Definition | Prochlorococcus marinus str. NATL1A, complete genome. |
---|---|
Accession | NC_008819 |
Length | 1,864,731 |
Click here to switch to the map view.
The map label for this gene is 124025255
Identifier: 124025255
GI number: 124025255
Start: 491718
End: 492944
Strand: Direct
Name: 124025255
Synonym: NATL1_05441
Alternate gene names: NA
Gene position: 491718-492944 (Clockwise)
Preceding gene: 124025254
Following gene: 124025256
Centisome position: 26.37
GC content: 31.46
Gene sequence:
>1227_bases ATGAAATCTATTTTTATTGATTGTAGTCTTGGAATATCTGGAGATATGCTCGCATCAGCTTTATTCGATTTAGGTGTTCC GCACTCTATTTTCTTGGATAACTTAGTAAGTTTAAATATAGATAAAAATTATAAACTAAAATTTAAAGAGGGAGATAGTG AAGGCATAAAAGGTATTGTCTGTATGAAAAATGAAATTCAATTTAAGGAATTATCTAGAAGTCTTAATGAGATAAAGAAC TTACTTCTCAATTCAAGCTTGAATGATTATGTGAAGAAAAAGTCTATTAAGGTTTTTGAAATTCTTGCTGAAGCTGAAGC AGTTGTTCACGGGAATCAAATCTCAGATGTTCATTTTCATGAACTAGGTTCAATAGATTCCATCCTTGATATTGTTAATG TTTGCTCAGCTATAGATTTTTTAAAGCCATACAAAATTTATTTTTCAAATCCACCTTCTGGGAAAGGAATCGTATCCACT TCACATGGCCCTCTGCCTGTTCCAGTGCCTACTGTTCTAGAGATAGCGAGGCAAAATGAAATCCCATTAATGGTGCTTGA TGATAAATATTTTGGTGAAATAACAACTCCTACTGGCATCGCATTGATAGCAACTTTTATAGATAAGTTTGGTCAACCAA GTAATCTAAATATTCAAAATATTGGTATTGGCTTAGGAAGTAAAAATATATCTCGACCTAACTTTTTACGTATTCTGCTA ATAGATGAAAATGATGATTATATGGAAAATAATAAACCCTCTAATGAAACTATAATTGCTCAGGAGGCTTGGATTGATGA TTCTACGCCTGAAGATGTTGCGGTTTTAATAGATAGATTAAGGTCTGCAGGTGCCATAGATGTTATTTGTTATTCGGTCG ATATGAAAAAAAATAGAAAAGGTATATGTATACAAGCTATTGTTTACCCAAAGCATAAAAATTTACTGCGTGAAGTTTGG TTTAACTATAGTACAACAATTGGAATAAGAGAAAATAAGATTAGCCGCTGGATACTTCCAAGAAGAACAGTGAGTCATAA AACTAAATTTGGGACAGTTAATGTTAAACAAGCAATGAGACCAAATGGTCTTAATTCAATAAAAATAGAACATAAAGACT TGACTCGAATAACTTTAAATACAGGAATTCCAATAGAAGAGATACGTCAGAAATTAATCATAGAATTATCAGAATTTTAT GAAATCGATGATTGGTCTTTTTTATGA
Upstream 100 bases:
>100_bases ATAAAAGTAAAAAAATCTTAAAAAATAAAAATTAGTCTTATTTCGAGAATTATATATAAATGCATTCCATCTATAAAACT AATTATATATTTACTAGTAA
Downstream 100 bases:
>100_bases TTAATTTTATTATGAATGGAATTATCAGAAAAAATTTTGTTTTTGGAAAGATTTCTAAAATCAACATTAAACTTTTGATA ACATTAAGTTGTTTTGCATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 408; Mature: 408
Protein sequence:
>408_residues MKSIFIDCSLGISGDMLASALFDLGVPHSIFLDNLVSLNIDKNYKLKFKEGDSEGIKGIVCMKNEIQFKELSRSLNEIKN LLLNSSLNDYVKKKSIKVFEILAEAEAVVHGNQISDVHFHELGSIDSILDIVNVCSAIDFLKPYKIYFSNPPSGKGIVST SHGPLPVPVPTVLEIARQNEIPLMVLDDKYFGEITTPTGIALIATFIDKFGQPSNLNIQNIGIGLGSKNISRPNFLRILL IDENDDYMENNKPSNETIIAQEAWIDDSTPEDVAVLIDRLRSAGAIDVICYSVDMKKNRKGICIQAIVYPKHKNLLREVW FNYSTTIGIRENKISRWILPRRTVSHKTKFGTVNVKQAMRPNGLNSIKIEHKDLTRITLNTGIPIEEIRQKLIIELSEFY EIDDWSFL
Sequences:
>Translated_408_residues MKSIFIDCSLGISGDMLASALFDLGVPHSIFLDNLVSLNIDKNYKLKFKEGDSEGIKGIVCMKNEIQFKELSRSLNEIKN LLLNSSLNDYVKKKSIKVFEILAEAEAVVHGNQISDVHFHELGSIDSILDIVNVCSAIDFLKPYKIYFSNPPSGKGIVST SHGPLPVPVPTVLEIARQNEIPLMVLDDKYFGEITTPTGIALIATFIDKFGQPSNLNIQNIGIGLGSKNISRPNFLRILL IDENDDYMENNKPSNETIIAQEAWIDDSTPEDVAVLIDRLRSAGAIDVICYSVDMKKNRKGICIQAIVYPKHKNLLREVW FNYSTTIGIRENKISRWILPRRTVSHKTKFGTVNVKQAMRPNGLNSIKIEHKDLTRITLNTGIPIEEIRQKLIIELSEFY EIDDWSFL >Mature_408_residues MKSIFIDCSLGISGDMLASALFDLGVPHSIFLDNLVSLNIDKNYKLKFKEGDSEGIKGIVCMKNEIQFKELSRSLNEIKN LLLNSSLNDYVKKKSIKVFEILAEAEAVVHGNQISDVHFHELGSIDSILDIVNVCSAIDFLKPYKIYFSNPPSGKGIVST SHGPLPVPVPTVLEIARQNEIPLMVLDDKYFGEITTPTGIALIATFIDKFGQPSNLNIQNIGIGLGSKNISRPNFLRILL IDENDDYMENNKPSNETIIAQEAWIDDSTPEDVAVLIDRLRSAGAIDVICYSVDMKKNRKGICIQAIVYPKHKNLLREVW FNYSTTIGIRENKISRWILPRRTVSHKTKFGTVNVKQAMRPNGLNSIKIEHKDLTRITLNTGIPIEEIRQKLIIELSEFY EIDDWSFL
Specific function: Unknown
COG id: COG1641
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0272 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002822 [H]
Pfam domain/function: PF01969 DUF111 [H]
EC number: NA
Molecular weight: Translated: 45921; Mature: 45921
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSIFIDCSLGISGDMLASALFDLGVPHSIFLDNLVSLNIDKNYKLKFKEGDSEGIKGIV CCEEEEEEECCCCHHHHHHHHHHCCCCHHHHHCCEEEEECCCCEEEEEECCCCCCCEEEE CMKNEIQFKELSRSLNEIKNLLLNSSLNDYVKKKSIKVFEILAEAEAVVHGNQISDVHFH EECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHEECCCCCCCHHH ELGSIDSILDIVNVCSAIDFLKPYKIYFSNPPSGKGIVSTSHGPLPVPVPTVLEIARQNE HHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHCCC IPLMVLDDKYFGEITTPTGIALIATFIDKFGQPSNLNIQNIGIGLGSKNISRPNFLRILL CCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCEEEEEE IDENDDYMENNKPSNETIIAQEAWIDDSTPEDVAVLIDRLRSAGAIDVICYSVDMKKNRK EECCCCHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCC GICIQAIVYPKHKNLLREVWFNYSTTIGIRENKISRWILPRRTVSHKTKFGTVNVKQAMR CEEEEEEEECCHHHHHHHHHCCCCEEEEEECCCHHHEECCCCHHCCCCCCCEEEHHHHCC PNGLNSIKIEHKDLTRITLNTGIPIEEIRQKLIIELSEFYEIDDWSFL CCCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHEECCCCCCC >Mature Secondary Structure MKSIFIDCSLGISGDMLASALFDLGVPHSIFLDNLVSLNIDKNYKLKFKEGDSEGIKGIV CCEEEEEEECCCCHHHHHHHHHHCCCCHHHHHCCEEEEECCCCEEEEEECCCCCCCEEEE CMKNEIQFKELSRSLNEIKNLLLNSSLNDYVKKKSIKVFEILAEAEAVVHGNQISDVHFH EECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHEECCCCCCCHHH ELGSIDSILDIVNVCSAIDFLKPYKIYFSNPPSGKGIVSTSHGPLPVPVPTVLEIARQNE HHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHCCC IPLMVLDDKYFGEITTPTGIALIATFIDKFGQPSNLNIQNIGIGLGSKNISRPNFLRILL CCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCEEEEEE IDENDDYMENNKPSNETIIAQEAWIDDSTPEDVAVLIDRLRSAGAIDVICYSVDMKKNRK EECCCCHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCC GICIQAIVYPKHKNLLREVWFNYSTTIGIRENKISRWILPRRTVSHKTKFGTVNVKQAMR CEEEEEEEECCHHHHHHHHHCCCCEEEEEECCCHHHEECCCCHHCCCCCCCEEEHHHHCC PNGLNSIKIEHKDLTRITLNTGIPIEEIRQKLIIELSEFYEIDDWSFL CCCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12240834 [H]