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The map label for this gene is recO [H]

Identifier: 124025163

GI number: 124025163

Start: 411712

End: 412491

Strand: Reverse

Name: recO [H]

Synonym: NATL1_04501

Alternate gene names: 124025163

Gene position: 412491-411712 (Counterclockwise)

Preceding gene: 124025164

Following gene: 124025162

Centisome position: 22.12

GC content: 34.74

Gene sequence:

>780_bases
ATGAAAGGATTGTCTTTAAAAGTTGGACCTCTCGGTGAAAATGACAGGCTTTTAACCATACTTAGTGAAGAAAGTGGAAT
ATCTCGTCTTGCAATACCAGGGGCAAGAAAACCAAAAAGCAGACTGGGAGCAACATCACCTTTTAATCTTTTAGATTTAC
ACATAGTTGGAAAAAAAGATCTTAAGAAAGTTACACAAATAAAGATTATTAAGAGTTATGGGAATCTAGGAAAAAACATC
GAAACACTTTCAGCAGCACAAGCAATTTCAGAGCTGATTCTGATTATGGTTGGGAATGAAGACCCGCAAAAAGATTTACT
TAAACTAGTTTTAATGCATCTAAATAGACTAAATGAATTACATAAAACAGAATTTAATTCCTTAGAAGCGCTAGCAATAA
GCGTTCAATCGAGTATTCATTTATTAGCTCTAGGAGGATATTGTTTACCACTTCAAAACTGTTGTCATTCTGGCTCCAAG
CTGATACCCCCAATTGGAGAATGGGGCTGGAGGTGTAGTTTTATTCCTGAAGAAGGTTTTGCAATTGGAACAATGCCTAA
TGCAAGCGCTGAGTTGAATCCATCTGAACTTGCTTTACTTCAAAGACTATTACTAGAAAAAGTACCTTTTCACAGTAATG
GAAAATTATTAGGTCCTAAACAAGTCTGGTTAAAACTACTGAAAATTGTTGAAACCTGGATTGAAACTCACTTACAAAGA
AGAATTACATCTCTTCAAATGATGAGAGAGGTAATCATTAGTAATGATCTAAATACTTAG

Upstream 100 bases:

>100_bases
TAGAAATCATTGAAGCAGGGTCAACATATATTGGAACAAGTTTTGGCTTTGAAATTACCCAAGAACAAAAGAAAAAGGAG
TAATGAATTTAAATCTAAGA

Downstream 100 bases:

>100_bases
TAGGAAAATAATATATTTGAAAAAAATTATTAGTTAAAAAATTTTTATTTTGTAAATTATTTAACTATTAACAATAGTTT
GAGAAGAAATAAACGATAGC

Product: putative recombination protein O

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MKGLSLKVGPLGENDRLLTILSEESGISRLAIPGARKPKSRLGATSPFNLLDLHIVGKKDLKKVTQIKIIKSYGNLGKNI
ETLSAAQAISELILIMVGNEDPQKDLLKLVLMHLNRLNELHKTEFNSLEALAISVQSSIHLLALGGYCLPLQNCCHSGSK
LIPPIGEWGWRCSFIPEEGFAIGTMPNASAELNPSELALLQRLLLEKVPFHSNGKLLGPKQVWLKLLKIVETWIETHLQR
RITSLQMMREVIISNDLNT

Sequences:

>Translated_259_residues
MKGLSLKVGPLGENDRLLTILSEESGISRLAIPGARKPKSRLGATSPFNLLDLHIVGKKDLKKVTQIKIIKSYGNLGKNI
ETLSAAQAISELILIMVGNEDPQKDLLKLVLMHLNRLNELHKTEFNSLEALAISVQSSIHLLALGGYCLPLQNCCHSGSK
LIPPIGEWGWRCSFIPEEGFAIGTMPNASAELNPSELALLQRLLLEKVPFHSNGKLLGPKQVWLKLLKIVETWIETHLQR
RITSLQMMREVIISNDLNT
>Mature_259_residues
MKGLSLKVGPLGENDRLLTILSEESGISRLAIPGARKPKSRLGATSPFNLLDLHIVGKKDLKKVTQIKIIKSYGNLGKNI
ETLSAAQAISELILIMVGNEDPQKDLLKLVLMHLNRLNELHKTEFNSLEALAISVQSSIHLLALGGYCLPLQNCCHSGSK
LIPPIGEWGWRCSFIPEEGFAIGTMPNASAELNPSELALLQRLLLEKVPFHSNGKLLGPKQVWLKLLKIVETWIETHLQR
RITSLQMMREVIISNDLNT

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 28672; Mature: 28672

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGLSLKVGPLGENDRLLTILSEESGISRLAIPGARKPKSRLGATSPFNLLDLHIVGKKD
CCCCCEEECCCCCCCCEEEEEECCCCCCEEECCCCCCCHHHCCCCCCCCEEEEEEECHHH
LKKVTQIKIIKSYGNLGKNIETLSAAQAISELILIMVGNEDPQKDLLKLVLMHLNRLNEL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHH
HKTEFNSLEALAISVQSSIHLLALGGYCLPLQNCCHSGSKLIPPIGEWGWRCSFIPEEGF
HHHHHCCHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCE
AIGTMPNASAELNPSELALLQRLLLEKVPFHSNGKLLGPKQVWLKLLKIVETWIETHLQR
EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHH
RITSLQMMREVIISNDLNT
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKGLSLKVGPLGENDRLLTILSEESGISRLAIPGARKPKSRLGATSPFNLLDLHIVGKKD
CCCCCEEECCCCCCCCEEEEEECCCCCCEEECCCCCCCHHHCCCCCCCCEEEEEEECHHH
LKKVTQIKIIKSYGNLGKNIETLSAAQAISELILIMVGNEDPQKDLLKLVLMHLNRLNEL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHH
HKTEFNSLEALAISVQSSIHLLALGGYCLPLQNCCHSGSKLIPPIGEWGWRCSFIPEEGF
HHHHHCCHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCE
AIGTMPNASAELNPSELALLQRLLLEKVPFHSNGKLLGPKQVWLKLLKIVETWIETHLQR
EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHH
RITSLQMMREVIISNDLNT
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA