGEIITSWVSVGEYKDILLDKSPEGIARVAINRPEKRNAFRPQTISELCDAFIRIREDPKIGVV LFTGVGPSKDGKFAFCSGGDQAIRGSGGYLGDDGIPRLNVLDLQRIIRSLPKVVIALVPGFAIGGGHVLHLICDLSLAAD NAMFGQTGPKVGSFDAGFGSSYLARVVGQKKAREIWFLCRKYGAKEALDMGLINAISPINLLESEGVKWAREILQNSPTA IKCLKFSFNADTDGLAGIQELAGQATHLFYTTDESKEGRNAFMEKRDPDFSESKWLP
Sequences:
>Translated_297_residues MTLKPITPNNMSRRVLPGEIITSWVSVGEYKDILLDKSPEGIARVAINRPEKRNAFRPQTISELCDAFIRIREDPKIGVV LFTGVGPSKDGKFAFCSGGDQAIRGSGGYLGDDGIPRLNVLDLQRIIRSLPKVVIALVPGFAIGGGHVLHLICDLSLAAD NAMFGQTGPKVGSFDAGFGSSYLARVVGQKKAREIWFLCRKYGAKEALDMGLINAISPINLLESEGVKWAREILQNSPTA IKCLKFSFNADTDGLAGIQELAGQATHLFYTTDESKEGRNAFMEKRDPDFSESKWLP >Mature_296_residues TLKPITPNNMSRRVLPGEIITSWVSVGEYKDILLDKSPEGIARVAINRPEKRNAFRPQTISELCDAFIRIREDPKIGVVL FTGVGPSKDGKFAFCSGGDQAIRGSGGYLGDDGIPRLNVLDLQRIIRSLPKVVIALVPGFAIGGGHVLHLICDLSLAADN AMFGQTGPKVGSFDAGFGSSYLARVVGQKKAREIWFLCRKYGAKEALDMGLINAISPINLLESEGVKWAREILQNSPTAI KCLKFSFNADTDGLAGIQELAGQATHLFYTTDESKEGRNAFMEKRDPDFSESKWLP
Specific function: Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA) [H]
COG id: COG0447
COG function: function code H; Dihydroxynaphthoic acid synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI194097323, Length=263, Percent_Identity=30.4182509505703, Blast_Score=108, Evalue=9e-24, Organism=Homo sapiens, GI31542718, Length=256, Percent_Identity=28.125, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI70995211, Length=244, Percent_Identity=27.4590163934426, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI4502327, Length=265, Percent_Identity=29.0566037735849, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI213417737, Length=223, Percent_Identity=26.9058295964126, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI157694516, Length=223, Percent_Identity=26.9058295964126, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1788597, Length=278, Percent_Identity=60.431654676259, Blast_Score=352, Evalue=1e-98, Organism=Escherichia coli, GI1787659, Length=252, Percent_Identity=27.7777777777778, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI221142681, Length=264, Percent_Identity=29.9242424242424, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI87082183, Length=258, Percent_Identity=27.1317829457364, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787660, Length=264, Percent_Identity=27.6515151515151, Blast_Score=72, Evalue=3e-14, Organism=Caenorhabditis elegans, GI25145438, Length=260, Percent_Identity=31.1538461538462, Blast_Score=115, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17554946, Length=266, Percent_Identity=29.6992481203008, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17540714, Length=214, Percent_Identity=29.9065420560748, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17549921, Length=222, Percent_Identity=28.3783783783784, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17560910, Length=191, Percent_Identity=30.3664921465969, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17536985, Length=259, Percent_Identity=29.7297297297297, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI20129971, Length=266, Percent_Identity=29.6992481203008, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24653477, Length=266, Percent_Identity=29.6992481203008, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24653139, Length=293, Percent_Identity=26.962457337884, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI21357171, Length=214, Percent_Identity=30.3738317757009, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI24654903, Length=207, Percent_Identity=29.4685990338164, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24650670, Length=196, Percent_Identity=29.0816326530612, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 - InterPro: IPR010198 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.1.3.36 [H]
Molecular weight: Translated: 32387; Mature: 32255
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLKPITPNNMSRRVLPGEIITSWVSVGEYKDILLDKSPEGIARVAINRPEKRNAFRPQT CCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCCCCCEEEEEECCCHHCCCCCCHH ISELCDAFIRIREDPKIGVVLFTGVGPSKDGKFAFCSGGDQAIRGSGGYLGDDGIPRLNV HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCHH LDLQRIIRSLPKVVIALVPGFAIGGGHVLHLICDLSLAADNAMFGQTGPKVGSFDAGFGS HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH SYLARVVGQKKAREIWFLCRKYGAKEALDMGLINAISPINLLESEGVKWAREILQNSPTA HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHCCCCE IKCLKFSFNADTDGLAGIQELAGQATHLFYTTDESKEGRNAFMEKRDPDFSESKWLP EEEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure TLKPITPNNMSRRVLPGEIITSWVSVGEYKDILLDKSPEGIARVAINRPEKRNAFRPQT CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCCCCCEEEEEECCCHHCCCCCCHH ISELCDAFIRIREDPKIGVVLFTGVGPSKDGKFAFCSGGDQAIRGSGGYLGDDGIPRLNV HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCHH LDLQRIIRSLPKVVIALVPGFAIGGGHVLHLICDLSLAADNAMFGQTGPKVGSFDAGFGS HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH SYLARVVGQKKAREIWFLCRKYGAKEALDMGLINAISPINLLESEGVKWAREILQNSPTA HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHCCCCE IKCLKFSFNADTDGLAGIQELAGQATHLFYTTDESKEGRNAFMEKRDPDFSESKWLP EEEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1629163; 8566759; 9387221; 9384377 [H]