Click here to switch to the map view.

The map label for this gene is deoC [H]

Identifier: 124025164

GI number: 124025164

Start: 412509

End: 413192

Strand: Reverse

Name: deoC [H]

Synonym: NATL1_04511

Alternate gene names: 124025164

Gene position: 413192-412509 (Counterclockwise)

Preceding gene: 124025165

Following gene: 124025163

Centisome position: 22.16

GC content: 34.21

Gene sequence:

>684_bases
ATGAGTAAAAATAGCTTGGAAGAAGCTCATGCCAATATTTCTAATGTGATTTATCAAGCAATCCTAAATCCTCATTTTAA
TAAAGAAACGATTGTTCAGATTTGTGATGCCTCCAAGCAAAATAGCTTCGCAGGCTTATGCACTAGTCTTGCAAACCTAA
CAATTGCACGTGAAAGGTTAGGTAGCAAAAGTACTACAAAATTAATCTCAGTCATTGCCTTCCCTTTTGGTTTCATCCCA
ACTTCTAACAAACGAAAAGAAGCCGAGTATGCAATAGAAAAAGGAGCAGATGAGTTAGATCTAGTTCCAAATTATTTTGC
ATTAAAGGAAGGAAAAATAGAACTTTTTGCTGAGGAAATAAATCAAATAAGTGAACTTGGTATTCCAGTAAGAGTAATAA
TTGATGCAAATATACTCATAAACTCATCAAAACTTTCGATGGCAATAGATGCTCTAATCGATGCGGGAGCAATTGGGATT
CAAATAGGTAATGGTTTTGGTCCATCTGTCTCAAAGGATCAAACAAAACATGTCTCTAAACTTGTTAAAAATCGTTGTTC
AATTAAAGCTGTTGGAGGCATTAAAACTTTTGATCAAGCAATAGAAATCATTGAAGCAGGGTCAACATATATTGGAACAA
GTTTTGGCTTTGAAATTACCCAAGAACAAAAGAAAAAGGAGTAA

Upstream 100 bases:

>100_bases
ATTTATTTAGAGAGGAAGAAGGATCAGCATTACGAGTCATATATAGGAGAAATCACGGAGGATATGGCGTAATCCAAGAA
AAAAGTTAGCGCCCAGTCAA

Downstream 100 bases:

>100_bases
TGAATTTAAATCTAAGAATGAAAGGATTGTCTTTAAAAGTTGGACCTCTCGGTGAAAATGACAGGCTTTTAACCATACTT
AGTGAAGAAAGTGGAATATC

Product: putative deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MSKNSLEEAHANISNVIYQAILNPHFNKETIVQICDASKQNSFAGLCTSLANLTIARERLGSKSTTKLISVIAFPFGFIP
TSNKRKEAEYAIEKGADELDLVPNYFALKEGKIELFAEEINQISELGIPVRVIIDANILINSSKLSMAIDALIDAGAIGI
QIGNGFGPSVSKDQTKHVSKLVKNRCSIKAVGGIKTFDQAIEIIEAGSTYIGTSFGFEITQEQKKKE

Sequences:

>Translated_227_residues
MSKNSLEEAHANISNVIYQAILNPHFNKETIVQICDASKQNSFAGLCTSLANLTIARERLGSKSTTKLISVIAFPFGFIP
TSNKRKEAEYAIEKGADELDLVPNYFALKEGKIELFAEEINQISELGIPVRVIIDANILINSSKLSMAIDALIDAGAIGI
QIGNGFGPSVSKDQTKHVSKLVKNRCSIKAVGGIKTFDQAIEIIEAGSTYIGTSFGFEITQEQKKKE
>Mature_226_residues
SKNSLEEAHANISNVIYQAILNPHFNKETIVQICDASKQNSFAGLCTSLANLTIARERLGSKSTTKLISVIAFPFGFIPT
SNKRKEAEYAIEKGADELDLVPNYFALKEGKIELFAEEINQISELGIPVRVIIDANILINSSKLSMAIDALIDAGAIGIQ
IGNGFGPSVSKDQTKHVSKLVKNRCSIKAVGGIKTFDQAIEIIEAGSTYIGTSFGFEITQEQKKKE

Specific function: Unknown

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 24652; Mature: 24520

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNSLEEAHANISNVIYQAILNPHFNKETIVQICDASKQNSFAGLCTSLANLTIARERL
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
GSKSTTKLISVIAFPFGFIPTSNKRKEAEYAIEKGADELDLVPNYFALKEGKIELFAEEI
CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHCCCCCCEECCCCHHHHHHHH
NQISELGIPVRVIIDANILINSSKLSMAIDALIDAGAIGIQIGNGFGPSVSKDQTKHVSK
HHHHHCCCCEEEEEECEEEEECHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHH
LVKNRCSIKAVGGIKTFDQAIEIIEAGSTYIGTSFGFEITQEQKKKE
HHHCCCCEEECCCHHHHHHHHHHHHCCCCEEECCCCCEECHHHHCCC
>Mature Secondary Structure 
SKNSLEEAHANISNVIYQAILNPHFNKETIVQICDASKQNSFAGLCTSLANLTIARERL
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
GSKSTTKLISVIAFPFGFIPTSNKRKEAEYAIEKGADELDLVPNYFALKEGKIELFAEEI
CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHCCCCCCEECCCCHHHHHHHH
NQISELGIPVRVIIDANILINSSKLSMAIDALIDAGAIGIQIGNGFGPSVSKDQTKHVSK
HHHHHCCCCEEEEEECEEEEECHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHH
LVKNRCSIKAVGGIKTFDQAIEIIEAGSTYIGTSFGFEITQEQKKKE
HHHCCCCEEECCCHHHHHHHHHHHHCCCCEEECCCCCEECHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA