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The map label for this gene is rbpE [H]

Identifier: 124021728

GI number: 124021728

Start: 17264

End: 17872

Strand: Direct

Name: rbpE [H]

Synonym: P9303_00131

Alternate gene names: 124021728

Gene position: 17264-17872 (Clockwise)

Preceding gene: 124021727

Following gene: 124021730

Centisome position: 0.64

GC content: 62.56

Gene sequence:

>609_bases
GTGAGTATTTTCGTCGGCAATCTTCCCTTCCGCGCTGAGCAGGAAGACGTTATTGAATTGTTTGCACCTTTTGGTGAGGT
TGCGAATTGTGCTTTGCCCTTGGAACGCGACACAGGACGCAAAAGGGGCTTTGCTTTTGTTGAGATGGCTGATGAGTCAG
CTGAGCCTGCGGCTATCGAGGCTCTTCAAGGGGCGGAAATGATGGGTCGCCCTTTGAGGATTAATAAGGCAGAGCCACGT
GGCAGTGCGCCCCGTCGCGGTGGCGGCGGTGGATATGGCGGTGGCGGCGGTGGATATGGCGGCGGCGGTGGCGGATATGG
CGGTGGCGGCGGCGGATATGGCGGCGGCGGTGGTGGATATGGCGGCGGCGGCGGTGGCTATGGCGGCGGCGGTGGTGGCG
GCGGCGGCGGTGGATATGGCGGCGGTGGTGGCGGCGGCGGTGGAGATCGTGGTTCCGGAGCTCGTGGTTGGGAAGATCGC
AGTTATGGCGGAGCTGCTCCTGAAACAAGTTCCTATGACGACGGTCGCACTCGTCGTCGTAGGGGAGGAGCTGCACCTGA
GGGTGAAGGTGGTGACAGCTACAGCGGATATGGGGGAGCGGAGGGCTGA

Upstream 100 bases:

>100_bases
GCTGATAGCGCCAAAGGTGGATTGATTCATTCCCGAATCATGAACTAATGGCTATACCTGGCCAATTGGTCCACTACTTT
TTTTACGGTCCACAAGGAAA

Downstream 100 bases:

>100_bases
GTGAAGTCCTTATAGCCCGGCATCTTCAAGTTGCTGGGCTGCTTTTTGCAGCACTGTTAGATCGGCATCGGCTTTTTGAG
CCTTGATGCCAAGGTCTCGC

Product: RNA recognition motif-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MSIFVGNLPFRAEQEDVIELFAPFGEVANCALPLERDTGRKRGFAFVEMADESAEPAAIEALQGAEMMGRPLRINKAEPR
GSAPRRGGGGGYGGGGGGYGGGGGGYGGGGGGYGGGGGGYGGGGGGYGGGGGGGGGGGYGGGGGGGGGDRGSGARGWEDR
SYGGAAPETSSYDDGRTRRRRGGAAPEGEGGDSYSGYGGAEG

Sequences:

>Translated_202_residues
MSIFVGNLPFRAEQEDVIELFAPFGEVANCALPLERDTGRKRGFAFVEMADESAEPAAIEALQGAEMMGRPLRINKAEPR
GSAPRRGGGGGYGGGGGGYGGGGGGYGGGGGGYGGGGGGYGGGGGGYGGGGGGGGGGGYGGGGGGGGGDRGSGARGWEDR
SYGGAAPETSSYDDGRTRRRRGGAAPEGEGGDSYSGYGGAEG
>Mature_201_residues
SIFVGNLPFRAEQEDVIELFAPFGEVANCALPLERDTGRKRGFAFVEMADESAEPAAIEALQGAEMMGRPLRINKAEPRG
SAPRRGGGGGYGGGGGGYGGGGGGYGGGGGGYGGGGGGYGGGGGGYGGGGGGGGGGGYGGGGGGGGGDRGSGARGWEDRS
YGGAAPETSSYDDGRTRRRRGGAAPEGEGGDSYSGYGGAEG

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=44.1558441558442, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=40.2439024390244, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=42.8571428571429, Blast_Score=67, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6321599, Length=79, Percent_Identity=35.4430379746835, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 19240; Mature: 19109

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIFVGNLPFRAEQEDVIELFAPFGEVANCALPLERDTGRKRGFAFVEMADESAEPAAIE
CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHH
ALQGAEMMGRPLRINKAEPRGSAPRRGGGGGYGGGGGGYGGGGGGYGGGGGGYGGGGGGY
HHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGGGGGYGGGGGGGGGGGYGGGGGGGGGDRGSGARGWEDRSYGGAAPETSSYDDGRTRRR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
RGGAAPEGEGGDSYSGYGGAEG
HCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIFVGNLPFRAEQEDVIELFAPFGEVANCALPLERDTGRKRGFAFVEMADESAEPAAIE
EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHH
ALQGAEMMGRPLRINKAEPRGSAPRRGGGGGYGGGGGGYGGGGGGYGGGGGGYGGGGGGY
HHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGGGGGYGGGGGGGGGGGYGGGGGGGGGDRGSGARGWEDRSYGGAAPETSSYDDGRTRRR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
RGGAAPEGEGGDSYSGYGGAEG
HCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]